infernal (1.1.5-2) unstable; urgency=medium * Team upload. * d/bin/cmalign: adjust SSE2 check to only run on i386 systems, allowing the /usr/lib/infernal/cm* apps to run on arm64 systems. -- Michael R. Crusoe Sat, 16 Sep 2023 15:58:22 +0200 infernal (1.1.5-1) unstable; urgency=medium * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) * Set field Upstream-Name in debian/copyright. * Fix typo in debian/rules rules: override_dh_compress ⇒ override_dh_compress * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * d/control: build for arm64 * d/upstream/metadata: link to their GitHub repo * d/rules: only pass -msse2 on i386 * d/patches: forward upstream -- Michael R. Crusoe Thu, 14 Sep 2023 22:03:23 +0200 infernal (1.1.4-1) unstable; urgency=medium * Enable Architecture: all builds on arm4 Closes: #976550 * New upstream version * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/rules (routine-update) * Rules-Requires-Root: no (routine-update) * No tab in license text (routine-update) -- Andreas Tille Fri, 11 Dec 2020 18:49:26 +0100 infernal (1.1.3-5) unstable; urgency=medium * Make build reproducible Closes: #953117 * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) -- Andreas Tille Wed, 04 Mar 2020 19:51:06 +0100 infernal (1.1.3-4) unstable; urgency=medium * Team upload. * fix i386 build by always setting -msse2 -- Michael R. Crusoe Sat, 07 Dec 2019 11:22:55 +0100 infernal (1.1.3-3) unstable; urgency=medium [ Chris Lamb ] * Make the build reproducible Closes: #946315 * Enable "nocheck" build profile Closes: #946314 [ Andreas Tille ] * Remove patches autoreconf.patch, format_security.patch that are missing from debian/patches/series. * debian/copyright: use spaces rather than tabs to start continuation lines. * Set upstream metadata fields: Name (from ./configure). -- Andreas Tille Sat, 07 Dec 2019 08:56:34 +0100 infernal (1.1.3-2) unstable; urgency=medium * Team upload. * Add python3 build-dep for `make check` * Secure URI in copyright format * Remove trailing whitespace in debian/changelog * Trim trailing whitespace. * Set upstream metadata fields: Bug-Submit. * Enable a verbose build log * infernal-doc: mark Multi-Arch: foreign (thanks Multiarch hinter!) * debian/patches/hardening: added CPPFLAGS to easel, rmark, and hmmer/profmark * Install example binaries into /usr/lib/ and symlink them into the doc/infernal/examples directory (fixes a FHS violation) * Added missing autopkgtest dependency on python3 -- Michael R. Crusoe Sun, 01 Dec 2019 16:35:34 +0100 infernal (1.1.3-1) unstable; urgency=medium * New upstream version - Upstream accepted patch for reproducible builds - autoreconf now works without respective non-applicable patch * Still debian/TODO: remove code copy of hmmer * debhelper-compat 12 * Standards-Version: 4.4.1 -- Steffen Moeller Sat, 30 Nov 2019 00:03:03 +0100 infernal (1.1.2-2) unstable; urgency=medium * Fix homepage * Add debian/TODO: remove code copy of hmmer * debhelper 10 * d/watch: version=4 * Added references to RRID and OMICtools registries (Steffen Moeller) * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.5 * Fix configure.ac to enable autoreconf * Fix spelling -- Andreas Tille Mon, 16 Jul 2018 12:20:32 +0200 infernal (1.1.2-1) unstable; urgency=medium * Team upload. * New upstream release. * Fix watchfile. * Make build reproducible. -- Sascha Steinbiss Sat, 06 Aug 2016 00:00:56 +0000 infernal (1.1.1-5) unstable; urgency=medium * Team upload. [Canberk Koç] * Added Autopkgtest suite * debian/rules file changed * debian/tests directory added [ Andreas Tille ] * Move packaging from SVN to Git * cme fix dpkg-control * Better hardening -- Canberk Koç Wed, 22 Jun 2016 05:35:41 +0300 infernal (1.1.1-4) unstable; urgency=medium * Architecture: any-amd64 any-i386 Closes: #815310 * cme fix dpkg-control * Secure Vcs-Browser -- Andreas Tille Sat, 20 Feb 2016 23:07:53 +0100 infernal (1.1.1-3) unstable; urgency=medium * cme fix dpkg-control * drop dpg package at all since it is auto-generated by dpkg now Closes: #766309 -- Andreas Tille Mon, 21 Dec 2015 09:35:57 +0100 infernal (1.1.1-2) unstable; urgency=medium * Re-enable i386 by checking availability of sse2 * d/copyright: Deleted unneeded