bamtools (2.5.2+dfsg-6) unstable; urgency=medium * Fix output data on bigendian architectures (Thanks a lot for the patch from Vladimir Petko !) Closes: #1075990 * Standards-Version: 4.7.0 (routine-update) * Build-Depends: s/pkg-config/pkgconf/ -- Andreas Tille Fri, 12 Jul 2024 13:46:23 +0200 bamtools (2.5.2+dfsg-5) unstable; urgency=medium * d/control: add myself to uploaders. * d/rules: preserve pristine Doxyfile. (Closes: #1043881) * typo.patch: new: fix typo caught by lintian. -- Étienne Mollier Fri, 15 Dec 2023 19:09:45 +0100 bamtools (2.5.2+dfsg-4) unstable; urgency=medium * Team upload. * d/control: libbamtools-doc depends on libjs-jquery. Thanks to Andreas Beckmann (Closes: #988848) * Standards-Version: 4.6.2 (routine-update) -- Étienne Mollier Mon, 19 Dec 2022 22:45:16 +0100 bamtools (2.5.2+dfsg-3) unstable; urgency=medium * Reduce number of tests also for armel Closes: #992143 -- Andreas Tille Fri, 02 Dec 2022 13:52:00 +0100 bamtools (2.5.2+dfsg-2) unstable; urgency=medium * Do not try to move Doxyfile.bak which does not exist any more in doxygen 1.9.4 Closes: #1015861 * Build-Depends: pkg-config (since cmake is asking for it) * Standards-Version: 4.6.1 (routine-update) -- Andreas Tille Fri, 02 Sep 2022 19:53:29 +0200 bamtools (2.5.2+dfsg-1) experimental; urgency=medium [ Michael R. Crusoe ] * Standards-Version: 4.6.0 (routine-update) * refresh patches including reworking the shared & static library patch [ Andreas Tille ] * Remove Dominique Belhachemi from Uploaders (Thanks Dominique for all your work) * Remove unneeded lintian override [ Étienne Mollier ] * Remove gcc11.patch -- Andreas Tille Fri, 18 Mar 2022 13:25:54 +0100 bamtools (2.5.1+dfsg-10) unstable; urgency=medium * Team upload. * Add gcc11.patch (Closes: 983981) * Remove bamtools.lintian-overrides -- Étienne Mollier Sat, 06 Nov 2021 19:31:45 +0100 bamtools (2.5.1+dfsg-9) unstable; urgency=medium [ Steffen Möller ] * Update metadata - indent and ref to guix [ Andreas Tille ] * Extend means to prevent timeouts from amd64 also to armhf and s390x Closes: #987023 -- Andreas Tille Thu, 15 Apr 2021 21:28:36 +0200 bamtools (2.5.1+dfsg-8) unstable; urgency=medium * Exclude test that times out on arm64 Closes: #953939 * Standards-Version: 4.5.1 (routine-update) -- Andreas Tille Wed, 27 Jan 2021 08:26:37 +0100 bamtools (2.5.1+dfsg-7) unstable; urgency=medium * Override dh_auto_install-indep Closes: #961777 -- Andreas Tille Fri, 29 May 2020 13:00:25 +0200 bamtools (2.5.1+dfsg-6) unstable; urgency=medium * Add IsSupplementaryAlignment() patch from bamtools code copy shipped with tiddit * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Submit. * Use d-shlibs * Build additional static lib -- Andreas Tille Wed, 27 May 2020 12:14:50 +0200 bamtools (2.5.1+dfsg-5) unstable; urgency=medium * Ignore one test that is known to fail on ppc64el architecture Closes: #933505 * Set upstream metadata fields: Bug-Database, Repository, Repository- Browse. -- Andreas Tille Tue, 10 Dec 2019 12:00:36 +0100 bamtools (2.5.1+dfsg-4) unstable; urgency=medium [ Jelmer Vernooij ] * Trim trailing whitespace. [ Andreas Tille ] * debhelper-compat 12 * Standards-Version: 4.4.1 * Drop useless get-orig-source target * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Trim trailing whitespace. * Set upstream metadata fields: Repository. * Remove obsolete fields Name from debian/upstream/metadata. -- Andreas Tille Thu, 10 Oct 2019 12:59:38 +0200 bamtools (2.5.1+dfsg-3) unstable; urgency=medium * Point Vcs fields to salsa.debian.org * Use Breaks+Replaces: libbamtools2.4.0 (<< 2.5.1+dfsg-2~) since the includes were formerly in lib package Closes: #894886 -- Andreas Tille Thu, 05 Apr 2018 11:54:57 +0200 bamtools (2.5.1+dfsg-2) unstable; urgency=medium * Move /usr/includes to -dev from libbamtools2.4.0 * debian/control: add Multi-Arch hints and remove