hmmer (3.4+dfsg-2) unstable; urgency=medium * Team upload. * d/control: hmmer-examples contains arch-specific test programs, mark as "Architecture: any". -- Michael R. Crusoe Fri, 15 Sep 2023 10:08:46 +0200 hmmer (3.4+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) * Set upstream metadata fields: Bug-Submit. * refresh patches * d/control: enable building on arm64. * d/tests/control: tests needs python3 -- Michael R. Crusoe Thu, 14 Sep 2023 18:33:29 +0200 hmmer (3.3.2+dfsg-1) unstable; urgency=medium * Team upload. * debian/watch: fix version matching * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * debian/control: mark the '-doc' package as Multi-Arch: foreign * Refresh the patches. * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * debian/upstream/metadata: document their GitHub repo -- Michael R. Crusoe Thu, 31 Dec 2020 11:50:25 +0100 hmmer (3.3+dfsg2-1) unstable; urgency=medium * Team upload. * Restore config.guess and config.sub so that dh_update_autotools_config can update them. This fixes the FTBFS. * Added python3 build-dep so that the checks run (and the build doesn't fail) * debian/patches/spelling: fix a typo * debian/patches/hardenng: finished CPPFLAGS propogation -- Michael R. Crusoe Wed, 04 Dec 2019 11:26:08 +0100 hmmer (3.3+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version -- Steffen Moeller Fri, 22 Nov 2019 19:14:46 +0100 hmmer (3.2.1+dfsg-3) unstable; urgency=medium [ Michael R. Crusoe ] * Team upload. * HMMER3 has long required SSE or Altivec/VMX instruction support and the 3.2.1 release enforces this, so we will follow upstreams lead: debian/control: Architecture: any-amd64 any-i386 powerpc ppc64 x32 * debhelper-compat 12 * Enable a verbose build log * Fixed the buildsystem to show commands executed and to build in parallel * Using the above, fixed the buildsystem to enable hardening * Fixed some spelling errors; thanks lintian! * Made autopkgtests more verbose Closes: #941805 [ Andreas Tille ] * Standards-Version: 4.4.1 * Set upstream metadata fields: Bug-Submit. * Remove obsolete fields Name, Contact from debian/upstream/metadata. * DEP3 for skip check for threads -- Michael R. Crusoe Tue, 08 Oct 2019 10:53:29 +0200 hmmer (3.2.1+dfsg-2) unstable; urgency=medium [ Jelmer Vernooij ] * Trim trailing whitespace. [ Hervé Ménager ] * correct HMMER ref [ Andrius Merkys ] * Detecting failed autopkgtest. [ Dylan Aïssi ] * Re-enable builds for any architectures because upstream has fixed the build system to check requirements before to try to build. Unsupported architectures will fail gracefully with an explicite message. [ Steffen Moeller ] * Cleaning autogenerated Makefiles * Added ref to conda * Standards-Version: 4.4.0 * Introducing Link-Time-Optimization -- Andrius Merkys Wed, 13 Mar 2019 11:06:20 -0400 hmmer (3.2.1+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * Fix watch file * New upstream version * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.0 * Adapt doc-base control file to new location of doc * d/rules: - Respect DEB_BUILD_OPTIONS in override_dh_auto_test - Do not parse d/changelog - Fix permission of manpage [ Dylan Aïssi ] * Fix OMICtools ID and replace RRID by SciCrunch -- Andreas Tille Fri, 24 Aug 2018 08:48:36 +0200 hmmer (3.1b2+dfsg-5) unstable; urgency=medium * New homepage * Fix watch file * debhelper 10 -- Andreas Tille Fri, 20 Jan 2017 15:35:12 +0100 hmmer (3.1b2+dfsg-3) unstable; urgency=medium * Team upload. * Make