paragraphs * d/rules: drop redundant targets * d/README*: drop pararaphs about squid which is not part of the source any more -- Andreas Tille Thu, 18 Sep 2014 10:00:12 +0200 infernal (1.1.1-1) unstable; urgency=medium * Team upload. * New upstream release. -- Charles Plessy Fri, 08 Aug 2014 21:45:26 +0900 infernal (1.1-1) unstable; urgency=low * Team upload. * New upstream release. * Removed i386 architecture as some processors do not provide SSE2. * Conforms with Policy 3.9.5. -- Charles Plessy Sun, 01 Dec 2013 10:30:00 +0900 infernal (1.1~rc4-2) unstable; urgency=low * Team upload. * Build-depends on libperl4-corelibs-perl (Closes: #724119). * debian/control: removed myself from Uploaders. -- Charles Plessy Mon, 23 Sep 2013 10:57:17 +0900 infernal (1.1~rc4-1) unstable; urgency=low * New upstream source * debian/source/format: 3.0 (quilt) * debian/control: - cme fix dpkg-control - debhelper 9 - do not Build-Depend: quilt since source format implies this - The package builds only on architectures with SSE instructions. Quoting from build log on armel: configure: WARNING: Infernal 1.1 requires VMX or SSE capability for parallel instructions. configure: error: It appears your platform has neither and will not support Infernal. So all non i386/amd64 architectures were excluded Closes: #718742 - use anonscm in Vcs fields * debian/rules: - remove redundant setting for flags which is handled by debhelper 9 automatically - use xz compression * debian/copyright: DEP5 -- Andreas Tille Mon, 05 Aug 2013 12:06:12 +0200 infernal (1.1~rc2-1) unstable; urgency=low * New upstream version - aiming to support RNAWorld BOINC project, with many thanks and regards to Yoyo! - cmscore no longer available * Bumped policy to 3.9.4 (no changes needed) - introduced hardening, with it build dep on dpkg-dev (>= 1.16.1~) -- Steffen Moeller Wed, 01 May 2013 20:24:17 +0200 infernal (1.0.2-3) UNRELEASED; urgency=low [ Steffen Moeller ] * Extra fixed for lintian cleanliness (Steffen) [ Andreas Tille ] * debian/upstream: - do not specify DOI twice - Moved PMID to references * debian/control: - Fixed Vcs-Svn field - Standards-Version: 3.9.3 (no changes needed) -- Andreas Tille Thu, 08 Mar 2012 11:44:54 +0100 infernal (1.0.2-2) unstable; urgency=low * Series of mall fixes (Closes: #643407). * source/format 3.0 * Policy to 3.9.2 * added infernal-dbg * corrected upstream's email address -- Steffen Moeller Tue, 27 Sep 2011 15:48:27 +0200 infernal (1.0.2-1) unstable; urgency=low * New upstream version -- Andreas Tille Tue, 03 Nov 2009 11:15:34 +0100 infernal (1.0-2) unstable; urgency=low * Switch to CDBS to benefit from automagical config.{sub,guess} update (debian/rules). Closes: #550253. * debian/control: - Depend on cdbs, downgraded requirement on debhelper from 7.1 to 7. - Transferred bibliographic information from the package description to debian/upstream-metadata.yaml. - Clarified the short description of the documentation package. * Removed debian/infernal.dirs, not needed. * Edited README.source, removing mention that infernal is in contrib. * debian/copyright points at the version 3 of the GPL. -- Charles Plessy Sat, 10 Oct 2009 11:22:35 +0900 infernal (1.0-1) unstable; urgency=low [ Charles Plessy ] * Updated my email address. [ Andreas Tille ] * New upstream version * debian/control: - Standards-Version: 3.8.3 (no changes needed) - Added myself to uploaders - s/Debian-Med/Debian Med/ - Build-Depends: debhelper (>= 7.1) autotools-dev - Package: infernal-doc * debian/rules rewritten to make use of short dh * debian/copyright: - added myself to Copyright holders of debian/* - squid is not part of the upstream tarball anymore so this paragraph was deleted - files/Userguide.pdf: Copied comment about PDF = source from README.Debian * debian/infernal-doc.doc-base * debian/infernal.install: install src/{trcyk,truncyk_check} to /usr/bin * TODO: Convince upstream to release libeazel which is also used in hmmer as a separate library instead of copying the code into different projects -- Andreas Tille Fri, 25 Sep 2009 15:17:22 +0200 infernal (0.81-1) experimental; urgency=low * Initial release (Closes: #441840) -- Steffen Moeller Mon, 10 Sep 2007 23:15:37 +0200