unneeded ${devlibs:Depends} * Build the shared library. * drop 0002-support-out-of-source-build patch, as this was fixed differently upstream * Match upstream's soname change -- Michael R. Crusoe Tue, 03 Apr 2018 04:18:02 -0700 bamtools (2.5.1+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * New upstream version * cme fix dpkg-control * debhelper 11 [ Michael R. Crusoe ] * Make release ready with cme fix dpkg * fix built in tests * debian/rules: remove unused variables; drop custom library install; add hardening -- Michael R. Crusoe Mon, 02 Apr 2018 09:47:32 -0700 bamtools (2.4.1+dfsg-2) unstable; urgency=medium * Team upload. [ Nadiya Sitdykova ] * add autopkgtest test-suite [ Afif Elghraoui ] * remove unused lintian overrides [ Steffen Moeller ] * debian/upstream/metadata: Added refs to bio.tools and OMICtools * debian/copyright: Corrected case of upstream name * debian/control: Updated policy compliance to 4.0.1 -- Nadiya Sitdykova Mon, 07 Aug 2017 17:01:19 -0400 bamtools (2.4.1+dfsg-1) unstable; urgency=medium * New upstream version * debhelper 10 * cme fix dpkg-control * d/watch: version=4 * Priority: optional * soversion stays at 2.4.0 (FIXME: in future versions this should be rather 2.5 without micro number) -- Andreas Tille Fri, 13 Jan 2017 10:47:00 +0100 bamtools (2.4.0+dfsg-6) unstable; urgency=medium * Whoops, forgot the '+dfsg' in my fix for the movement of the development docs into their own -doc package. Thanks go to Andreas Beckmann for his patience and help. (Closes: 817188) -- Michael R. Crusoe Thu, 10 Mar 2016 01:38:21 -0800 bamtools (2.4.0+dfsg-5) unstable; urgency=medium * Fix the movement of the development docs into their own -doc package (Closes: 817188) * Fix another typo in upstream -- Michael R. Crusoe Wed, 09 Mar 2016 00:58:33 -0800 bamtools (2.4.0+dfsg-4) unstable; urgency=medium * Lower priority to 'extra' due to dependency on libjsoncpp1 * Split out -doc package for library documentation & enable standalone -arch and -indep building * Fix spelling error from upstream * Update Standards-Version * Update my email address * Fix Vcs-Git URL * Quiet some Doxygen warnings * Add gcc-6 compat * Include ${devlibs} for -dev package * Forwarded many patches upstream * Remove the html docs directory during d/rules clean -- Michael R. Crusoe Sat, 05 Mar 2016 09:07:48 -0800 bamtools (2.4.0+dfsg-3) unstable; urgency=medium * allows one to read bam files on big endian systems (Closes: #807979) * added sam_spec_example.sam and sam_spec_example.bam files * activated cmake testing framework abd added simple tests -- Dominique Belhachemi Sun, 20 Dec 2015 15:41:42 -0500 bamtools (2.4.0+dfsg-2) unstable; urgency=medium [ Kevin Murray ] * Fix re-upload confusion * Fix build of doxygen docs, add docs-base * Use uscan file renaming to name upstream tarball bamtools-Vxxx.tar.gz * Refresh patch queue [ Andreas Tille] * Fix linitan overides for bamtools -- Kevin Murray Thu, 24 Sep 2015 17:27:16 +1000 bamtools (2.4.0+dfsg-1) unstable; urgency=medium * New upstream version * Fix d/watch + get-orig-source target * Adapt library package name to version number -- Andreas Tille Sun, 05 Jul 2015 15:41:35 +0200 bamtools (2.3.0+dfsg-3) unstable; urgency=medium [ Michael R. Crusoe ] * Make Doxygen documentation generation reproducible by eliminating timestamps. [ Andreas Tille ] * Install cmake file * Fix some issues in formatting of long descriptions (thanks for the patch to Daniele Forsi ) Closes: #780437 * cme fix dpkg-control -- Andreas Tille Mon, 18 May 2015 11:53:14 +0200 bamtools (2.3.0+dfsg-2) unstable; urgency=medium * Drop d-shlibs patch and add versioned Build-Depends for d-shlibs Closes: #753210 -- Andreas Tille Mon, 30 Jun 2014 09:50:50 +0200 bamtools (2.3.0+dfsg-1) unstable; urgency=low * Initial release (Closes: #692498) -- Andreas Tille Wed, 02 Apr 2014 13:11:47 +0200