dipy (1.10.0~rc1-2) unstable; urgency=medium * Team upload. * Revert the running of the tests in parallel. -- Michael R. Crusoe Thu, 21 Nov 2024 17:16:28 +0100 dipy (1.10.0~rc1-1) unstable; urgency=medium * Team upload. * Forward python3 patch to upstream. * Snapshot of https://github.com/dipy/dipy/pull/3364/ (preparation for a 1.10.0 release). Closes: #1081694 * Refreshed patches. * Improve privacy patch * d/patches/tests_tempdir: added * Standards-Version: 4.7.0 (routine-update) * d/rules: adjust how xvfb is used to run the tests. * Run the tests in parallel * Run the tests with pybuild and the autopkgtests using pybuild-autopkgtest -- Michael R. Crusoe Tue, 19 Nov 2024 19:03:18 +0100 dipy (1.9.0-8) unstable; urgency=medium * Pandas is optional, move it to Recommends; skip it as a build-dep on mips64el for now. -- Michael R. Crusoe Tue, 24 Sep 2024 15:16:36 +0200 dipy (1.9.0-7) unstable; urgency=medium * Team upload. * d/tests/control: python3-tables is not required on s390x. Also, don't skip any extra tests just for s390x. -- Michael R. Crusoe Tue, 24 Sep 2024 14:39:33 +0200 dipy (1.9.0-6) unstable; urgency=medium * Team upload. * Cherry-pick patch from upstream to add Python 3.13 support. Closes: #1081694 * Backport patch from upstream for better big-endian compatibility. * d/control: drop python3-tables build-dep for s390x, it is optional and not currently available. * d/patches/improve-fibonacci_sphere-reliability: adapted a fix from upstream to improve the reliability of a test. * Added patch to avoid syntax warnings from LaTeX embedded in docstrings * Link docs against python3-doc * d/control: drop "python-is-python3"; added patch to not need this * Improve cross-building by adjusting the python*-dev dependencies as per https://wiki.debian.org/CrossBuildPackagingGuidelines#Python_extensions * d/rules: drop special handling of s390x * d/rules: deep the sphinx object.inv in the -doc package * d/control: add build-dep on pkgconf to silence warning. * Added patch to remove some flaky test assertions about execution durations -- Michael R. Crusoe Mon, 23 Sep 2024 14:07:44 +0200 dipy (1.9.0-5) unstable; urgency=medium * Team upload. * d/tests/run-unit-test: skip test_check_img_shapes on all 32-bit archs. Closes: #1071448 -- Michael R. Crusoe Fri, 21 Jun 2024 15:06:36 +0200 dipy (1.9.0-4) unstable; urgency=medium * Team upload. * d/tests/run-unit-test: fix i386 autopkgtest * d/patches/relay_comparison: forwarded upstream -- Michael R. Crusoe Tue, 18 Jun 2024 15:03:21 +0200 dipy (1.9.0-3) unstable; urgency=medium * Team upload. * Skip the test_check_img_shapes on 32-bit systems. Closes: #1071448 -- Michael R. Crusoe Wed, 22 May 2024 17:19:21 +0200 dipy (1.9.0-2) unstable; urgency=medium * Team upload. [ Graham Inggs ] * Fix FTBFS when built with the 'nocheck' profile Closes: #1070515 [ Andreas Tille ] * Standards-Version: 4.7.0 (routine-update) [ Étienne Mollier ] * d/control: python3-nibabel is also needed for the doc. [ Michael R. Crusoe ] * d/control: h5py, trx, and tqdm are also required to build the docs. * Added test patch to fix pytest module-level setup. Closes: #1068146 * Standards-Version: 4.6.2 (routine-update) * d/control: remove obsolete "XB-Python3-Version" field. -- Michael R. Crusoe Fri, 10 May 2024 19:12:08 +0200 dipy (1.9.0-1) unstable; urgency=medium * New upstream version 1.9.0 * skip-tests-needing-internet.patch: refresh. * deb_no_sources_for_docs patch: unfuzz. * no-network.patch: unfuzz. * skip-stringent-test.patch: remove. Patched files disappeared upstream. * sphinx-default.patch: refresh. * fix-privacy-breaches.patch: refresh. * fix-endianness.patch: remove: applied upstream. * clear-cython.patch: remove: applied upstream. * d/{rules,t/run-unit-test}: extend net skipping. Some of the test initially skipped though patch were not applying properly anymore. This change puts the skipping logic in test