exonerate (2.4.0-4) unstable; urgency=medium [ Jelmer Vernooij ] * Trim trailing whitespace. * Use secure copyright file specification URI. [ Andreas Tille ] * Point Vcs fields to salsa.debian.org * Standards-Version: 4.3.0 * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target -- Andreas Tille Sun, 06 Jan 2019 22:02:34 +0100 exonerate (2.4.0-3) unstable; urgency=medium [ Steffen Moeller ] * debian/upstream/metadata: Added references to registries. [ Helmut Grohne ] * make pkg-config macro cross compilation safe Closes: #888032 [ Andreas Tille ] * debhelper 11 * Standards-Version: 4.1.3 -- Andreas Tille Tue, 23 Jan 2018 11:37:37 +0100 exonerate (2.4.0-2) unstable; urgency=medium [ Canberk Koç ] * Team upload * debian/tests: added testsuite * debian/rules: changes for testing [ Andreas Tille ] * cme fix dpkg-control -- Canberk Koç Wed, 18 May 2016 14:11:15 +0200 exonerate (2.4.0-1) unstable; urgency=medium * New upstream version * Moved packaging from SVN to Git * Better hardening -- Andreas Tille Sun, 20 Mar 2016 12:24:30 +0100 exonerate (2.2.0-7) unstable; urgency=low [ Charles Plessy ] * renamed debian/upstream-metadata.yaml to debian/upstream/metadata [ Andreas Tille ] * debian/upstream/metadata: - Took over some detail from tasks file; moved DOI+PMID to References - Added eprint * debian/reference removed in favour of debian/upstream/metadata * debian/copyright: Deleted bouncing upstream contact address * fixed upstream homepage * fix watch file * do not maintain duplicated information in debian/upstream/metadata * cme fix dpkg-control * debhelper 9 * DEP5 * fix spelling and manpage syntax issues * remove outdated README.Debian -- Andreas Tille Mon, 11 Jan 2016 09:54:39 +0100 exonerate (2.2.0-6) unstable; urgency=low * debian/patches/autoreconf.patch: Removed because not needed when using dh-autoreconf -- Andreas Tille Thu, 12 Jan 2012 11:29:32 +0100 exonerate (2.2.0-5) unstable; urgency=low * Rather use dh-autoreconf as advised in another patch from Micah Gersten (thanks for your patience) Finally Closes #651802 -- Andreas Tille Thu, 12 Jan 2012 11:11:06 +0100 exonerate (2.2.0-4) unstable; urgency=low * Use autotools_dev properly Closes: #651802 -- Andreas Tille Fri, 06 Jan 2012 23:04:31 +0100 exonerate (2.2.0-3) unstable; urgency=low [ Charles Plessy ] * Documented some meta-information in ‘debian/upstream-metadata.yaml’. [ Andreas Tille ] * debian/source/format: 3.0 (quilt) * debian/control: - Standards-Version: 3.9.2 (no changes needed) - Fixed Vcs fields * Debhlper 8 (control+compat) * debian/copyright: some DEP5 changes * debian/patches/fix_build-as-needed.patch: Fix build with --as-needed (Thanks to Micah Gersten ) Closes: #651802 * debian/patches/autoreconf.patch: Build with recent autotools * debian/patches/manpages.patch: Fix some lintian warnings * debian/rules: - Convert to short dh notation - Remove codegen in clean target - Install upstream changelog only once -- Andreas Tille Mon, 12 Dec 2011 13:13:02 +0100 exonerate (2.2.0-2) unstable; urgency=low [ Charles Plessy ] * debian/control: - Enhances bioperl-run instead of bioperl. - Incremented Standards-Version to reflect conformance with Policy 3.8.3 (no changes needed). [ Andreas Tille ] * debian/control - s/libreadline5-dev/libreadline-dev/ - s/Debian-Med/Debian Med/ -- Andreas Tille Sun, 13 Sep 2009 17:34:07 +0200 exonerate (2.2.0-1) unstable; urgency=low * New upstream release (LP: #285237). This version includes fixes for problems with excessive memory consumption when compiled against glib-2, and fixes a bug with using exonerate-server with unmasked sequences. -- Charles Plessy Mon, 20 Oct 2008 14:18:36 +0200 exonerate (2.1.0-1) unstable; urgency=low * New upstream release (LP: #254115). - This version includes many optimisations and bug fixes for the exonerate-server. It is now possible to search a whole human-sized genome with a typical cDNA or protein query in under a second. - Exonerate-server uses use pthreads by default. * debian/control, debian/compat: switched to debhelper 7. * debian/control: - Checked conformance with Policy 3.8.0. - Enhances: bioperl. * debian/rules: - `--enable-glib2' removed as now default. - Activated tests after build. * Updated debian/copyright. -- Charles Plessy Mon, 04 Aug 2008 19:13:05 +0900 exonerate (2.0.0-1) unstable; urgency=low [ David Paleino ] * Updated to Standards-Version 3.8.0 (no changes needed) [ Charles Plessy ] * New upstream release (Closes: #479323) Quoting the upstream changelog: o Modified exonerate to work in Client:Server mode o Fixed --refine to work with SDP alignments o Disabled codegen warnings from bootstrapper during compilation o Added --geneticcode option for using alternative genetic codes o Added --splice5 and --splice3 to allow alternative splice site PSSMs o Fixed several bugs when scanning query sequences (eg. --forcescan query) o Fixed to report query on forward strand whenever possible. o Fixed --ryo sequence dumping with --bestn o Fixed a bug with missing seeds when using --annotation o Changed license to GPLv3 o Added protein2dna:bestfit and protein2genome:bestfit models (works with exhaustive alignment only) * Updated my email address. * debian/control: - Building on glib-2.0 instead of 1.2. - Added a build dependency on libreadline5-dev. - Augmented the long description and changed the short. - Added a build dependency on CDBS. * debian/copyright made machine-readable. * debian/rules switched to cdbs. * debian/dirs: removed. -- Charles Plessy Wed, 02 Jul 2008 11:24:48 +0900 exonerate (1.4.0-1) unstable; urgency=low * Initial release (Closes: #431404). -- Steffen Moeller Mon, 02 Jul 2007 11:42:38 +0200