igv (2.18.5+dfsg-1) unstable; urgency=medium * New upstream version 2.18.5+dfsg * Refreshing patches * Raising Standards version to 4.7.0 (no change) * Refreshing the list of files to exclude when repacking * Skipping more tests requiring the network -- Pierre Gruet Sun, 13 Oct 2024 21:58:58 +0200 igv (2.17.3+dfsg-1) unstable; urgency=medium [ Vladimir Petko ] * d/p/skip_tests_network.patch: add tests requiring internet (Closes: #1065646). [ Andreas Tille ] * New upstream version * d/watch: Fix download file name -- Andreas Tille Fri, 08 Mar 2024 18:55:28 +0100 igv (2.17.1+dfsg-1) unstable; urgency=medium * New upstream version 2.17.1+dfsg * Refreshing patches * Build-Depending on junit5 for the vintage part of the tests * Updating Maven rules * Refreshing d/copyright * Raising source/target level for the build * Avoiding sealed interfaces, which cause errors in the build * Dropping tests using unpackaged spark * Omitting tests using removed blat data * Updating Lintian override for file with very long lines -- Pierre Gruet Sat, 17 Feb 2024 19:30:09 +0100 igv (2.16.2+dfsg-2) unstable; urgency=medium * Solving ambiguity to build against htsjdk/4.0.2+dfsg (Closes: #1058683) -- Pierre Gruet Thu, 14 Dec 2023 14:09:05 +0100 igv (2.16.2+dfsg-1) unstable; urgency=medium * New upstream version 2.16.2+dfsg * Fixing the clean target (Closes: #1048443) -- Pierre Gruet Sun, 08 Oct 2023 13:57:54 +0200 igv (2.16.1+dfsg-1) unstable; urgency=medium * New upstream version 2.16.1+dfsg * Refreshing patches * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. -- Pierre Gruet Mon, 26 Jun 2023 12:09:14 +0200 igv (2.16.0+dfsg-1) unstable; urgency=medium * New upstream version 2.16.0+dfsg * Refreshing patches -- Pierre Gruet Wed, 01 Feb 2023 22:47:28 +0100 igv (2.15.4+dfsg-1) unstable; urgency=medium * New upstream version 2.15.4+dfsg * Refreshing patches * Raising Standards version to 4.6.2 (no change) -- Pierre Gruet Fri, 06 Jan 2023 22:39:09 +0100 igv (2.15.2+dfsg-1) unstable; urgency=medium * New upstream version 2.15.2+dfsg * Refreshing patches * Using the static form of URLDecoder.decode to build against OpenJDK17 -- Pierre Gruet Wed, 16 Nov 2022 22:52:56 +0100 igv (2.14.0+dfsg-2) unstable; urgency=medium * Excluding one more test requiring the network, thanks to Gianfranco Costamagna (Closes: #1018751) -- Pierre Gruet Wed, 31 Aug 2022 12:35:12 +0200 igv (2.14.0+dfsg-1) unstable; urgency=medium * New upstream version 2.14.0+dfsg * Refreshing patches * Excluding more tests requiring the network, thanks to Gianfranco Costamagna (Closes: #1018683) * Reworking build dependencies, honouring B-D-Indep * Removing a wrong Override annotation by patching a class file * Adding a Lintian override for very-long-lines in a file -- Pierre Gruet Mon, 29 Aug 2022 17:15:30 +0200 igv (2.13.0+dfsg-1) unstable; urgency=medium * New upstream version 2.13.0+dfsg * Refreshing patches * Setting Standards version to 4.6.1 (no change) * Avoiding the instantiation of URLDecoder as we only call a static method (Closes: #1012071) -- Pierre Gruet Tue, 31 May 2022 22:09:01 +0200 igv (2.12.3+dfsg-1) unstable; urgency=medium * New upstream version 2.12.3+dfsg * Refreshing patches * Removing obsolete dependency on goby * Remove trailing whitespace in debian/copyright (routine-update) -- Pierre Gruet Fri, 06 May 2022 22:09:11 +0200 igv (2.12.0+dfsg-1) unstable; urgency=medium * New upstream version 2.12.0+dfsg * Refreshing patches * Polishing d/copyright * Skipping more tests