driver invocation, in order to reduce the overhead of rebasing patches. -- Étienne Mollier Sun, 17 Mar 2024 18:03:49 +0100 dipy (1.8.0-2) unstable; urgency=medium * fix-endianness.patch: new: fix test failure on s390x. * fix-privacy-breaches.patch: declare forwarding not needed. * clear-cython.patch: new: remove cython dependency. (Closes: #1060438) * d/rules: skip long tests at build time. This is an attempt to significantly reduce build time, notably on slow builders like armel or riscv64, the latter having been hogged for more than thirteen hours. Tests have also more verbose output to ease time stamping, in case other tests still affect significantly total time. * d/rules: merge s390x and long test skip specs. This rationalizes the way specifications are handled and resolves problems caused by stateful changes caused by raw removal of files in the s390x case. * d/t/*: move tests to script run-unit-test. This makes modifications to the test command easier to read, and also facilitates future editions. The new test also ensures all supported python3 versions are indeed tested, and it includes an exclusion list in order to avoid running into debci time limits. (Closes: #1058661) * d/t/run-unit-test: also skip s390x tests. * d/rules,d/t/run-unit-test: warn that skips must be consistent. * d/rules: remove unused variable related to cython version. -- Étienne Mollier Mon, 15 Jan 2024 20:49:26 +0100 dipy (1.8.0-1) unstable; urgency=medium * New upstream version 1.8.0 (Closes: #1060176) * Patches deleted after application upstream: python3, crossbuild.patch, spelling-error-in-binary.patch, and fix-invalid-version.patch. * Patches refreshed: deb_no_sources_for_docs patch, skip-tests-needing-internet.patch, skip_wall-clock_test.patch, no-network.patch, skip-stringent-test.patch and relay_comparison.patch. * d/{control,rules}: migrate to dh-sequence-python3. * d/control: build depends on pybuild-plugin-pyproject and python3-mesonpy. * d/control: doc build depends on python3-skimage and python3-sphinx-design. * d/control: build time tests now depend on python3-trx-python. * d/control: python-dipy-doc depends on libjs-sphinxdoc & node-mathjax-full. * d/t/control: remove needs-internet restriction. The test suite is in a state that works appropriately without Internet. * d/rules: declare matplotlib backend in environment. * d/rules: slight attempt at improving the general readability. * d/rules: fix the build date in documentation. * d/rules: update dist-packages cleanup pattern. * d/rules: replace references to cdn jsdelivr by uses of a local file. * d/rules: remove embedded sphinx javascript. This is done in favor of using links to the canonical scripts instead. * d/rules: introduce dh_fixperms scripting. This fixes a couple of occurrences of executables not elf nor scripts. * d/python3-dipy.install: copy all example files instead of just scripts. * d/python-dipy-doc.links: point to libjs-sphinxdoc scripts. * sphinx-default.patch: new: apply default theme. This avoids depending on grg theme not available yet. * skip-tests-needing-internet.patch: skip more tests. * fix-i386.patch: zero precision for test_ascm_accuracy. The test is not capable of decimal precision on i386, and possibly other 32-bit cpu architectures. * fix-privacy-breaches.patch: new: uninline youtube video. -- Étienne Mollier Wed, 10 Jan 2024 22:26:24 +0100 dipy (1.7.0-4) unstable; urgency=medium * Team upload. * Take over the suggested solution by Drew Parsons to avoid comparison of floating point numbers Closes: #1053265 -- Andreas Tille Tue, 07 Nov 2023 14:10:28 +0100 dipy (1.7.0-3) unstable; urgency=medium * Team upload. [ Nathan Pratta Teodosio ] * skip-streamwarp-test-in-big-endian.patch: skip streamwarp tests in big endian architectures (Closes: #1050037). [ Michael R. Crusoe ] * d/patches: update forwarding status * d/control, d/clean, d/rules: cleanup better