artemis (18.2.0+dfsg-3) unstable; urgency=medium * Raising Standards version to 4.6.1 (no change) * Updating d/watch after changes in the Github layout * Complying with htsjdk 3.0.2: - Adding a method definition to extend an abstract class - Adding a versioned dependency on libhtsjdk-java -- Pierre Gruet Fri, 04 Nov 2022 11:10:17 +0100 artemis (18.2.0+dfsg-2) unstable; urgency=medium * Upload to unstable to accompany auto-biojava-live transition (Closes: #1009294) * Adding liblog4j1.2-java as a dependency of the binary package * Add salsa-ci file (routine-update) -- Pierre Gruet Mon, 11 Apr 2022 16:39:21 +0200 artemis (18.2.0+dfsg-1) experimental; urgency=medium * New upstream version 18.2.0+dfsg * Using biojava-core.jar and Maven artifacts shipped by libbiojava-java * Adding versioned dependency on libbiojava-java with version 1:1.9.5+dfsg * Handling dependencies using maven:Depends substvar * Refreshing patches * Refreshing d/copyright * Fixing an incorrect specification of surefire argLine in pom.xml -- Pierre Gruet Sun, 10 Apr 2022 22:47:24 +0200 artemis (18.1.0+dfsg-6) unstable; urgency=medium * Using -Xmx1946m instead of -Xm4g in the autopkgtest, so that it runs on 32-bit arches -- Pierre Gruet Sun, 07 Nov 2021 15:25:19 +0100 artemis (18.1.0+dfsg-5) unstable; urgency=medium * Upload to unstable, setting the package as Architecture: all seems to be OK in experimental * Setting the classpath in d/rules is not needed with a Maven build -- Pierre Gruet Sat, 06 Nov 2021 15:29:24 +0100 artemis (18.1.0+dfsg-4) experimental; urgency=medium * Removing useless dependency on jarwrapper * Correcting Repository-* fields in d/u/metadata * Raising Standards version to 4.6.0 (no change) * Providing metainfo files * Setting Architecture to all as picard-tools is now Architecture: all * Removing the Lintian override about big /usr/share, useless as the package is now Architecture: all. -- Pierre Gruet Fri, 05 Nov 2021 21:14:27 +0100 artemis (18.1.0+dfsg-3) unstable; urgency=medium * Changing homepage in d/control and manpages (Closes: #974680) * Standards version set to 4.5.1 (no changes needed) -- Pierre Gruet Fri, 04 Dec 2020 17:28:17 +0100 artemis (18.1.0+dfsg-2) unstable; urgency=medium * Marking current autopkgtest as superficial (Closes: #974437) * Adding an autopkgtest running some build tests -- Pierre Gruet Thu, 12 Nov 2020 21:44:47 +0100 artemis (18.1.0+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * Fix edam syntax input+output is singular [ Michael R. Crusoe ] * forwarded a patch upstream [ Steffen Moeller ] * Added ref to conda * d/u/metadata: yamllint [ Pierre Gruet ] * New upstream version 18.1.0+dfsg Closes: #963430 * Bumping Standards version to 4.5.0 (Rules-Requires-Root field added) * Depending on debhelper-compat * Updating Files-Excluded patterns in debian/copyright * Removing patches written for the old ant build * Adding metadata relative to Issues and Repository * Updating dependencies as Maven now replaces ant for the build * Updating debian/copyright as paths have changed * Building with Maven instead of ant * Fixing insecure uri and trailing whitespaces in debian/control * Replacing symlinks to jars with upstream-provided scripts * Updating and completing manpages of act and dnaplotter -- Pierre Gruet Sun, 06 Sep 2020 22:43:16 +0200 artemis (17.0.1+dfsg-2) unstable; urgency=medium * Add myself to Uploaders to have at least one human uploader after Afif removed himself (thanks for your previous work, Afif) * Standards-Version: 4.3.0 * Add primitiv autopkgtest (no idea how to do better for gui programs) * Architecture: amd64 (since it depends from now amd64 only libpicard-java) * Use jarwrapper at least for executable that should be tested since directly calling jars does not work in autopkgtest environment -- Andreas Tille Fri, 08 Feb 2019 11:36:02 +0100 artemis (17.0.1+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version Closes: #893184 * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.0 * Class FTPSeekableStream should not be excluded * Update patch that prevents copying of non-existing files * d/rules: Use dh_auto_build instead of $(MAKE) * All JAR files named lower case according to Java policy * d/watch: use xz compression -- Andreas Tille Tue, 14 Aug 2018 13:59:24 +0200 artemis (16.0.17+dfsg-3) unstable; urgency=medium * Team upload [ Steffen Moeller ] * debian/upstream/metadata: - RRID -> SciCrunch - Added ref to OMICtools and bio.tools [ Fabian Klötzl ] * add batik-all.jar to classpath (Closes: #879384) [ Andreas Tille ] * Standards-Version: 4.1.1 -- Fabian Klötzl Mon, 23 Oct 2017 10:38:42 +0200 artemis (16.0.17+dfsg-2) unstable; urgency=medium * Team upload. * Depends: jarwrapper Closes: #859660 -- Andreas Tille Sun, 14 May 2017 07:40:05 +0200 artemis (16.0.17+dfsg-1) unstable; urgency=medium [ Sascha Steinbiss ] * Team upload. * New upstream release. * Refresh patches. * Avoid use of deprecated SAM access method to fix FTBFS. Closes: 846671 [ Andreas Tille ] * Cleanup patches and add DEP3 headers * debhelper 10 * cme fix dpkg-control * d/watch: version=4 -- Sascha Steinbiss Thu, 08 Dec 2016 09:39:12 +0100 artemis (16.0.0+dfsg-5) unstable; urgency=medium [ Steffen Moeller and Jon Ison ] * Introduced EDAM annotation [ Sascha Steinbiss ] * Bump Standards-Version * Use secure Vcs-* [ Sascha Steinbiss and Afif Elghraoui ] * Patch code to use new htsjdk API (Closes: #808851) -- Afif Elghraoui Sat, 26 Mar 2016 12:26:38 -0700 artemis (16.0.0+dfsg-4) unstable; urgency=high * Add dependency on libbiojava-java, a package required for Artemis to function. -- Afif Elghraoui Fri, 20 Nov 2015 21:15:22 -0800 artemis (16.0.0+dfsg-3) unstable; urgency=medium [ Afif Elghraoui ] * Add upstream-contact and update project homepage * Add /usr/bin/bamview and a desktop entry for it * Note in the description that additional utilities are included [ Sascha Steinbiss ] * Rename methods to avoid name clash in Java 8 (Closes: #804091) -- Afif Elghraoui Sun, 08 Nov 2015 12:51:37 -0800 artemis (16.0.0+dfsg-2) unstable; urgency=medium [ Afif Elghraoui ] * Rename artemis.desktop to avoid file name conflict (Closes: 803945) [ Emmanuel Bourg ] * Depend on libcommons-net-java instead of libcommons-net2-java -- Afif Elghraoui Wed, 04 Nov 2015 21:19:08 -0800 artemis (16.0.0+dfsg-1) unstable; urgency=low * Initial release (Closes: #802739) -- Afif Elghraoui Fri, 23 Oct 2015 00:15:20 -0700