cnvkit (0.9.12-1) unstable; urgency=medium
* New upstream version
* Standards-Version: 4.7.0 (routine-update)
* Removed spelling patch, it was applied upstream. Remaining patches
were refreshed.
* d/control: build-dep on the new python3-pomegranate that supports
numpy 2.x.
* Include patch from upstream for numpy 2.x support.
* d/{install,rules,pybuild.testfiles}: simplify and modernize
* Add my own patch to fix one last numpy 2.x issue: Use `np.bytes_`
instead of `np.string_`.
* d/patches/controldir: fix link to the Debian bug.
-- Michael R. Crusoe <crusoe@debian.org> Thu, 06 Feb 2025 15:23:25 +0100
cnvkit (0.9.10-2) unstable; urgency=medium
* No-change rebuild of the package from experimental for unstable.
-- Michael R. Crusoe <crusoe@debian.org> Mon, 08 Apr 2024 10:42:20 +0200
cnvkit (0.9.10-2~0exp) experimental; urgency=medium
* Test "Arch: all" upload to experimental
* d/control: the binary package is architecture independent.
* d/patches/spelling: forwarded upstream.
* d/control: build the PEP-517 way with pybuild-plugin-pyproject.
* d/control: also run the built-in tests as autopkgtests.
* d/rules: move items into d/clean.
* d/tests: skip-not-installable for s390x and others where python3-
pysam isn't available.
* d/control: add riscv64 to the arch list.
-- Michael R. Crusoe <crusoe@debian.org> Tue, 05 Mar 2024 10:11:04 +0100
cnvkit (0.9.10-1) unstable; urgency=medium
* Team upload.
[ Andreas Tille ]
* New upstream version
* Standards-Version: 4.6.2 (routine-update)
* Drop Build-Depends python3-future
Closes: #1059947
* Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
* Use secure URI in Homepage field.
[ Nilesh Patra ]
* Add patch to ignore test warnings
-- Andreas Tille <tille@debian.org> Fri, 05 Jan 2024 16:18:13 +0100
cnvkit (0.9.9-2) unstable; urgency=medium
* Team Upload.
* Re-diff patches (refresh)
* d/rules: do not run tests in parallel
-- Nilesh Patra <nilesh@debian.org> Fri, 15 Oct 2021 12:11:06 +0530
cnvkit (0.9.9-1) unstable; urgency=medium
* Fix watchfile to detect new versions on github (routine-update)
* New upstream version
* Standards-Version: 4.6.0 (routine-update)
* watch file standard 4 (routine-update)
-- Michael R. Crusoe <crusoe@debian.org> Mon, 13 Sep 2021 19:06:06 +0200
cnvkit (0.9.8-1) unstable; urgency=medium
[ Steffen Moeller ]
* Added symbolic link from /usr/lib/debian-med/bin/cnvkit.py
to /usr/bin/cnvkit.py
bcbio explicitly looks in /usr/bin, though.
[ Michael R. Crusoe ]
* New upstream version
* Standards-Version: 4.5.1 (routine-update)
* debhelper-compat 13 (routine-update)
* debian/control: mips64el is not supported by upstream, remove it
Closes: #962743
-- Michael R. Crusoe <crusoe@debian.org> Fri, 01 Jan 2021 16:17:10 +0100
cnvkit (0.9.7-1) unstable; urgency=medium
* New upstream version
* Standards-Version: 4.5.0 (routine-update)
* Refreshed the patches
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
-- Michael R. Crusoe <crusoe@debian.org> Mon, 01 Jun 2020 16:19:46 +0200
cnvkit (0.9.6-3) unstable; urgency=medium
* Don't run the autopkgtests in parallel.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Tue, 07 Jan 2020 11:48:23 +0100
cnvkit (0.9.6-2) unstable; urgency=medium
* Support more architectures (Closes: #942582)
* Tests pass with the latest python3-pandas. (Closes: #944041)
-- Michael R. Crusoe <michael.crusoe@gmail.com> Wed, 13 Nov 2019 18:57:24 +0100
cnvkit (0.9.6-1) unstable; urgency=medium
* New upstream version
* debhelper-compat 12
* Standards-Version: 4.4.0
-- Steffen Moeller <moeller@debian.org> Wed, 28 Aug 2019 19:31:59 +0200
cnvkit (0.9.5-3) unstable; urgency=medium
* Fix buster rebuilds (Closes: #925568)
d/patches/controldir.patch
-- Olivier Sallou <osallou@debian.org> Wed, 27 Mar 2019 08:00:39 +0000
cnvkit (0.9.5-2) unstable; urgency=medium
[ Jelmer Vernooij ]
* Use secure copyright file specification URI.
* Trim trailing whitespace.
[ Michael R. Crusoe ]
* Remove trailing whitespace in debian/rules
* Standards-Version: 4.3.0
* Run the included tests as autopkgtests.
* Mark cnv_expression_correlate as a script
* amd64 only, due to the realities of where python-pysam is available.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Sun, 06 Jan 2019 04:12:46 -0800
cnvkit (0.9.5-1) unstable; urgency=medium
* Team upload.
* New upstream version
* debhelper 11
* Standards-Version: 4.2.0
-- Andreas Tille <tille@debian.org> Mon, 13 Aug 2018 13:02:24 +0200
cnvkit (0.9.3-2) unstable; urgency=medium
* Add missing build-dep on python3-future. (Closes: #901877)
* debian/rules: fix override_dh_auto_test-does-not-check-DEB_BUILD_OPTIONS
-- Michael R. Crusoe <michael.crusoe@gmail.com> Tue, 19 Jun 2018 15:05:43 -0700
cnvkit (0.9.3-1) unstable; urgency=medium
* New upstream version.
* Initial release. (Closes: #828176)
* Policy 4.1.4 compliance
* Moved to python3
* Cleaning test tmp results
-- Steffen Moeller <moeller@debian.org> Fri, 15 Jun 2018 12:03:11 +0200
cnvkit (0.9.0-1) UNRELEASED; urgency=medium
* Debianisation.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Sat, 25 Jun 2016 10:57:17 -0700