after a build. Closes: #1044608 * d/patches/python3: rewrite some hashbang headers that dh_python missed -- Michael R. Crusoe Thu, 28 Sep 2023 10:48:22 +0200 dipy (1.7.0-2) unstable; urgency=medium * skip-stringent-test.patch: new: skip a failing test. The test_cross is too stringent and only succeeds on a couple of architectures like amdd64 and similar. This fixes ftbfs on arm64, ppc64el, riscv64 and possibly others. This is not sufficient to resolve the additional failures seen on big endian systems though. -- Étienne Mollier Fri, 18 Aug 2023 15:45:57 +0200 dipy (1.7.0-1) unstable; urgency=medium * New upstream version 1.7.0 * d/control: cleanup build dependency on ancient nibabel version. * d/rules: replace html-after-examples by html target. html-after-examples has been replaced by html-after-examples-legacy, which looks to be mostly the same as the new html target (which in turn also has an html-legacy target) * d/rules: fix shebangs as python is not python3. * d/rules: remove inc_static.nii.gz from python3 modules directory. * no-network.patch: added; skip sphinx gallery. The sphinx gallery only works when accessing Internet resources. * skip-tests-needing-internet.patch: update. There is one new test which requires being skipped due to requiring Internet access. * deb_no_sources_for_docs patch: refresh. * crossbuild.patch: refresh. * spelling-error-in-binary.patch: refresh; partially applied upstream. * fix-invalid-version.patch: new patch. This fixes failure to build the documentation due to a trailing dot landing somehow in the module version. -- Étienne Mollier Tue, 18 Jul 2023 18:25:16 +0200 dipy (1.6.0-1) unstable; urgency=medium * Team upload. * New upstream version -- Andreas Tille Fri, 27 Jan 2023 19:35:20 +0100 dipy (1.5.0-7) unstable; urgency=medium * Team upload. * Do not measure wall-clock time (thanks for the patch to Rebecca N. Palmer) Closes: #1029533 -- Andreas Tille Tue, 24 Jan 2023 20:12:50 +0100 dipy (1.5.0-6) unstable; urgency=medium * Team upload. * Add upstream patch to work with numpy 1.24 -- Andreas Tille Mon, 09 Jan 2023 19:00:33 +0100 dipy (1.5.0-5) unstable; urgency=medium * d/control: recommend python3-vtk9 instead of vtk7. * d/t/control: bump to vtk9 in test dependencies too. The missing dependency on python3-vtk7 seems to have caused a red herring in numpy 1.24 transition. (Closes: #1027200) * d/copyright: bump copyright year. * d/control: declare compliance to standards version 4.6.2. * d/rules: make data file not executable. * d/*.lintian-overrides: fix mismatched override. -- Étienne Mollier Sat, 07 Jan 2023 13:14:10 +0100 dipy (1.5.0-4) unstable; urgency=medium * Team Upload. * d/rules: Ignore dh_dwz if it fails (currently failing on armel) -- Nilesh Patra Sat, 26 Mar 2022 13:39:31 +0530 dipy (1.5.0-3) unstable; urgency=medium * Team Upload. * d/rules: Ignore another test on s390x -- Nilesh Patra Thu, 24 Mar 2022 20:46:34 +0530 dipy (1.5.0-2) unstable; urgency=medium * Team Upload. * d/rules: Ignore some tests on s390x -- Nilesh Patra Thu, 24 Mar 2022 15:29:17 +0530 dipy (1.5.0-1) unstable; urgency=medium * Team Upload. [ Andreas Tille ] * Lintian-override for package-contains-documentation-outside-usr-share-doc * Simplify dh_python3 override * Build-Depends: python3-setuptools [ Étienne Mollier ] * Add autopkgtests (Closes: #994575) * Add skip-tests-needing-internet.patch * d/rules: rework the test suite to use pytest instead of nosetest * d/control: remove dependency on python3-nose * d/control: add test build-dep to python3-tk * d/control: add test build-dep on python3-pil.tkinter [ Nilesh Patra ] * Fixing autopkgtest by testing in the installed dipy (not source) * d/salsa-ci.yml: Disable reprotest * Fix build on i386 (failing due to precision errors) * Copy dipy/data in autopkgtest suite as well * Skip running examples as autopkgtest for now - these consume a lot of resources