bowtie (1.1.1-2) unstable; urgency=high * Team upload. * Install missing commands. Closes: #776881. -- Charles Plessy Tue, 03 Feb 2015 10:44:39 +0900 bowtie (1.1.1-1) unstable; urgency=medium * New upstream release * cme fix dpkg-control * Another patch to build with SeqAn 1.4 (Thanks to Gert Wollny) * Add Depends: python (also Build-Depends since it is used in tests) -- Andreas Tille Thu, 02 Oct 2014 14:32:50 +0200 bowtie (1.0.1-3) unstable; urgency=medium * Drop all architectures except amd64 since there was no success in trying to port the code to other architectures. The portability patch introduced in the last revision was droped again * debian/copyright: Drop unneeded copyright statements about code that was removed from upstream source -- Andreas Tille Mon, 15 Sep 2014 11:00:25 +0200 bowtie (1.0.1-2) unstable; urgency=medium * Do not use copy of outdated gcc header file which destroys portability to other architectures Closes: #756780 * Add README.Debian informing users about the fact that we ignore copy of cpuid.h * Add unit tests for build time and autopkgtest * Add debian/README.test to explain how to test the package Attention: Please take notice of /usr/share/bowtie/README.Debian about "Test suite for bowtie created and potential issue with sorting" -- Andreas Tille Wed, 03 Sep 2014 09:50:22 +0200 bowtie (1.0.1-1) unstable; urgency=medium * New upstream version (adapted patches) * drop debian/get-orig-source but rather remove the SeqAn-1.1 code copy via Files-Excluded * debian/control: Priority: optional -- Andreas Tille Wed, 30 Jul 2014 13:38:25 +0200 bowtie (1.0.0-6) unstable; urgency=low * debian/patches/seqan-popcount.patch: New patch. (Closes: #733398) * Version 1.4 of seqan-dev is required now. * Standards-Version: 3.9.5 (no changes needed). * Updated Vcs-Svn and Vcs-Browse fields as per Debian-Med policy. -- Ognyan Kulev Sat, 08 Mar 2014 15:13:16 +0200 bowtie (1.0.0-5) unstable; urgency=low * Fixed (hopefully) FTBFS by using override_dh_fixperms-indep target instead of override_dh_fixperms in debian/rules. -- Ognyan Kulev Thu, 30 May 2013 09:41:25 +0300 bowtie (1.0.0-4) unstable; urgency=low * Lintian fixes: - Removed DM-Upload-Allowed field. - Standards Version 3.9.4 (no changes needed). - Remove execute bits on some files in bowtie-examples. * Don't compress *.ebwt index files in bowtie-examples package. * Package description now starts with a capital letter. -- Ognyan Kulev Wed, 29 May 2013 22:53:13 +0300 bowtie (1.0.0-3) unstable; urgency=low * New patch no_hash_style_both_for_mips.patch. This fixes build errors on mips and mipsel. -- Ognyan Kulev Wed, 24 Apr 2013 15:15:37 +0300 bowtie (1.0.0-2) unstable; urgency=low * Requires version 1.3 of SeqAn. * Updated README.source about using Debian's SeqAn library. * Removed machine_bits_detection.patch and added disable_bits_flag.patch. -- Ognyan Kulev Wed, 24 Apr 2013 10:49:47 +0300 bowtie (1.0.0-1) unstable; urgency=low * New upstream version. (Closes: #705616) * Refreshed patches: use_debian_seqan.patch, use-dpkg-buildflags.patch. * Removed patch gcc-4.7.patch (fixed upstream). * New patch machine_bits_detection.patch. * Added build dependancy on seqan-dev. * Activated use_debian_seqan.patch and added the following patches: - seqan-fix-setBegin-call.patch - seqan-rename-ChunkPool.patch - seqan-rename-fill-to-resize.patch * Added myself to Uploaders control field. -- Ognyan Kulev Tue, 23 Apr 2013 16:43:49 +0300 bowtie (0.12.7-3) unstable; urgency=low * debian/patches/use-dpkg-buildflags.patch: Regard LDFLAGS/CPPFLAGS hardening flags (thanks for the patch to Simon Ruderich ) Closes: #670230 -- Andreas Tille Tue, 24 Apr 2012 13:21:32 +0200 bowtie (0.12.7-2) unstable; urgency=low * Do not give a pointer to non existing info pages in manpages * debian/control: - fixed Vcs fields - Standards-Version: 3.9.3 (no changes needed) * debian/upstream: Add citation information * debian/rules: calculate pkg name instead of setting it * debian/copyright: DEP5 verified using cme fix dpkg-copyright * debian/patches/gcc-4.7.patch: function "reverseInPlace" is declared after the function is used Thanks to Rodolfo García Peñas and gregor herrmann Closes: #667120 * debhelper 9 (control+compat) Hardening flags were explicitly tested but not enforced in debian/rules -- Andreas Tille Sun, 22 Apr 2012 21:09:05 +0200 bowtie (0.12.7-1) unstable; urgency=low * Initial release (Closes: #604940) -- Andreas Tille Wed, 02 Feb 2011 13:47:12 +0100