hmmer2 (2.3.2+dfsg-12) unstable; urgency=medium * Drop -fcf-protection=full option in autoplgtest which works on amd64+i386 only and makes the test fail on other architectures * Drop emeritus Laszlo Kajan from Uploaders (thanks for all your work Laszlo) * Standards-Version: 4.7.0 (routine-update) * Use secure URI in Homepage field. * Remove patch hardening.patch that is missing from debian/patches/series. * DEP3 + Forwarded: No -- Andreas Tille Thu, 11 Apr 2024 09:59:24 +0200 hmmer2 (2.3.2+dfsg-11) unstable; urgency=medium * Team Upload. * Fixup regression in autopkgtests introduced w/ previous upload. -- Nilesh Patra Mon, 25 Mar 2024 18:17:17 +0530 hmmer2 (2.3.2+dfsg-10) unstable; urgency=medium * Team Upload. * Update PKG_CONFIG macro in configure.ac and avoid hard-coding the same to get package cross-building * Since tests are compiled during build time, cleanup before running dh_installexamples * Fixup wrong paths in .pc file -- Nilesh Patra Mon, 25 Mar 2024 17:34:19 +0530 hmmer2 (2.3.2+dfsg-9) unstable; urgency=medium * Team Upload. * Add patch to fix FTBFS due to implicit-function-decl * Pass GNU Test macro to resolve implicit function warning with pthread. (Closes: #1066436) * Also run dh_clean in addition to overridden ops * Change exercises.sqc post installation - do not change files in source root (Closes: #1046065, #1049476) * Move from pkg-config => pkgconf -- Nilesh Patra Mon, 25 Mar 2024 16:09:47 +0530 hmmer2 (2.3.2+dfsg-8) unstable; urgency=medium * Provide configure.ac as source for configure Closes: #1025739 * Fix watchfile to detect new versions on github * Standards-Version: 4.6.1 (routine-update) -- Andreas Tille Sun, 11 Dec 2022 16:58:23 +0100 hmmer2 (2.3.2+dfsg-7) unstable; urgency=medium * Drop hmmer2-pvm package * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Repository, Repository-Browse. * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Use NOTES as upstream changelog and install 00README * Cleanup after running build time test -- Andreas Tille Wed, 12 Aug 2020 11:44:30 +0200 hmmer2 (2.3.2+dfsg-6) unstable; urgency=medium * Update watch file * Update d/copyright * Stick to debhelper 10 (in compat level 11 dh_auto_configure passes --runstatedir=/run to ./configure. This causes FTBFS.) * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 -- Andreas Tille Mon, 24 Sep 2018 11:34:02 +0200 hmmer2 (2.3.2+dfsg-5) unstable; urgency=medium [ Steffen Moeller ] * debian/upstream/metadata: Added refs to OMICtoos, bio.tools, RRID [ Andreas Tille ] * Build-Depends: rename Closes: #874042 * Standards-Version: 4.1.0 (no chaanges needed) * Drop autotools-dev -- Andreas Tille Sun, 03 Sep 2017 21:50:24 +0200 hmmer2 (2.3.2+dfsg-4) unstable; urgency=medium * Team upload. * Use -ffloat-store on i386 to fix FTBFS. Thanks to Aaron M. Ucko for the hint. Closes: #865099 -- Sascha Steinbiss Tue, 04 Jul 2017 23:08:03 +0200 hmmer2 (2.3.2+dfsg-3) unstable; urgency=medium * Upload to unstable -- Andreas Tille Mon, 19 Jun 2017 09:33:45 +0200 hmmer2 (2.3.2+dfsg-2) experimental; urgency=medium * Build libhmmer.a using -fPIC to enable linking with other programs like psortb -- Andreas Tille Wed, 19 Apr 2017 09:11:29 +0200 hmmer2 (2.3.2+dfsg-1) experimental; urgency=medium * Link against libsquid instead of code copy * d/rules: drop unneeded get-orig-source target * debhelper 10 * Remove SWISS-PROT copyrighted files in tutorial -- Andreas Tille Thu, 13 Apr 2017 08:57:30 +0200 hmmer2 (2.3.2-13) unstable; urgency=medium * Fixed watch file * Provide links to original names of tools that have vanished in hmmer3 This is used by bioperl-run * Fix spelling in manpage -- Andreas Tille Tue, 17 Jan 2017 17:19:44 +0100 hmmer2 (2.3.2-12) unstable; urgency=medium * Team upload. * Make build reproducible. - Remove build directory from installed Makefile. -- Sascha Steinbiss Fri, 09 Sep 2016 19:58:20 +0000 hmmer2 (2.3.2-11) unstable; urgency=medium * Team upload. * Add missing dependency to autopkgtest. * Make build reproducible. Thanks to Chris Lamb for the patch. Closes: #828065 -- Sascha Steinbiss Fri, 24 Jun 2016 15:22:40 +0000 hmmer2 (2.3.2-10) unstable; urgency=medium * Team upload. [ Canberk Koç ] * autopkgtests added * debian/rules: - added example files [ Afif Elghraoui ] * Set VCS URLs to point to git repository * Bump Standards-Version to 3.9.8 [ Andreas Tille ] * Clean up Uploaders from inactive maintainers * Better hardening -- Canberk Koç Thu, 16 Jun 2016 22:01:44 +0300 hmmer2 (2.3.2-9) unstable; urgency=medium * debhelper 9 * cme fix dpkg-control * document removed PDF in Files-Excluded instead of README.source * slight DEP5 fix -- Andreas Tille Fri, 08 Jan 2016 13:23:34 +0100 hmmer2 (2.3.2-8) unstable; urgency=medium * Use autotools-dev for arm64. -- Laszlo Kajan Sat, 13 Sep 2014 21:21:54 +0200 hmmer2 (2.3.2-7) unstable; urgency=low * Team upload * debian/control: - Removed myself from the Uploaders. - Removed obsolete DM-Upload-Allowed field. - Use canonical VCS URLs. - Normalised using config-model-edit. - Build-depend on libperl4-corelibs-perl (Closes: #730921). * Conforms with Policy 3.9.5. -- Charles Plessy Sun, 01 Dec 2013 09:26:43 +0900 hmmer2 (2.3.2-6) unstable; urgency=low [Charles Plessy] * Enabled upstream checks in debian/rules. * Documented how the package is tested in debian/README.Debian * Switched Debhelper to mode 7 (debian/compat, debian/control). * Gathered some metadata about upstream in debian/upstream-metadata.yaml. * Checked conformance with Policy 3.8.3 and incremented Standards-Version in debian/control to reflect it. [Laszlo Kajan] * Debhelper 8. * Policy version 3.9.3. * Renaming hmmer version 2 to hmmer2 in order to allow coexistence with hmmer (>=3) in wheezy. * Renaming binaries and man pages: hmmalign => hmm2align hmmbuild => hmm2build hmmcalibrate => hmm2calibrate hmmconvert => hmm2convert hmmemit => hmm2emit hmmfetch => hmm2fetch hmmindex => hmm2index hmmpfam => hmm2pfam hmmsearch => hmm2search hmmcalibrate-pvm => hmm2calibrate-pvm hmmpfam-pvm => hmm2pfam-pvm hmmsearch-pvm => hmm2search-pvm in order to allow coexistence with those from hmmer (>=3). (Closes: #680539) * debian/rules: remove binary without source documentation Userguide.pdf in get-orig-source target -- Laszlo Kajan Mon, 09 Jul 2012 17:46:31 +0200 hmmer (2.3.2-5) unstable; urgency=low * Changed the doc-base section according to the new policy. * debian/control: - Added myself as Uploader. - Increased priority to `optional' - Standards-Version: 3.8.0 (no changes needed) -- Charles Plessy Sun, 06 Jul 2008 23:49:23 +0900 hmmer (2.3.2-4) unstable; urgency=low * Moved Homepage tag from long description to tags * Removed XB-Tag because it is actually not used by debtags * Added myself as Uploader * Standards-Version: 3.7.3 (no changes needed) * Added Vcs-Browser, Vcs-Svn * DM-Upload-Allowed: yes -- Andreas Tille Tue, 26 Feb 2008 20:40:17 +0100 hmmer (2.3.2-3) unstable; urgency=low * Updated hmmer homepage (Closes: #435396). Thanks to Charles Plessy; * Updated watch file; * Moved Matthew Vernon to Uploaders and set Maintainer to Debian-Med Packaging Team ; * Downgraded biosquid to recommends. -- Nelson A. de Oliveira Tue, 31 Jul 2007 15:15:23 -0300 hmmer (2.3.2-2) unstable; urgency=medium * Changed my email address; * Changing priority to extra, instead optional (hmmer has a dependency on pvm and libpmv3 -- Policy 2.5); * Added tags on debian/control; * Medium urgency to get the package with the correct priority on Etch. -- Nelson A. de Oliveira Wed, 6 Dec 2006 16:27:06 -0200 hmmer (2.3.2-1) unstable; urgency=low * New upstream version (Closes: #261293); * Documentation is split in a new package (Closes: #233374, #175481); * "getseq" is not shipped anymore with hmmer, since it was renamed to "sfetch" (Closes: #197658); * New package hmmer-pvm, with PVM enabled binaries; * The package is again non-Debian native; * Using CDBS; * Using debhelper compatibility level 5; * Updated Standards-Version to 3.7.2; * Added doc-base and watch file; * Updated copyright file; * Added me as co-maintainer. From Matthew Vernon: "If you're keen to take hmmer, take it; I'm writing up my thesis at the moment, so my time for Debian is somewhat limited; I took on hmmer because it was orphaned at the time, and I wanted it to stay in the distribution." -- Nelson A. de Oliveira Tue, 15 Aug 2006 17:30:32 -0300 hmmer (2.1.4) unstable; urgency=low * Change section to science -- Matthew Vernon Tue, 10 Apr 2001 02:51:17 +0100 hmmer (2.1.3) unstable; urgency=low * Move from /usr/man to /usr/share/man (closes: #91171) * Move from /usr/doc to /usr/share/doc (closes: #91494) -- Matthew Vernon Mon, 09 Apr 2001 16:12:21 +0100 hmmer (2.1.2) unstable; urgency=low * New maintainer -- Matthew Vernon Tue, 07 Dec 1999 16:30:35 +0000 hmmer (2.1.1-1) unstable; urgency=low * New upstream version. -- John Lapeyre Tue, 30 Mar 1999 16:50:05 -0700 hmmer (2.0-1) unstable; urgency=low * Initial Release. -- John Lapeyre Thu, 13 Aug 1998 21:48:53 -0700