and might be unsuited for our runners. -- Nilesh Patra Wed, 23 Mar 2022 13:10:42 +0000 dipy (1.4.1-1) unstable; urgency=medium [ Helmut Grohne ] * Demote documentation dependencies to B-D-I. (Closes: #983840) [ Étienne Mollier ] * New upstream version 1.4.1. * d/watch: fix broken link to Github and refer through https instead of http. * Standards-Version: 4.6.0 (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Apply multi-arch hints. + python3-dipy-lib: Add Multi-Arch: same. + python-dipy-doc: Add Multi-Arch: foreign. * d/control, crossbuild.patch: demote python3-h5py, -nibabel and -tqdm build-dependencies as , and prevent setup.py to forcefully ask for the corresponding modules; this enables cross compilation. (Also demote python3-scipy to reduce the load on nocheck build profiles.) * d/control, d/rules: make python-dipy-doc depend on libjs-mathjax, and avoid one to refer to mathjax online while reading the documentation, which would otherwise be a privacy breach. * d/control: add myself to uploaders. * d/rules: make all example scripts not executable, for consistency. * d/rules: enable hardening. * d/copyright: update copyright years. * add spelling-error-in-binary.patch. -- Étienne Mollier Sat, 18 Sep 2021 12:58:08 +0200 dipy (1.3.0-3) unstable; urgency=medium * Team upload. * d/rules: prevent build time test suite from accessing network resources. Closes: #987517 * d/rules: install .so files in python3-dipy-lib; this makes several dipy modules, formerly missing, now usable. Closes: #987453 -- Étienne Mollier Sun, 25 Apr 2021 11:15:12 +0200 dipy (1.3.0-2) unstable; urgency=medium * Team upload. [ Helmut Grohne ] * Tag more test dependencies . (Closes: #980336) -- Andreas Tille Wed, 20 Jan 2021 11:52:53 +0100 dipy (1.3.0-1) unstable; urgency=medium * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) * watch file standard 4 (routine-update) * (Build-)Depends: python3-tqdm -- Andreas Tille Sun, 17 Jan 2021 15:34:26 +0100 dipy (1.2.0-2) unstable; urgency=medium * Team upload. * Secure URI in copyright format (routine-update) * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine- update) * Remove trailing whitespace in debian/changelog (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Use secure URI in Homepage field. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. -- Andreas Tille Mon, 02 Nov 2020 08:57:11 +0100 dipy (1.2.0-1) unstable; urgency=medium [ Yaroslav Halchenko ] * debian/ + provide python3 packaging + suggest python-dipy-doc (Closes: #849904) [ Andreas Tille ] * cme fix dpkg-control * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-python (routine-update) * Drop Python2 package Closes: #936400, #942973, #923657 * Versioned Build-Depends: python3-nibabel (>= 3.0.0) * Make Debian Med team maintainer and move package to med-team on Salsa * Remove debian/gbp.conf since repository now follows default layout as described in policy * Remove unused debian/blends file * Remove outdated debian/README.source * debhelper-compat 13 (routine-update) * Remove debian/cythonized-files * (Build-)Depends: pandas -- Andreas Tille Sat, 31 Oct 2020 22:37:04 +0100 dipy (0.14.0-1) unstable; urgency=medium * Fresh upstream release * debian/ - pushed compat to 9 - removed absorbed upstream debian/patches/1300.diff - build-depend on python-numpydoc -- Yaroslav Halchenko Mon, 14 May 2018 14:59:42 -0400 dipy (0.13.0-2) unstable; urgency=medium * debian/patches/1300.diff to mitigate failing tests on 32bit -- Yaroslav Halchenko Sat, 25 Nov 2017 00:41:46 -0500 dipy (0.13.0-1) unstable; urgency=medium * Fresh upstream release * debian/control - python-h5py was added to (Build-)Depends and python-tables was removed from Depends -- Yaroslav Halchenko Wed, 22 Nov 2017 21:23:41 -0500 dipy (0.12.0-1) unstable; urgency=medium * Fresh upstream release - upstream requires cython >= 0.25.1 for recythonization -- Yaroslav