build reproducible. - Ensure deletion of temporary files named by PID in all example directories. - Remove build directory from CFLAGS in installed Makefiles. -- Sascha Steinbiss Sat, 27 Aug 2016 09:47:45 +0000 hmmer (3.1b2+dfsg-2) unstable; urgency=medium * Reproducible build (thanks for the patch to Chris Lamb) Closes: #830286 -- Andreas Tille Thu, 07 Jul 2016 23:16:42 +0200 hmmer (3.1b2+dfsg-1) unstable; urgency=medium * Team upload. [ Afif Elghraoui ] * Set VCS URLs to point to git repository * Bump Standards-Version to 3.9.8 [ Canberk Koç ] * Autopkgtests added * debian/rules: - examples added * License issue solved [ Andreas Tille ] * Clean up Uploaders from inactive maintainers * Better hardening * Remove useless .dropbox.attr files from package * Create a separate examples package * Seems old perl4 scripts are used in examples - add according dependencies * Fix permissions * Drop libdivsufsort in favour of using the Debian packaged version -- Canberk Koç Sun, 3 Jul 2016 01:04:33 +0300 hmmer (3.1b2-2) unstable; urgency=medium * debian/control: Fix contact address * restrict architectures to Intel architectures Closes: #806675 -- Andreas Tille Wed, 02 Dec 2015 08:21:42 +0100 hmmer (3.1b2-1) unstable; urgency=medium * New upstream version (adapted patches) * Moved debian/upstream to debian/upstream/metadata * cme fix dpkg-control -- Andreas Tille Sun, 05 Jul 2015 22:45:41 +0200 hmmer (3.1b1-3) unstable; urgency=low * Apply patch from Adam Conrad to build on powerpc (thanks to Adam for the patch) Closes: #728650 * DEP3 patch headers * cme fix dpkg-control -- Andreas Tille Mon, 02 Dec 2013 17:24:47 +0100 hmmer (3.1b1-2) unstable; urgency=low [ Charles Plessy ] * Removed myself from the Uploaders. [ Andreas Tille ] * debian/rules: Use --with autotools_dev Closes: #727386 -- Andreas Tille Thu, 24 Oct 2013 08:37:52 +0200 hmmer (3.1b1-1) unstable; urgency=low * Upload changes from BioLinux to Debian * debian/control: - cme fix dpkg-control - provide real package (evince) for pdf-viewer - debhelper 9 - anonscm for Vcs fields -- Andreas Tille Thu, 15 Aug 2013 20:20:03 +0200 hmmer (3.1b1-0biolinux1) precise; urgency=low * New upstream * Switch to DH in rules as CDBS does my nut in * Simplify hmmer.install and kill hmmer.manpages * Added binaries: alimask hmmc2 hmmlogo hmmpgmd nhmmer nhmmscan * Modify watchfile to see new version * Avoid compressing all the tutorial data * make distclean was failing :- fixed with patch -- Tim Booth Thu, 15 Aug 2013 16:34:31 +0100 hmmer (3.0-4) unstable; urgency=low [ Charles Plessy ] * renamed debian/upstream-metadata.yaml to debian/upstream [ Andreas Tille ] * debian/upstream: Took over additional citation from tasks file * debian/control: - Standards-Version: 3.9.3 (no changes needed) - Fixed Vcs fields * debhelper 8 (control + compat) * debian/docs: removed because empty * debian/copyright: - Rewritten to match DEP5 (verified using `cme fix dpkg-copyright`) - Added Files: easel:* section * debian/rules: Fixed clean target by cleaning up easel/testsuite dir -- Andreas Tille Tue, 03 Apr 2012 09:53:16 +0200 hmmer (3.0-3) unstable; urgency=low * Fix "FTBFS (powerpc): altivec and cast errors": remove special casing for powerpc, so that it gets built with the dummy vector implementation like most other architectures - contributed by Gregor Herrrmann (Closes: #594860). -- Steffen Moeller Mon, 25 Oct 2010 00:08:19 +0200 hmmer (3.0-2) unstable; urgency=low * Install binaries