beast-mcmc (1.10.4+dfsg-6) unstable; urgency=medium * Fix clean target Closes: #1043640 * Fix watch file * Standards-Version: 4.7.0 (routine-update) * d/copyright: review thanks to lrc -- Andreas Tille Sat, 21 Dec 2024 17:38:11 +0100 beast-mcmc (1.10.4+dfsg-5) unstable; urgency=medium * Team upload. * Refresh ignore_mac_install.patch. * Adjust update-ejml.patch to build with libejml-java 0.41. -- Andrius Merkys Thu, 24 Nov 2022 02:40:16 -0500 beast-mcmc (1.10.4+dfsg-4) unstable; urgency=medium * Fix watch file * Standards-Version: 4.6.1 (routine-update) -- Andreas Tille Tue, 01 Nov 2022 19:49:33 +0100 beast-mcmc (1.10.4+dfsg-3) unstable; urgency=medium [ Debian Janitor ] * Apply multi-arch hints. + beast-mcmc-examples: Add Multi-Arch: foreign. [ Andreas Tille ] * Fix watchfile to detect new versions on github * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * watch file standard 4 (routine-update) -- Andreas Tille Fri, 01 Oct 2021 12:46:38 +0200 beast-mcmc (1.10.4+dfsg-2) unstable; urgency=medium * Team upload. * Migrating to libejml-java 0.38. -- Andrius Merkys Wed, 13 Nov 2019 01:19:29 -0500 beast-mcmc (1.10.4+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * New upstream version * Exclude Latex doc creation * New Build-Depends: libejml-java * New versioned Build-Depends: libhmsbeagle-java (>= 3.0.2) * Standards-Version: 4.2.1 * Do not try to install mac and windows build [ Jelmer Vernooij ] * Use secure copyright file specification URI. * Trim trailing whitespace. [ Andreas Tille ] * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Tracer is not build in separate build_tracer.xml any more * Upstream does not ship PDF docs any more thus drop -doc package * Versioned (Build-)Depends: libhmsbeagle-java (>= 3.1.2~) -- Andreas Tille Tue, 18 Dec 2018 15:52:51 +0100 beast-mcmc (1.8.4+dfsg.1-3) unstable; urgency=medium [ Steffen Moeller ] * d/control: Standards-Version: 4.1.3 (no changes needed) * d/u/metadata: - added RRIDs - added \n to end of file [ Andreas Tille ] * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * debhelper 11 * Build-Depends: texlive-fonts-recommended [ Adrian Bunk ] * Fix encoding issues that caused FTBFS with TeX Live 2018 Closes: #896483 -- Andreas Tille Sat, 19 May 2018 08:28:51 +0200 beast-mcmc (1.8.4+dfsg.1-2) unstable; urgency=medium * Architecture: any Closes: #780428 * debhelper 10 * Standards-Version: 4.1.0 (no changes needed) * hardening=+all * d/rules: do not parse d/changelog -- Andreas Tille Mon, 04 Sep 2017 09:58:57 +0200 beast-mcmc (1.8.4+dfsg.1-1) unstable; urgency=medium * Drop packaging tools from upstream source * Add missing copyright * Fix section for all binary packages Closes: #829174 -- Andreas Tille Fri, 01 Jul 2016 11:08:37 +0200 beast-mcmc (1.8.4+dfsg-1) unstable; urgency=medium * New upstream version * debian/rules: export LC_ALL=C.UTF-8 to cope with encoding issues * Upload to unstable (main) -- Andreas Tille Tue, 28 Jun 2016 09:26:11 +0200 beast-mcmc (1.8.3+dfsg-1) experimental; urgency=medium * New upstream version * Upload to official Debian (experimental) * cme fix dpkg-control -- Andreas Tille Thu, 02 Jun 2016 14:41:23 +0200 beast-mcmc (1.8.2-1) unstable; urgency=medium * Adapt d/watch to changed release names * Rename new binary tracer to beast-tracer Closes: #813086 -- Andreas Tille Fri, 29 Jan 2016 16:03:31 +0100 beast-mcmc (1.8.2~754b844-2) unstable; urgency=medium * Depends: libnetlib-java * Force exact version match with libnucleotidelikelihoodcore0 * Add mtj.jar explicitly to classpath in wrapper script * Build tracer.jar as well -- Andreas Tille Thu, 28 Jan 2016 10:39:20 +0100 beast-mcmc (1.8.2~754b844-1) unstable; urgency=medium * New upstream version * d/watch: Point to Github (moved from Google Code) * Build-Depends: libcolt-free-java (instead of libcolt-java which leaves libmtj-java the last remaining dependency from contrib) * drop debian/get-orig-source since uscan can deal with all issues * d/copyright: * Adapt source location * More Files-Excluded * Bumped version in versioned Build-Depends: libhmsbeagle-dev (>= 2.1.2+20150609) * Bumped version in versioned Build-Depends: libjam-dev (>= 0.1.20140824) * Moved from SVN to Git -- Andreas Tille Sun, 19 Jul 2015 20:15:51 +0200 beast-mcmc (1.8.0-1) unstable; urgency=medium * New upstream version * libnucleotidelikelihoodcore0: Architecture: amd64 * d/watch: Stick to 1.x series of beast-mcmc * cme fix dpkg-control * fix encoding issue * Explicitly add multiarch library PATH to wrapper script to make sure libhmsbeagle-jni will be found * Add test but do not add autopkgtest control file for the moment (since contrib is not tested anyway) * Fix package description Closes: #716790 -- Andreas Tille Tue, 30 Sep 2014 18:15:36 +0200 beast-mcmc (1.7.5-1) unstable; urgency=low * New upstream version * Add debian/README.source explain why we stick to 1.7.x series for the moment -- Andreas Tille Thu, 30 May 2013 15:04:56 +0200 beast-mcmc (1.7.4-2) experimental; urgency=low * Add copyright license info for file (Closes: #698497). - src/dr/math/matrixAlgebra/RobustSingularValueDecomposition.java -- Olivier Sallou Sat, 23 Feb 2013 20:55:28 +0100 beast-mcmc (1.7.4-1) experimental; urgency=low * New upstream version (adapted patches) * debian/{control,rules}: use default java implementation thanks for the patch to James Page Closes: #683509 * debian/control: - rename beast-mcmc-lib to libnucleotidelikelihoodcore0 - Standards-Version: 3.9.4 (no changes needed) - do not depend from xterm any more - versioned (Build-)Depends from libhmsbeagle-java * Remove now unneeded lintian overrides * debian/patches/create_soname.patch: Create soname for library * debian/rules: silence pdflatex for better readable build logs -- Andreas Tille Mon, 17 Dec 2012 16:43:17 +0100 beast-mcmc (1.6.2-3) unstable; urgency=low * rename pixmap for menu to avoid name space conflict Closes: #680483 -- Andreas Tille Fri, 06 Jul 2012 11:30:19 +0200 beast-mcmc (1.6.2-2) unstable; urgency=low * debian/control: rename beast-doc to beast-mcmc-doc Closes: #679394 For consistency reasons also rename beast-examples to beast-mcmc-examples -- Andreas Tille Fri, 29 Jun 2012 11:24:51 +0200 beast-mcmc (1.6.2-1) unstable; urgency=low * Initial release. (Closes: #552101) -- Andreas Tille Tue, 05 Jun 2012 14:38:11 +0200