Halchenko Mon, 03 Jul 2017 23:19:57 -0400 dipy (0.11.0-1) unstable; urgency=medium * Fresh upstream release * debian/control - changed Priority to extra to be inline with suite overrides - boost policy to 3.9.7 (no extra changes) -- Yaroslav Halchenko Sun, 21 Feb 2016 19:09:50 -0500 dipy (0.10.1-1) unstable; urgency=medium [ Michael Hanke ] * Upload to unstable (Closes: #785991). * Update maintainer email. * Modify build to enable reproducible build (Closes: #789747). Patch is courtesy of Juan Picca . [ Yaroslav Halchenko ] * Fresh upstream release * debian/patches/up_numpy_compat-PR858.patch - for compatibility with numpy 1:1.11.0~b2 -- Yaroslav Halchenko Mon, 08 Feb 2016 20:04:07 -0500 dipy (0.9.2-1) experimental; urgency=medium * New upstream release * debian/control - limit to python >= 2.7 to avoid problem while testing scripts while having two Python versions supported (see https://github.com/nipy/dipy/issues/354#issuecomment-69251564) -- Yaroslav Halchenko Thu, 19 Mar 2015 22:55:37 -0400 dipy (0.8.0-1) experimental; urgency=medium * New upstream release * debian/{control,rules} - migrated from using python-support * debian/copyright - various small tune ups to satisfy format -- Yaroslav Halchenko Wed, 07 Jan 2015 17:07:25 -0500 dipy (0.7.1+git1225-gb048445-1) UNRELEASED; urgency=medium * Fresh upstream snapshot * debian/control - added libgomp1 to b-depends to facilitate build/testing OPENMP code - policy boost to 3.9.6 * debian/patches -- slight adjustments * debian/rules - clean away Cython generated files -- Yaroslav Halchenko Mon, 29 Dec 2014 22:34:46 -0500 dipy (0.7.1-2) unstable; urgency=medium [ Andreas Tille ] * Team upload. * Fix DEP5 format specification * debian/control: - Set Vcs fields to anonscm.debian.org - Priority: optional * debian/blends, debian/upstream/metadata: Move publication data where they belong to [ Yaroslav Halchenko ] * Exclude peaksFromModelParallel from testing for now due to obscure permission issue -- Yaroslav Halchenko Wed, 13 Aug 2014 10:18:32 -0400 dipy (0.7.1-1) unstable; urgency=low * New upstream release * debian/patches - dropping deb_interpreter_for_scripts_tests, changeset* patches -- adopted upstream - adding up_AE_test_fixup_i386 to overcome test failures on 32bit * debian/control - boost policy to 3.9.5 (no further changes due) -- Yaroslav Halchenko Fri, 17 Jan 2014 09:41:26 -0500 dipy (0.6.0-2) unstable; urgency=low * Upload to unstable -- Yaroslav Halchenko Wed, 23 Oct 2013 21:25:04 -0400 dipy (0.6.0-1) experimental; urgency=low * New upstream release - includes patches/up_explicit_cdefs_inits (dropped) * debian/watch - updated to fetch from github's tags * debian/changelog - updated years * debian/source/options - added to ignore generated COMMIT_INFO.txt * debian/rules - export http_proxy=http://127.0.0.1:9 to prevent any downloads - point PATH to the installed bin/ for tests to test example scripts - added cythonization so we could build backports with cython < 0.17.3 * debian/control - provide X-Python-Version: >= 2.6 just to avoid warnings - boosted policy to 3.9.4 (no further changes) -- Yaroslav Halchenko Tue, 02 Apr 2013 11:57:30 -0400 dipy (0.5.0-3) unstable; urgency=low * Added patch up_explicit_cdefs_inits to prevent FTBFS with cython >= 0.15 -- Yaroslav Halchenko Tue, 20 Sep 2011 15:37:06 -0400 dipy (0.5.0-2) unstable; urgency=low * Upload to unstable * Fixed binary-arch build -- extensions were not installed. Thanks Jiří Keller for the report * Fixed ${Python:depends} -> ${python:Depends} (thanks Lintian) * Boosted policy to 3.9.2 (no changes are due) -- Yaroslav Halchenko Fri, 01 Jul 2011 13:55:03 -0400 dipy (0.5.0-1) experimental; urgency=low * Initial release (Closes: #610347) -- Yaroslav Halchenko Wed, 09 Feb 2011 17:38:53 -0500 dipy (0.5.0~dev20110117-1~pre1) UNRELEASED; urgency=low * Initial packaging. -- Yaroslav Halchenko Mon, 17 Jan 2011 15:13:17 -0500