Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Source: http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.923.tar.gz Files: * Copyright: The Bioperl developers. PRIMARY AUTHORS AND MAJOR CONTRIBUTORS TO BIOPERL Releases co-ordinated and submitted by bioperl core devs. . . * Ewan Birney * Chris Dagdigian * Hilmar Lapp * Heikki Lehväslaiho * Jason Stajich * Lincoln Stein . Previous Bioperl Coordinators: . . * Steven Brenner * Georg Fuellen * Steve Chervitz . Major Contributors . * Richard Adams * Shuly Avraham - Bio::Graphics::Glyph * Sendu Bala * Peter Blaiklock * Benjamin Berman * Matthew Betts * David Block * Kris Boulez * Tim Bunce - code optimizations * Scott Cain - Bio::Graphics::Glyph * Yee Man Chan - Bio::Tools::dpAlign * Brad Chapman * Michele Clamp * Tony Cox * James Cuff * Andrew Dalke * Allen Day * Jared Fox - Bio::SeqIO::interpro * Brian O’Connor - Bio::TreeIO::svggraph * James Diggans * Peter Dimitrov - Bio::Ontology * Rich Dobson - Bio::Pop‐Gen::IO::hapmap,phase * Paul Edlefsen * Rob Edwards - Bio::Restriction * Arne Elofsson * David Evans * Christopher Fields * Mark Fiers * The Fugu Team * Luc Gauthier * James Gilbert * Nat Goodman * Ed Green * Matthew Hahn * Roger Hall * Todd Harris - SVG support in Bio::Graphics * Mauricio Herrera Cuadra * Ian Holmes * Shawn Hoon * Robert Hubley * Joseph Insana - Bio::LiveSeq * Donald Jackson - SiRNA * Keith James - Bio::Tools::Geneid * Nicolas Joly * Ian Korf * Dan Kortschak * Arek Kasprzyk * Andreas Kähäri * Charles C. Kim * Stefan Kirov - Bio::Matrix::PSM * Balamurugan Kumarasamy * Josh Lauricha - Bio::SeqIO::tigr * Eckhard Lehmann * Catherine Letondal * Philip Lijnzaad * Aaron Mackey * Brad Marshall * Chad Matsalla * Andrew Macgregor * Sheldon McKay * Juha Muilu * Chris Mungall * Giri Narasimhan * Brian Osborne * Xiaokang Pan - Bio::Graphics::Glyph * Jong Park * Matthew Pocock * Lorenz Pollack -- BPlite porting * Richard Resnick -- original Bio::Seq * Todd Richmond * Peter Schattner * Torsten Seemann -- Bio::Tools::Run::StandaloneBlast * Martin Senger -- Bio::Biblio * Nigam Shah * Shengqiang Shu - Bio::Graphics::Glyph * Allen Smith -- Bio::Matrix and Bio::SimpleAlign fixes * Marc Sohrmann * Robson Francisco de Souza - Bio::Assem‐bly * Mark Southern * Will Spooner * Arne Stabenau * Elia Stupka * Gert Thijs * James Thompson - Bio::Matrix::PSM protein-related modules. * Charles Tilford * Anthony Underwood * Paul-Christophe Varoutas * Andrew G. Walsh * Kai Wang * Gary Williams * Mark Wilkinson * Helge Weissig * Juguang Xiao * Alex Zelensky - Bioperl-DB * Peili Zhang * Christian M. Zmasek - Bio::Phenotype & Bio::Ontology License: Perl Comment: Everyone can use it! We don't care if you are academic, corporate, or government. BioPerl is licensed under the same terms as Perl itself, which means it is dually-licensed under either the Artistic or GPL licenses. The Perl Artistic License, or the GNU GPL covers all the legalese and what you can and can't do with the source code. . We do appreciate: . * You letting us know you sell or use a product that uses BioPerl. This helps us show people how useful our toolkit is. It also helps us if we seek funding from a government source, to identify the utility of the code to many different groups of users. Add your project and institution to our BioPerl Users page. . * If you fix bugs, please let us know about them. Because Bioperl is dual-licensed under the GPL or Artistic licenses, you can choose the Artistic license, which means that you are not required to submit the code fixes, but in the spirit of making a better product we hope you'll contribute back to the community any insight or code improvements. . * Please include the AUTHORS file and ascribe credit to the original BioPerl toolkit where appropriate. . * If you are an academic and you use the software, please cite the article. See the BioPerl publications for a list of papers which describe components in the toolkit. URL: see http://www.bioperl.org/wiki/Licensing_BioPerl Files: t/lib/Error.pm Copyright: © 1997-8 Graham Barr License: Perl Files: t/lib/Test/Builder/Tester/Color.pm License: Perl Copyright: © 2002 Mark Fowler Files: Bio/SeqIO/bsml.pm Copyright: © 2001 Charles Tilford License: LGPL-2.1+ This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2.1 of the License, or (at your option) any later version. . This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. . You should have received a copy of the GNU Lesser General Public License along with this library; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA Comment: On Debian systems, the complete text of the GNU Lesser General Public License version 2.1 can be found in ‘/usr/share/common-licenses/LGPL-2.1’. Files: Bio/SeqIO/msout.pm Bio/SeqIO/mbsout.pm Copyright: Public Domain work License: public-domain This software/database is ``United States Government Work'' under the terms of the United States Copyright Act. It was written as part of the authors' official duties for the United States Government and thus cannot be copyrighted. This software/database is freely available to the public for use without a copyright notice. Restrictions cannot be placed on its present or future use. . Although all reasonable efforts have been taken to ensure the accuracy and reliability of the software and data, the National Human Genome Research Institute (NHGRI) and the U.S. Government does not and cannot warrant the performance or results that may be obtained by using this software or data. NHGRI and the U.S. Government disclaims all warranties as to performance, merchantability or fitness for any particular purpose. License: Perl This program is free software; you can redistribute it and/or modify it under the terms of either: . a) the GNU General Public License as published by the Free Software Foundation; either version 1, or (at your option) any later version, or . b) the "Artistic License" which comes with Perl. Comment: On Debian systems, the complete text of the Artistic License can be found in ‘/usr/share/common-licenses/Artistic’, and the complete text of the GNU General Public License version 1 can be found in ‘/usr/share/common-licenses/GPL-1’. Files: debian/* Copyright: © 1999 Stéphane Bortzmeyer © 2001 Dr. Guenter Bechly © 2001 Adrian Bunk © 2001—2004 Matt Hope © 2007—2011 Charles Plessy © 2008 David Paleino © 2008 Nelson A. de Oliveira License: unclear The license under which is placed the work of the earlier contributors is unknown. The work of Charles Plessy can be treated as if it were public domain.