to /usr/bin instead of /bin * Standards-Version: 3.9.1 (no changes needed) -- Andreas Tille Fri, 27 Aug 2010 07:53:17 +0200 hmmer (3.0-1) unstable; urgency=low * The 3.0 release should now substitute the outdated 2.3.x one. * The hmmer-pvm package is no longer available. -- Eric Talevich Thu, 08 Jul 2010 14:17:59 -0400 hmmer (2.3.2-6) UNRELEASED; urgency=low * Enabled upstream checks in debian/rules. * Documented how the package is tested in debian/README.Debian * Switched Debhelper to mode 7 (debian/compat, debian/control). * Gathered some metadata about upstream in debian/upstream-metadata.yaml. * Checked conformance with Policy 3.8.3 and incremented Standards-Version in debian/control to reflect it. -- Charles Plessy Wed, 16 Dec 2009 13:21:02 +0900 hmmer (2.3.2-5) unstable; urgency=low * Changed the doc-base section according to the new policy. * debian/control: - Added myself as Uploader. - Increased priority to `optional' - Standards-Version: 3.8.0 (no changes needed) -- Charles Plessy Sun, 06 Jul 2008 23:49:23 +0900 hmmer (2.3.2-4) unstable; urgency=low * Moved Homepage tag from long description to tags * Removed XB-Tag because it is actually not used by debtags * Added myself as Uploader * Standards-Version: 3.7.3 (no changes needed) * Added Vcs-Browser, Vcs-Svn * DM-Upload-Allowed: yes -- Andreas Tille Tue, 26 Feb 2008 20:40:17 +0100 hmmer (2.3.2-3) unstable; urgency=low * Updated hmmer homepage (Closes: #435396). Thanks to Charles Plessy; * Updated watch file; * Moved Matthew Vernon to Uploaders and set Maintainer to Debian-Med Packaging Team ; * Downgraded biosquid to recommends. -- Nelson A. de Oliveira Tue, 31 Jul 2007 15:15:23 -0300 hmmer (2.3.2-2) unstable; urgency=medium * Changed my email address; * Changing priority to extra, instead optional (hmmer has a dependency on pvm and libpmv3 -- Policy 2.5); * Added tags on debian/control; * Medium urgency to get the package with the correct priority on Etch. -- Nelson A. de Oliveira Wed, 6 Dec 2006 16:27:06 -0200 hmmer (2.3.2-1) unstable; urgency=low * New upstream version (Closes: #261293); * Documentation is split in a new package (Closes: #233374, #175481); * "getseq" is not shipped anymore with hmmer, since it was renamed to "sfetch" (Closes: #197658); * New package hmmer-pvm, with PVM enabled binaries; * The package is again non-Debian native; * Using CDBS; * Using debhelper compatibility level 5; * Updated Standards-Version to 3.7.2; * Added doc-base and watch file; * Updated copyright file; * Added me as co-maintainer. From Matthew Vernon: "If you're keen to take hmmer, take it; I'm writing up my thesis at the moment, so my time for Debian is somewhat limited; I took on hmmer because it was orphaned at the time, and I wanted it to stay in the distribution." -- Nelson A. de Oliveira Tue, 15 Aug 2006 17:30:32 -0300 hmmer (2.1.4) unstable; urgency=low * Change section to science -- Matthew Vernon Tue, 10 Apr 2001 02:51:17 +0100 hmmer (2.1.3) unstable; urgency=low * Move from /usr/man to /usr/share/man (closes: #91171) * Move from /usr/doc to /usr/share/doc (closes: #91494) -- Matthew Vernon Mon, 09 Apr 2001 16:12:21 +0100 hmmer (2.1.2) unstable; urgency=low * New maintainer -- Matthew Vernon Tue, 07 Dec 1999 16:30:35 +0000 hmmer (2.1.1-1) unstable; urgency=low * New upstream version. -- John Lapeyre Tue, 30 Mar 1999 16:50:05 -0700 hmmer (2.0-1) unstable; urgency=low * Initial Release. -- John Lapeyre Thu, 13 Aug 1998 21:48:53 -0700