hhsuite (3.3.0+ds-8) unstable; urgency=medium
* Team upload.
* gcc-13.patch: new: fix ftbfs with gcc 13. (Closes: #1037689)
* d/control: declare compliance to standards version 4.6.2.
-- Étienne Mollier <emollier@debian.org> Sun, 13 Aug 2023 10:47:11 +0200
hhsuite (3.3.0+ds-7) unstable; urgency=medium
* Fix watchfile.
* Bump Standards-Version.
* Update date in d/copyright.
-- Sascha Steinbiss <satta@debian.org> Tue, 25 Oct 2022 15:17:24 +0200
hhsuite (3.3.0+ds-6) unstable; urgency=medium
* Adjust patch to not overwrite example files in tests.
This caused a modified file containing the build time to be packaged,
leaving the package unreproducible (and is likely not intended here)
-- Sascha Steinbiss <satta@debian.org> Mon, 22 Nov 2021 22:27:31 +0100
hhsuite (3.3.0+ds-5) unstable; urgency=medium
* Fix watchfile to detect new versions on github
* Standards-Version: 4.6.0 (routine-update)
* Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine-
update)
* Remove trailing whitespace in debian/copyright (routine-update)
-- Andreas Tille <tille@debian.org> Wed, 13 Oct 2021 14:36:58 +0200
hhsuite (3.3.0+ds-4) unstable; urgency=medium
* Team upload.
* Fix tests on non-x86.
* Include Built-Using: ${simde:Built-Using} to satisfy GPL requirements
-- Michael R. Crusoe <crusoe@debian.org> Wed, 02 Sep 2020 15:39:19 +0200
hhsuite (3.3.0+ds-3) unstable; urgency=medium
* Team upload.
* Drop unused add_Makefile_in_data.patch
* Apply patch from upstream to enable full testing without MPI
* Ship the ffindex binaries from the hhsuite fork and Conflict with the
ffindex package.
* Replace disable-AVX-SSE.patch with NATIVE_ARCH=0
* Build-depend on libsimde-dev 0.6.0-2 to get i386 related patches
-- Michael R. Crusoe <crusoe@debian.org> Wed, 02 Sep 2020 13:18:00 +0200
hhsuite (3.3.0+ds-2) unstable; urgency=medium
* Team upload.
* Fix non-x86 builds
-- Michael R. Crusoe <crusoe@debian.org> Tue, 01 Sep 2020 11:37:48 +0200
hhsuite (3.3.0+ds-1) unstable; urgency=medium
* New upstream version
* debhelper-compat 13 (routine-update)
* Refresh patches
* Include the a3m_* utilities
* Exclude lib/simde and use libsimde-dev instead
* Add missing GPL-2 text to debian/copyright
* On i386 & amd64: build one binary for each SIMD level; add dispatching
script
* Upstream has hard forked ffindex, so use their copy
* Removed two old, unused patches
-- Michael R. Crusoe <crusoe@debian.org> Mon, 31 Aug 2020 15:18:43 +0200
hhsuite (3.2.0-3) unstable; urgency=medium
[ Steffen Möller ]
* Added ref to conda
[ Frédéric Bonnard ]
* Enable ppc64el
[ Andreas Tille ]
* Standards-Version: 4.5.0 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* Remove obsolete fields Contact, Name from debian/upstream/metadata
(already present in machine-readable debian/copyright).
-- Andreas Tille <tille@debian.org> Tue, 17 Mar 2020 09:50:48 +0100
hhsuite (3.2.0-2) unstable; urgency=medium
[ Santiago Vila ]
* Fix FTBFS when built with dpkg-buildpackage -A
Closes: #932912
[ Andreas Tille ]
* debhelper-compat 12
* Standards-Version: 4.4.0
* Fix autopkgtest
-- Andreas Tille <tille@debian.org> Thu, 25 Jul 2019 03:06:04 +0200
hhsuite (3.2.0-1) unstable; urgency=medium
[ Michael R. Crusoe ]
* Team upload.
* New upstream release.
"Added hhsearch_omp, hhsearch_mpi, hhalign_omp and haling_mpi binaries
Removed non-GPLv3 compatible code
ffindex_apply_mpi will not crash anymore on systems with low amount of
virtual memory"
* The non-GPLv3 code was in src/hhprefilter.cpp; now gone
* Mark hhsuite-data as Multi-Arch: foreign
* Drop hhsuite-doc: documentation moved by upstream to
https://github.com/soedinglab/hh-suite/wiki
* Removed '-march=native'
[ Andrius Merkys ]
* Revoking executable permission from Perl modules.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Tue, 23 Jul 2019 12:06:51 +0200
hhsuite (3.0~beta3+dfsg-3) unstable; urgency=high
* Team upload
[ Andreas Tille ]
* Build against ffindex (>= 0.9.9.8)
[ Michael R. Crusoe ]
* Don't build with -march=native
-- Michael R. Crusoe <michael.crusoe@gmail.com> Fri, 15 Feb 2019 10:06:44 -0800
hhsuite (3.0~beta3+dfsg-2) unstable; urgency=medium
* Install context_data.crf (Thanks for the patch to Andrius Merkys
<andrius.merkys@gmail.com>)
Closes: #918765
* Add autopkgtest reproducing the issue of bug #918765
* debhelper 11
* Standards-Version: 4.3.0
* Secure URI in copyright format
* Remove trailing whitespace in debian/copyright
* Do not parse d/changelog
* Add versioned (Build-)Depends: ffindex
(>= 0.9.9.7.soedinglab+git20171201.74550c8)
* Adapt doc-base file to debhelper 11 location
-- Andreas Tille <tille@debian.org> Wed, 09 Jan 2019 17:36:27 +0100
hhsuite (3.0~beta3+dfsg-1) unstable; urgency=medium
[ Steffen Moeller ]
* New upstream version.
