Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Source: https://github.com/samtools/htsjdk/releases Comment: Convenience binary jar files are removed. Files-Excluded: lib/* Files: * Copyright: 2009-2015, The Broad Institute License: MIT Files: src/java/htsjdk/samtools/SAMFlag.java src/tests/java/htsjdk/samtools/SAMFlagTest.java src/tests/java/htsjdk/samtools/SAMSequenceDictionaryTest.java Copyright: 2015 Pierre Lindenbaum License: MIT Files: src/java/htsjdk/tribble/util/popgen/HardyWeinbergCalculation.java Copyright: 2003, Jan Wigginton, Goncalo Abecasis (goncalo@umich.edu) 2004, 2009, The Broad Institute License: MIT Files: src/java/htsjdk/samtools/util/DateParser.java Copyright: 2000 MIT, INRIA and Keio License: W3C-Software Files: etc/test/junit-noframes.xsl Copyright: 2001-2004, The Apache Software Foundation License: Apache-2.0 Files: src/c/inteldeflater/IntelDeflater.c src/java/htsjdk/samtools/util/zip/IntelDeflater.java src/java/htsjdk/samtools/util/zip/ZStreamRef.java Copyright: (c) 1996, 1996, 2009, 2010, Oracle and/or its affiliates. All rights reserved. License: GPL-2 with Classpath exception Files: src/java/htsjdk/samtools/CRAM*.java src/java/htsjdk/samtools/cram/* Copyright: 2013, EMBL-EBI License: Apache-2.0 Files: src/java/htsjdk/samtools/seekablestream/SeekableFileStream.java src/java/htsjdk/samtools/seekablestream/SeekableFTPStream.java src/java/htsjdk/samtools/seekablestream/SeekableFTPStreamHelper.java src/java/htsjdk/samtools/util/ftp/FTPClient.java src/java/htsjdk/samtools/util/ftp/FTPReply.java src/java/htsjdk/samtools/util/ftp/FTPStream.java src/java/htsjdk/samtools/util/ftp/FTPUtils.java src/java/htsjdk/tribble/AbstractFeatureReader.java src/java/htsjdk/tribble/AsciiFeatureCodec.java src/java/htsjdk/tribble/CloseableTribbleIterator.java src/java/htsjdk/tribble/FeatureCodec.java src/java/htsjdk/tribble/FeatureReader.java src/java/htsjdk/tribble/index/AbstractIndex.java src/java/htsjdk/tribble/index/interval/Interval.java src/java/htsjdk/tribble/index/interval/IntervalIndexCreator.java src/java/htsjdk/tribble/index/interval/IntervalTree.java src/java/htsjdk/tribble/index/interval/IntervalTreeIndex.java src/java/htsjdk/tribble/index/linear/LinearIndex.java src/java/htsjdk/tribble/readers/AsciiLineReader.java src/java/htsjdk/tribble/readers/PositionalBufferedStream.java src/java/htsjdk/tribble/util/HTTPHelper.java src/java/htsjdk/tribble/util/URLHelper.java src/tests/java/htsjdk/tribble/index/linear/LinearIndexTest.java src/tests/java/htsjdk/tribble/index/interval/IntervalTreeTest.java Copyright: 2007-2010, The Broad Institute, Inc. and the Massachusetts Institute of Technology 2007-2011, The Broad Institute of MIT and Harvard. 2009-2010, The Broad Institute, Inc License: LGPL-2.1 Files: debian/* Copyright: 2010 Shaun Jackman 2013 Olivier Sallou 2015 Vincent Danjean License: ISC Permission to use, copy, modify, and/or distribute this software for any purpose with or without fee is hereby granted, provided that the above copyright notice and this permission notice appear in all copies. 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