fastqc (0.11.9+dfsg-4) unstable; urgency=medium * Provide run-unit-test as user example * Package libsis-jhdf5-java is back so drop the patch avoiding it -- Andreas Tille Thu, 07 May 2020 09:54:37 +0200 fastqc (0.11.9+dfsg-3) unstable; urgency=medium [ tony mancill ] * Team upload. * Update autopkgtests to compare summary output (Closes: #950311) [ Andreas Tille ] * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Repository, Repository-Browse. -- tony mancill Mon, 06 Apr 2020 15:26:31 -0700 fastqc (0.11.9+dfsg-2) unstable; urgency=medium * Fix and enhance autopkgtest * Standards-Version: 4.5.0 (routine-update) * Use secure URI in Homepage field. * Set field Upstream-Contact in debian/copyright. * Set upstream metadata fields: Bug-Database, Bug-Submit. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). -- Andreas Tille Fri, 31 Jan 2020 11:24:32 +0100 fastqc (0.11.9+dfsg-1) unstable; urgency=medium * New upstream version * debhelper-compat 12 (routine-update) * Standards-Version: 4.4.1 (routine-update) * Updated patches. -- Steffen Moeller Sun, 12 Jan 2020 22:40:39 +0100 fastqc (0.11.8+dfsg-2) unstable; urgency=medium * Team upload. [ Jelmer Vernooij ] * Trim trailing whitespace. * Use secure copyright file specification URI. [ Michael R. Crusoe ] * debian/fastqc.desktop: Update path to the icon. [ Dylan Aïssi ] * Update d/patches/htsjdk-api.patch to fix processing of SAM/BAM files (Closes: #897109). Thanks to Chris Norman. -- Dylan Aïssi Tue, 21 May 2019 22:20:32 +0200 fastqc (0.11.8+dfsg-1) unstable; urgency=medium * New upstream release. * Standards-Version: 4.2.1 -- Steffen Moeller Wed, 17 Oct 2018 19:25:09 +0200 fastqc (0.11.7+dfsg-1) unstable; urgency=medium [ Steffen Moeller ] * debian/upstream/metadata: Added references to OMICtools, SciCrunch, bio.tools registries [ Andreas Tille ] * New upstream version * Standards-Version: 4.1.4 * Point Vcs-fields to Salsa * debhelper 11 * Depends: libfindbin-libs-perl Closes: #896931 * Drop alternative Depends: java7-runtime * Set Java 9 as build target -- Andreas Tille Fri, 27 Apr 2018 08:31:31 +0200 fastqc (0.11.5+dfsg-6) unstable; urgency=medium * Team upload. * Avoid use of SAMFileReader to fix FTBFS. Closes: #846708 * Add autopkgtest cases and accompanying test data for SAM/BAM input files. * Make sure jar dependencies are found. Before fixing this, htsjdk classes were not found at runtime. This problem only surfaced with BAM/SAM inputs, which were not tested so far. -- Sascha Steinbiss Thu, 08 Dec 2016 15:40:00 +0000 fastqc (0.11.5+dfsg-5) unstable; urgency=medium [ Gilles Filippini ] * New patch drop-fast5.patch to temporarily drop support for fast5 file format. This way we can drop the build-dependency on libsis-jhdf5-java which doesn't support HDF5 1.10 yet (#842815). fast5 files can easily be converted to fastq using poretools. Closes: #844760 [ Andreas Tille ] * debhelper 10 * d/watch: version=4 -- Andreas Tille Tue, 22 Nov 2016 14:43:31 +0100 fastqc (0.11.5+dfsg-4) unstable; urgency=low * Team upload. * Fix autopkgtest: add depend to unzip. * Install upstream changelog using dh_installchangelogs. -- Dylan Aïssi Thu, 01 Sep 2016 23:05:15 +0200 fastqc (0.11.5+dfsg-3) unstable; urgency=medium * Team upload. [ Canberk Koç ] * Autopkgtest added [ Andreas Tille ] * cme fix dpkg-control -- Canberk Koç Thu, 28 Jul 2016 02:04:17 +0300 fastqc (0.11.5+dfsg-2) unstable; urgency=medium * Reintroduced omitted Configuration directory -- Steffen Moeller Wed, 06 Apr 2016 03:14:58 +0200 fastqc (0.11.5+dfsg-1) unstable; urgency=medium [ Steffen Moeller ] * Contribued EDAM ontology description to debian/upstream/edam [ Andreas Tille ] * New upstream version * Add compression method to watch file * cme fix dpkg-control -- Andreas Tille Sun, 20 Mar 2016 14:30:17 +0100 fastqc (0.11.4+dfsg-3) unstable; urgency=medium * Build-Depends: libhtsjdk-java | libsam-java and try to enable htsjdk.jar in Build system -- Andreas Tille Thu, 14 Jan 2016 13:50:56 +0100 fastqc (0.11.4+dfsg-2) unstable; urgency=medium * Add explicit Depends: default-jre | java7-runtime Closes: #784057 -- Andreas Tille Sun, 20 Dec 2015 20:01:08 +0100 fastqc (0.11.4+dfsg-1) unstable; urgency=medium * New upstream version * cme fix dpkg-control * deban/watch: fix version mangling * New Build-Depends: ant, libsis-hdf5-java * DEP5 issue solved by proper sequence of paragraphs * replace debian/menu by debian/fastqc.desktop -- Andreas Tille Sun, 06 Dec 2015 20:03:09 +0100 fastqc (0.11.2+dfsg-3) unstable; urgency=medium * d/control: Adapt Vcs-Fields to new location * d/rules: xz compression for repackaged upstream source * d/watch: uversionmangle instead of dversionmangle to get correct upstream tarball name * d/README.source: removed since outdated * d/manifest: Add /usr/share/java/commons-math3.jar (thanks for the patch to Danya Alexeyevsky ) Closes: #759543 -- Andreas Tille Thu, 28 Aug 2014 13:34:32 +0200 fastqc (0.11.2+dfsg-2) unstable; urgency=medium * Fix Configuration dir loading (Closes: #756296). Files are in directroy /etc/fastqc/Configuration -- Olivier Sallou Tue, 19 Aug 2014 09:06:07 +0200 fastqc (0.11.2+dfsg-1) unstable; urgency=medium * New upstream release -- Olivier Sallou Mon, 09 Jun 2014 10:41:06 +0200 fastqc (0.10.1+dfsg-2) unstable; urgency=low * Add patch to fix Templates and Contaminants loading in non interactive mode (Closes: #697604) -- Olivier Sallou Wed, 05 Jun 2013 17:08:44 +0200 fastqc (0.10.1+dfsg-1) unstable; urgency=low * Initial release (Closes: #670353) -- Andreas Tille Tue, 20 Nov 2012 13:38:32 +0100