augustus (3.5.0+dfsg-4) unstable; urgency=medium * Ensure multiple builds can be done in same directory. Done by ensuring the directory is cleaned correctly. Closes: #1043915 -- Sascha Steinbiss Sat, 18 Nov 2023 08:21:25 +0100 augustus (3.5.0+dfsg-3) unstable; urgency=medium * Add patch to fix building with GCC 13. Addresses: #1037585 -- Sascha Steinbiss Sat, 17 Jun 2023 18:33:10 +0200 augustus (3.5.0+dfsg-2) unstable; urgency=medium * Skip filterBam auxprogs test on s390x. -- Sascha Steinbiss Mon, 21 Nov 2022 00:11:53 +0100 augustus (3.5.0+dfsg-1) unstable; urgency=medium * Team upload. * Fix watch file * Cleanup d/copyright from unused Files-Excluded * Standards-Version: 4.6.1 (routine-update) * Remove RUNPATH from binaries * lintian-overrides for false positives -- Andreas Tille Mon, 10 Oct 2022 09:16:46 +0200 augustus (3.4.0+dfsg2-3) unstable; urgency=medium * Fix watchfile to work with recent GitHub link structure. -- Sascha Steinbiss Tue, 28 Sep 2021 22:14:24 +0200 augustus (3.4.0+dfsg2-2) unstable; urgency=medium * Fix dversionmangle to allow for +dfsgX suffixes. * Run tests without --compare. This hopefully fixes FTBFS due to different results on different platforms, not matching the reference. -- Sascha Steinbiss Sun, 03 Jan 2021 16:10:48 +0100 augustus (3.4.0+dfsg2-1) unstable; urgency=medium [ Steffen Moeller ] * New upstream version * Standards-Version: 4.5.1 (routine-update) * Add salsa-ci file (routine-update) * Use secure URI in Homepage field. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. [ Sascha Steinbiss ] * Remove obsolete directories from Files-Excluded. * Re-introduce tutorials in orig tarball. * Add Suggests for dependencies of the scripts bundled with AUGUSTUS. * Add/remove some content to be installed. * Extend doc-base files. * Add some new build-deps and remove old libbam-dev build-dep. * Remove Build-Using mechanics for libbam-dev. * Use patches prepared by upstream. * Adjust changelog location. -- Sascha Steinbiss Mon, 28 Dec 2020 22:33:43 +0100 augustus (3.3.3+dfsg-4) unstable; urgency=medium * Drop conflicting build-dep on libcurl4-nss-dev. Closes: 971792 * Use debhelper 13. * Add Rules-Requires-Root: no. -- Sascha Steinbiss Wed, 07 Oct 2020 13:20:31 +0200 augustus (3.3.3+dfsg-3) unstable; urgency=medium * Use debhelper-compat. * Bump Standards-Version. * Add EDAM and citations (Thanks Matúš Kalaš). * Do yamllint on metadata (Thanks Steffen Moeller). -- Sascha Steinbiss Fri, 17 Apr 2020 11:31:53 +0200 augustus (3.3.3+dfsg-2) unstable; urgency=medium * Use source package name for Built-Using entry. Closes: #940703 -- Sascha Steinbiss Sun, 22 Sep 2019 21:40:24 +0200 augustus (3.3.3+dfsg-1) unstable; urgency=medium [ Sascha Steinbiss ] * New upstream release. * Remove obsolete entry in doc-base. * Use debhelper 12. * Bump Standards-Version. * Fix interpreter paths in Perl scripts. [ Steffen Moeller ] * Add d/upstream/metadata reference to Conda. -- Sascha Steinbiss Wed, 18 Sep 2019 23:11:59 +0200 augustus (3.3.2+dfsg-2) unstable; urgency=medium * Use dynamic Built-Using in d/control. Closes: #924359 -- Sascha Steinbiss Fri, 15 Mar 2019 17:11:10 +0100 augustus (3.3.2+dfsg-1) unstable; urgency=medium * New upstream release. * Exclude new training directory from tarball. * Adjust doc-base. * Use secure Format URL in d/copyright. * Add new build-deps for OpenSSL and libcurl. * Set AUGUSTUS_CONFIG_PATH at build time to enable tests. -- Sascha Steinbiss Sat, 06 Oct 2018 14:24:12 +0200 augustus (3.3.1+dfsg-2) unstable; urgency=medium * Team upload. * d/watch: Source download is now on Github * Standards-Version: 4.2.1 -- Andreas Tille Thu, 13 Sep 2018 15:48:26 +0200 augustus (3.3.1+dfsg-1) unstable; urgency=medium [ Steffen Moeller ] * debian/upstream/metadata: RRID -> SciCrunch [ Sascha Steinbiss ] * New upstream release. * Fix typo in manpage. * Remove obsolete Testsuite entry. * Bump Standards-Version. * Remove old patches. * Update VCS-* links. * Bump debhelper requirement to version 11. -- Sascha Steinbiss Sat, 12 May 2018 08:25:35 +0200 augustus (3.3+dfsg-2) unstable; urgency=medium [ Steffen Moeller ] * Added registry entries for bio.tools and OMICtools. [ Sascha Steinbiss ] * Remove explicit dependencies to shared libraries. Closes: #869126 * Make sure dynamic linking is used throughout the package. One exception is an executable still using the legacy samtools API, for which it links statically against the libbam.a provided by libbam-dev. Added a Built-Using entry for that. Thanks to Mattia Rizzolo for the hint. * Sanitize runtime dependencies. * Add missing auxtools to package. -- Sascha Steinbiss Fri, 28 Jul 2017 21:32:29 +0200 augustus (3.3+dfsg-1) unstable; urgency=medium [ Steffen Moeller ] * Added RRID (SCR_008417) [ Sascha Steinbiss ] * New upstream release. * Adjust excluded files as upstream chose to include some new binaries. * Bump Standards-Version. -- Sascha Steinbiss Mon, 17 Jul 2017 19:03:17 +0200 augustus (3.2.3+dfsg-1) unstable; urgency=medium * New upstream version. * Refresh and drop patches. * Adjust excluded files due to upstream source changes. * Drop unused overrides. * Use man pages provided by upstream. * Fix spelling errors. * Use debhelper 10. -- Sascha Steinbiss Sun, 11 Dec 2016 10:25:18 +0000 augustus (3.2.2+dfsg-2) unstable; urgency=medium * Update uploader email address. * Fix manpage option entry. * Avoid use of PATH_MAX. This enables building on Hurd. * Bump Standards-Version. -- Sascha Steinbiss Sun, 25 Sep 2016 13:00:07 +0000 augustus (3.2.2+dfsg-1) unstable; urgency=low * Initial release (Closes: #819355) -- Sascha Steinbiss Sat, 02 Apr 2016 20:13:40 +0000