needing the network -- Pierre Gruet Wed, 09 Feb 2022 17:13:59 +0100 igv (2.11.9+dfsg-1) unstable; urgency=medium * New upstream version 2.11.9+dfsg * Refreshing d/copyright * Refreshing patches * Cleaning d/rules * Adapting a property name to old Debian-packaged gradle * Adding Maven coordinates of jide in build.gradle * Building without the AWS classes, as the AWS SDK is not packaged yet * Adding a debian/README.Debian file to tell about those missing classes * Avoiding running Spark-related things in the tests * Providing additional Maven rules and ignoreRules * Refreshing dependencies * Refreshing the classpath of the built jar * Excluding more tests needing the network * Removing old debian/README.source file * Excluding HTML files with very long lines from the source tarball and deactivating (previously passing) tests that read them -- Pierre Gruet Thu, 23 Dec 2021 16:47:23 +0100 igv (2.6.3+dfsg2-2) unstable; urgency=medium * Source-only upload * Adding a metainfo file for AppStream [ Andreas Tille ] * Fix watch file -- Pierre Gruet Fri, 12 Nov 2021 17:34:33 +0100 igv (2.6.3+dfsg2-1) unstable; urgency=medium * New upstream version 2.6.3+dfsg2 * Switching from non-free to main: - Removing all embedded jar files - Removing the non-free iconset, adding home-made ones * Refreshing patches * Raising Standards version to 4.6.0 (no change) * Updating d/watch for Github new release/tag page * Refreshing d/copyright * Depending on the Debian-packaged libgoby-io-java * Adding jars in the classpath for the tests * Indicating the coordinates of Debian-packaged dependencies and omitting modules * Omitting three tests related to goby as they rely on too old data files * Providing an icon and a desktop entry -- Pierre Gruet Sun, 07 Nov 2021 13:54:10 +0100 igv (2.6.3+dfsg-3) unstable; urgency=medium * Revising the list of dependencies and updating d/igv.manifest accordingly * Refreshing d/copyright * Lightening d/bin/igv as igv.jar has a sufficient classpath -- Pierre Gruet Fri, 13 Nov 2020 20:21:39 +0100 igv (2.6.3+dfsg-2) unstable; urgency=medium * Correcting the module name of junit in build.gradle Closes: #974076 -- Pierre Gruet Wed, 11 Nov 2020 07:12:39 +0100 igv (2.6.3+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * Standards-Version: 4.5.0 (Rules-Requires-Root field added) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Use secure URI in Homepage field. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. [ Pierre Gruet ] * New upstream version Closes: #940606 * Updating build directory to Java 11 * Add runtime dependency to batik * Adapting paths for gradle as we use Debian libs * Adapting the code, written for an old htsjdk version Closes: #968739 * Skipping build-time tests that require an access to network -- Pierre Gruet Tue, 01 Sep 2020 22:14:41 +0200 igv (2.4.17+dfsg-1) unstable; urgency=medium * New upstream version * debhelper 12 * Standards-Version: 4.3.0 -- Andreas Tille Wed, 30 Jan 2019 14:45:04 +0100 igv (2.4.16+dfsg-1) unstable; urgency=medium * New upstream version * Drop Build-Depends: libmysql-java, Recommends: libmariadb-java Closes: #913323 -- Andreas Tille Thu, 06 Dec 2018 09:11:58 +0100 igv (2.4.14+dfsg-2) unstable; urgency=medium [ Olivier Sallou ] fix for FTBS openjdk 11, Closes: #895765 - thanks to Markus Koschany -- Olivier Sallou Tue, 23 Oct 2018 14:55:18 +0200 igv (2.4.14+dfsg-1) unstable; urgency=medium [ Dylan Aïssi ] * Add more libraries deps in classpath (LP: #1400648, #1476650, #1602389) [ Andreas Tille ] * New upstream version * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Upstream switched build system to gradle * Add commons-io.jar and gson.jar to classpath in wrapper script (Thanks for the hint to Tony Travis ) (LP: #1797819) * XS-Autobuild: yes * d/copyright: Maintain Files-Excluded: - jlfgr is now available as source code not binary jar - do not mention files not in tarball any more - remove more unused jars * Add missing Depends [ Olivier Sallou] * d/patches/fix_gradle.patch: adapt build to Debian Remove java module support as some Debian libs are not modularized yet -- Andreas Tille Fri, 19 Oct 2018 10:52:29 +0200 igv (2.4.6+dfsg-1) unstable; urgency=medium [ Steffen Moeller ] * debian/upstream/metadata: - Added references to registries - yamllint cleanliness [ Andreas Tille ] * New upstream version * build.xml: `include name="batik.jar"` (Thanks for the hint to Markus Koschany ) Closes: #877941 * Standards-Version: 4.1.3 * New Build-Depends: openjfx * Drop libconcurrent-java from Build-Depends * debhelper 11 -- Andreas Tille Mon, 22 Jan 2018 09:52:36 +0100 igv (2.3.90+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version. -- Sascha Steinbiss Sat, 14 Jan 2017 08:41:54 +0000 igv (2.3.88+dfsg-1) unstable; urgency=medium * New upstream version Closes: #846474 * d/watch: - version=4 - repack + xz compression * Replace code copies of libmysql-java, gson and libfest * cme fix dpkg-control * debhelper 10 -- Andreas Tille Tue, 13 Dec 2016 12:18:16 +0100 igv (2.3.81+dfsg-1) unstable; urgency=medium * New upstream release 2.3.81+dfsg -- Olivier Sallou Tue, 27 Sep 2016 11:36:47 +0200 igv (2.3.68+dfsg-1) unstable; urgency=medium * New upstream version * Add Build-Depends: libhtsjdk-java (and leave libsam-java for potential backports) Closes: #810842 -- Andreas Tille Thu, 14 Jan 2016 16:39:12 +0100 igv (2.3.64+dfsg-1) unstable; urgency=medium * New upstream version Closes: #804393 * License change to MIT -- Andreas Tille Sun, 08 Nov 2015 08:22:41 +0100 igv (2.3.57+dfsg-1) unstable; urgency=medium * New upstream version * Removed Shaun Jackman from uploaders -- Andreas Tille Fri, 17 Jul 2015 21:59:26 +0200 igv (2.3.38+dfsg-1) unstable; urgency=medium * New upstream version * cme fix dpkg-control -- Andreas Tille Fri, 24 Oct 2014 23:13:16 +0200 igv (2.3.36+dfsg-1) unstable; urgency=medium * New upstream version (refreshed patches) * Adapt watch file to new location (github) * Adapt to new uscan * New Build-Depends: libcommons-io-java * Drop Build-Depends libnb-absolutelayout-java and rather leave the binary lib/AbsoluteLayout.jar in since we have JARs there anyway * d/copyright: Updated regarding changed file names -- Andreas Tille Fri, 15 Aug 2014 11:16:32 +0200 igv (2.3.14+dfsg-2) unstable; urgency=medium * debian/upstream -> debian/upstream/metadata * (Build-)Depends: libcofoja-java Closes: #741052 * cme fix dpkg-control * Add missing default-jdk in Build-Depends and use ${java:Depends} instead of repeating dependencies manually -- Andreas Tille Mon, 17 Mar 2014 20:22:24 +0100 igv (2.3.14+dfsg-1) unstable; urgency=low * New upstream version * debian/copyright: Removed Files: lib/jide* section because it is not shipped any more in source in favour of the Debian packaged version Closes: #722677 * debian/control: - cme fix dpkg-control - debhelper 9 -- Andreas Tille Fri, 13 Sep 2013 14:03:08 +0200 igv (2.3.12+dfsg-1) unstable; urgency=low * New upstream release -- Olivier Sallou Thu, 25 Jul 2013 16:32:45 +0200 igv (2.3.2+dfsg-2) unstable; urgency=low * Move to unstable. -- Olivier Sallou Sun, 02 Jun 2013 11:05:35 +0200 igv (2.3.2+dfsg-1) experimental; urgency=low * New upstream release * Use libjide-oss-java from Debian (Closes: #703721). * Use libcofoja-java from Debian -- Olivier Sallou Wed, 01 May 2013 12:28:03 +0200 igv (2.2.7+dfsg-1) experimental; urgency=low [ Andreas Tille ] * New upstream version * debian/upstream: Add citation information * debian/control: - Enhanced long description - Standards-Version: 3.9.3 (no changes needed) - Enable JDK transition (thanks to James Page for the patch) Closes: #683538 * debian/copyright: - Proper DEP5 Format field - Fixed Source field - Added Files-Excluded to document what files were excluded from upstream * debian/rules: get-orig-source using uscan from Git to exclude Files-excluded automatically -- Olivier Sallou Sat, 23 Feb 2013 22:24:32 +0100 igv (2.0.30-1) unstable; urgency=low * New upstream release. -- Shaun Jackman Thu, 22 Dec 2011 16:59:30 -0800 igv (2.0.6-1) unstable; urgency=low * New upstream release. * debian/control: Depend and Build-Depend on libcommons-logging-java, libhttpclient-java, libhttpcore-java, libjcommon-java and libjfreechart-java. * debian/igv.1: Update. * debian/watch: Update. -- Shaun Jackman Mon, 25 Jul 2011 11:41:18 -0700 igv (1.5.64-1) unstable; urgency=low * Team upload. * New upstream release. * debian/control: - Depend and Build-Depend on libjhdf5-java. - Incremented Standards-Version to reflect conformance with Policy 3.9.2. - Corrected Vcs-Git URL. -- Charles Plessy Thu, 23 Jun 2011 19:57:52 +0900 igv (1.5.60-1) unstable; urgency=low * New upstream release. * Remove libjhdf5-java from the dependencies. -- Shaun Jackman Mon, 21 Mar 2011 16:34:04 -0700 igv (1.5.21-1) unstable; urgency=low * New upstream release. -- Shaun Jackman Fri, 17 Sep 2010 17:18:33 -0700 igv (1.5.18-1) unstable; urgency=low * New upstream release. -- Shaun Jackman Wed, 18 Aug 2010 09:55:29 -0700 igv (1.5.16-1) experimental; urgency=low * New upstream release. -- Shaun Jackman Fri, 06 Aug 2010 10:22:31 -0700 igv (1.5.14-1) unstable; urgency=low * New upstream release. * Remove libcolt-java from the dependencies. * Bump Standards-Version to 3.9.1. -- Shaun Jackman Wed, 28 Jul 2010 16:22:20 -0700 igv (1.5.10-1) unstable; urgency=low * New upstream release. -- Shaun Jackman Fri, 23 Jul 2010 14:19:24 -0700 igv (1.5.09-1) unstable; urgency=low * New upstream release. -- Shaun Jackman Tue, 20 Jul 2010 09:41:10 -0700 igv (1.5.07-1) unstable; urgency=low * New upstream release. -- Shaun Jackman Thu, 15 Jul 2010 09:59:01 -0700 igv (1.5.06-1) UNRELEASED; urgency=low * New upstream release. * Depend on libcolt-java. -- Shaun Jackman Wed, 14 Jul 2010 11:31:22 -0700 igv (1.5.05-1) UNRELEASED; urgency=low * New upstream release. * Added missing build-dependency: libjlibeps-java (debian/control). * Removed the fourth number in Standards-Version (debian/control, see Policy §5.6.11). * Refreshed, renamed and added DEP-3 headers to the patch to the upstream build system (debian/patches/01-build.xml) -- Charles Plessy Thu, 08 Jul 2010 13:24:10 +0900 igv (1.5.03-1) unstable; urgency=low * New upstream release. -- Shaun Jackman Tue, 06 Jul 2010 13:42:43 -0700 igv (1.5.01-1) UNRELEASED; urgency=low * New upstream release. -- Shaun Jackman Fri, 02 Jul 2010 10:26:19 -0700 igv (1.4.2-1) UNRELEASED; urgency=low * Initial release. Closes: #585457. -- Shaun Jackman Sun, 06 Jun 2010 12:41:59 -0700