* debian/upstream/metadata:
- yamllint cleanliness
- Added references to registries
* d/control
- compliance with policy 4.2
- adapted Vcs URLs to salsa.d.o
* Caveat: Does not compile with openmpi libraries discovered.
See README.source.
[ Andreas Tille ]
* Fix Vcs-Browser
* Do not parse d/changelog to obtain version
-- Andreas Tille <tille@debian.org> Tue, 21 Aug 2018 21:09:09 +0200
hhsuite (3.0~beta2+dfsg-3) unstable; urgency=medium
* Specify correct format in printf statement (Thanks for the patch to
Daniel Shahaf <danielsh@apache.org>)
Closes: #851764
-- Andreas Tille <tille@debian.org> Wed, 18 Jan 2017 16:52:21 +0100
hhsuite (3.0~beta2+dfsg-2) unstable; urgency=medium
* Really fix watch file to fetch latest version
* debhelper 10
* simplify d/rules to make it more readable
* drop -dbg file
-- Andreas Tille <tille@debian.org> Wed, 18 Jan 2017 12:06:40 +0100
hhsuite (3.0~beta2+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* Fixed watch file
[ Sascha Steinbiss ]
* New upstream release.
Closes: #846487
* Massive rework of packaging due to new upstream code and build system.
* Migrate to git.
-- Sascha Steinbiss <satta@debian.org> Sat, 14 Jan 2017 15:23:25 +0000
hhsuite (2.0.16-7) unstable; urgency=medium
* Use system defined log2 and log10 to enable build using gcc-6.1
Closes: #831115
* cme fix dpkg-control
* fix spelling
* hardening=+all
-- Andreas Tille <tille@debian.org> Sat, 13 Aug 2016 07:49:16 +0200
hhsuite (2.0.16-6) unstable; urgency=medium
* Versioned Build-Depends ffindex0-dev (>= 0.9.9.6-2)
Closes: #802076
-- Andreas Tille <tille@debian.org> Sun, 18 Oct 2015 07:53:08 +0200
hhsuite (2.0.16-5) unstable; urgency=medium
* Add Replaces: hhsuite which was missing as well
-- Andreas Tille <tille@debian.org> Fri, 07 Nov 2014 07:08:34 +0100
hhsuite (2.0.16-4) unstable; urgency=medium
* Add missing Breaks statement for hhsuite-doc
Closes: #768114
-- Andreas Tille <tille@debian.org> Wed, 05 Nov 2014 07:21:05 +0100
hhsuite (2.0.16-3) unstable; urgency=medium
* hhsuite Breaks hhsuite-data (<= 2.0.16-1)
Closes: #765066
* Priority: optional
* Debhelper 9
* cme fix dpkg-control
* DEP5 fix
* *-doc and *-data package are Architecture: all
-- Andreas Tille <tille@debian.org> Mon, 13 Oct 2014 14:44:05 +0200
hhsuite (2.0.16-2) unstable; urgency=low
[Steffen Moeller]
* Bumped standard to 3.9.4.
* Removed DMUA flag.
* Created new -doc package and moved user guide to it
* Moved scripts directory from hhsuite-data to hhsuite
* Added CHANGES file to .docs
* joined hardening patch with rest1
[Laszlo Kajan]
* Bumped standard to 3.9.5.
* Pulled 2.0.16-1 -> 2.0.16-1u1 changes from Ubuntu: arch all packages are
now amd64, since all arch dep packages are also amd64.
* Completed Steffen's changes.
* Removed libpng12-dev dependency by disabling png feature. (Closes: #742579)
-- Laszlo Kajan <lkajan@debian.org> Mon, 08 Sep 2014 19:32:43 +0200
hhsuite (2.0.16-1) unstable; urgency=low
[Laszlo Kajan]
* New upstream release.
* Updated debian/watch file.
-- Laszlo Kajan <lkajan@rostlab.org> Mon, 24 Sep 2012 09:32:14 +0200
hhsuite (2.0.15-1) unstable; urgency=low
* New upstream release.
-- Laszlo Kajan <lkajan@rostlab.org> Wed, 27 Jun 2012 14:17:05 +0200
hhsuite (2.0.14-1) unstable; urgency=low
* [Andreas Tille <tille@debian.org>]
debian/upstream: Enhanced author values
* [Laszlo Kajan <lkajan@rostlab.org>]
New upstream release.
-- Laszlo Kajan <lkajan@rostlab.org> Wed, 23 May 2012 10:52:40 +0200
hhsuite (2.0.13-2) unstable; urgency=low
* [Andreas Tille <tille@debian.org>]
debian/upstream:
- it is (now) possible to support more than one citation
- more verbose citation information
* [Laszlo Kajan <lkajan@rostlab.org]
Added #include <unistd.h> to src/hhsearch.C in order to fix compilation
issue with g++-4.7. (Closes: #667201)
-- Laszlo Kajan <lkajan@rostlab.org> Wed, 04 Apr 2012 13:45:49 +0200
hhsuite (2.0.13-1) unstable; urgency=low
* New upstream release
-- Laszlo Kajan <lkajan@rostlab.org> Wed, 07 Mar 2012 09:35:48 +0100
hhsuite (2.0.12-1) unstable; urgency=low
* Initial release (Closes: #656626)
-- Laszlo Kajan <lkajan@rostlab.org> Wed, 22 Feb 2012 10:03:00 +0100