Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: IQ-TREE Upstream-Contact: Lam Tung Nguyen , Bui Quang Minh Source: https://github.com/Cibiv/IQ-TREE Files-Excluded: lib*/* zlib-* Eigen .* */.* Files: * Copyright: 2013-2018 Lam Tung Nguyen Heiko A. Schmidt Arndt von Haeseler Bui Quang Minh License: GPL-2+ Files: utils/gzstream.* Copyright: 2001 Deepak Bandyopadhyay, Lutz Kettner License: LGPL-2.1+ This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2.1 of the License, or (at your option) any later version. . This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. . On Debian systems you can find the full text of the GNU Lesser General Public License at /usr/share/common-licenses/LGPL-2.1. Files: lbfgsb/* Copyright: 2014 Commonwealth Scientific and Industrial Research Organisation (CSIRO) ABN 41 687 119 230 License: GPL-3+_with_additional_terms License version 3 as published by the Free Software Foundation (http://www.gnu.org/licenses/gpl.html), except where otherwise indicated for third party material. The following additional terms apply under clause 7 of that license: EXCEPT AS EXPRESSLY STATED IN THIS AGREEMENT AND TO THE FULL EXTENT PERMITTED BY APPLICABLE LAW, THE SOFTWARE IS PROVIDED "AS-IS". CSIRO MAKES NO REPRESENTATIONS, WARRANTIES OR CONDITIONS OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO ANY REPRESENTATIONS, WARRANTIES OR CONDITIONS REGARDING THE CONTENTS OR ACCURACY OF THE SOFTWARE, OR OF TITLE, MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NON-INFRINGEMENT, THE ABSENCE OF LATENT OR OTHER DEFECTS, OR THE PRESENCE OR ABSENCE OF ERRORS, WHETHER OR NOT DISCOVERABLE. TO THE FULL EXTENT PERMITTED BY APPLICABLE LAW, IN NO EVENT SHALL CSIRO BE LIABLE ON ANY LEGAL THEORY (INCLUDING, WITHOUT LIMITATION, IN AN ACTION FOR BREACH OF CONTRACT, NEGLIGENCE OR OTHERWISE) FOR ANY CLAIM, LOSS, DAMAGES OR OTHER LIABILITY HOWSOEVER INCURRED. WITHOUT LIMITING THE SCOPE OF THE PREVIOUS SENTENCE THE EXCLUSION OF LIABILITY SHALL INCLUDE: LOSS OF PRODUCTION OR OPERATION TIME, LOSS, DAMAGE OR CORRUPTION OF DATA OR RECORDS; OR LOSS OF ANTICIPATED SAVINGS, OPPORTUNITY, REVENUE, PROFIT OR GOODWILL, OR OTHER ECONOMIC LOSS; OR ANY SPECIAL, INCIDENTAL, INDIRECT, CONSEQUENTIAL, PUNITIVE OR EXEMPLARY DAMAGES, ARISING OUT OF OR IN CONNECTION WITH THIS AGREEMENT, ACCESS OF THE SOFTWARE OR ANY OTHER DEALINGS WITH THE SOFTWARE, EVEN IF CSIRO HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH CLAIM, LOSS, DAMAGES OR OTHER LIABILITY. APPLICABLE LEGISLATION SUCH AS THE AUSTRALIAN CONSUMER LAW MAY APPLY REPRESENTATIONS, WARRANTIES, OR CONDITIONS, OR IMPOSES OBLIGATIONS OR LIABILITY ON CSIRO THAT CANNOT BE EXCLUDED, RESTRICTED OR MODIFIED TO THE FULL EXTENT SET OUT IN THE EXPRESS TERMS OF THIS CLAUSE ABOVE "CONSUMER GUARANTEES". TO THE EXTENT THAT SUCH CONSUMER GUARANTEES CONTINUE TO APPLY, THEN TO THE FULL EXTENT PERMITTED BY THE APPLICABLE LEGISLATION, THE LIABILITY OF CSIRO UNDER THE RELEVANT CONSUMER GUARANTEE IS LIMITED (WHERE PERMITTED AT CSIRO’S OPTION) TO ONE OF FOLLOWING REMEDIES OR SUBSTANTIALLY EQUIVALENT REMEDIES: (a) THE REPLACEMENT OF THE SOFTWARE, THE SUPPLY OF EQUIVALENT SOFTWARE, OR SUPPLYING RELEVANT SERVICES AGAIN; (b) THE REPAIR OF THE SOFTWARE; (c) THE PAYMENT OF THE COST OF REPLACING THE SOFTWARE, OF ACQUIRING EQUIVALENT SOFTWARE, HAVING THE RELEVANT SERVICES SUPPLIED AGAIN, OR HAVING THE SOFTWARE REPAIRED. IN THIS CLAUSE, CSIRO INCLUDES ANY THIRD PARTY AUTHOR OR OWNER OF ANY PART OF THE SOFTWARE OR MATERIAL DISTRIBUTED WITH IT. CSIRO MAY ENFORCE ANY RIGHTS ON BEHALF OF THE RELEVANT THIRD PARTY. Third Party Components The following third party components are distributed with the Software. You agree to comply with the license terms for these components as part of accessing the Software. Other third party software may also be identified in separate files distributed with the Software. . R : A Computer Language for Statistical Data Analysis version 3.0.1 (http://cran.r-project.org/src/base/R-3/R-3.0.1.tar.gz) Copyright (C) 2000-2004 The R Core Team This software is licensed under GNU GPL . JACOBI_EIGENVALUE.C (http://people.sc.fsu.edu/~jburkardt/c_src/jacobi_eigenvalue/jacobi_eigenvalue.c) Copyright (C) 2003-2013 John Burkardt This software is licensed under GNU LGPL (http://www.gnu.org/licenses/lgpl.html) Files: ncl/* Copyright: 1999-2003 Paul O. Lewis License: GPL-2+ Files: pll/* Copyright: 2013 Tomas Flouri and Alexandros Stamatakis License: GPL-3+ Files: sprng/* Copyright: 2000 Mascagni, Michael and Srinivasan, Ashok License: NCSA Disclaimer: NCSA expressly disclaims any and all warranties, expressed or implied, concerning the enclosed software. The intent in sharing this software is to promote the productive interchange of ideas throughout the research community. All software is furnished on an "as is" basis. No further updates to this software should be expected. Although this may occur, no commitment exists. The authors certainly invite your comments as well as the reporting of any bugs. NCSA cannot commit that any or all bugs will be fixed. Comment: The license statement was obtained from the libsprng2 package of Debian. The code here is an incompatible copy of this library. Upstream is informed and will enable using the Debian packaged version in the next release of iqtree. Files: vectorclass/* Copyright: 2012-2014 Agner Fog License: GPL-3+ Files: whtest/* Copyright: 2009 Gunter Weiss, BUI Quang Minh, Arndt von Haeseler License: GPL-2+ Files: debian/* Copyright: 2015-2018 Andreas Tille License: GPL-2+ Files: debian/Documents_source/*.tex Copyright: 2013-2015 Lam Tung Nguyen Heiko A. Schmidt Arndt von Haeseler Bui Quang Minh License: GPL-2+ License: GPL-2+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . On Debian systems you can find the full text of the GNU General Public License version 2 or later at `/usr/share/common-licenses/GPL-2`. License: GPL-3+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . On Debian systems you can find the full text of the GNU General Public License version 3 or later at `/usr/share/common-licenses/GPL-3`.