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Files: libraries/boost_aux/boost/nowide/args.hpp libraries/boost_aux/boost/nowide/cenv.hpp libraries/boost_aux/boost/nowide/config.hpp libraries/boost_aux/boost/nowide/convert.hpp libraries/boost_aux/boost/nowide/cstdio.hpp libraries/boost_aux/boost/nowide/cstdlib.hpp libraries/boost_aux/boost/nowide/filebuf.hpp libraries/boost_aux/boost/nowide/fstream.hpp libraries/boost_aux/boost/nowide/iostream.hpp libraries/boost_aux/boost/nowide/stackstring.hpp libraries/boost_aux/boost/nowide/system.hpp libraries/boost_aux/boost/nowide/windows.hpp libraries/boost_aux/libs/nowide/src/iostream.cpp Copyright: 2012, Artyom Beilis (Tonkikh) License: BSL-1.0 Files: libraries/boost_aux/tools/bcp/add_dependent_lib.cpp libraries/boost_aux/tools/bcp/add_path.cpp libraries/boost_aux/tools/bcp/bcp.hpp libraries/boost_aux/tools/bcp/bcp_imp.cpp libraries/boost_aux/tools/bcp/bcp_imp.hpp libraries/boost_aux/tools/bcp/copy_path.cpp libraries/boost_aux/tools/bcp/file_types.cpp libraries/boost_aux/tools/bcp/fileview.cpp libraries/boost_aux/tools/bcp/fileview.hpp libraries/boost_aux/tools/bcp/licence_info.hpp libraries/boost_aux/tools/bcp/main.cpp libraries/boost_aux/tools/bcp/output_licence_info.cpp libraries/boost_aux/tools/bcp/path_operations.cpp Copyright: 2003, Dr John Maddock 2009, Dr John Maddock License: BSL-1.0 Files: libraries/boost_aux/boost/utility/detail/member_dereference.hpp libraries/boost_aux/boost/utility/detail/restricted.hpp libraries/boost_aux/boost/utility/detail/singleton_manager.hpp libraries/boost_aux/boost/utility/mutexed_singleton.hpp libraries/boost_aux/boost/utility/singleton.hpp libraries/boost_aux/boost/utility/thread_specific_singleton.hpp Copyright: 2007, Tobias Schwinger License: BSL-1.0 Files: libraries/boost_aux/boost/enum.hpp libraries/boost_aux/boost/enum/base.hpp libraries/boost_aux/boost/enum/bitfield.hpp libraries/boost_aux/boost/enum/iterator.hpp libraries/boost_aux/boost/enum/macros.hpp Copyright: 2005, Frank Laub License: BSL-1.0 Files: libraries/boost_aux/libs/thread/src/win32/tss_pe-before_1_44.cpp libraries/boost_aux/libs/thread/src/win32/tss_pe.cpp Copyright: 2007, Anthony Williams 2007, David Deakins 2007, Roland Schwarz Aaron W. LaFramboise, Roland Schwarz, Michael Glassford 2004. License: BSL-1.0 Files: libraries/boost_aux/boost/iostreams/arbitrary_positional_facade.hpp libraries/boost_aux/boost/iostreams/filter/base64.hpp Copyright: 2006, 2007, Takeshi Mouri License: BSL-1.0 Files: libraries/libsvm-3.0/svm.cpp libraries/libsvm-3.0/svm.h Copyright: 2000-2010, Chih-Chung Chang 2000-2010, Chih-Jen Lin License: BSD-2-clause Files: libraries/CSpline/CSpline.cpp libraries/CSpline/CSpline.h Copyright: 2014, James Bremner License: BSD-2-clause Files: libraries/libsvm-3.0/svm-model2code.cpp Copyright: 2010, Vanderbilt University - Nashville, TN 37232 License: Apache-2.0 Files: libraries/boost_aux/tools/bcp/scan_cvs_path.cpp Copyright: 2003, -7 John Maddock 2007, Bjorn Roald License: BSL-1.0 Files: libraries/boost_aux/boost/foreach_field.hpp Copyright: 2009, Chris Purcell. License: BSL-1.0 Files: libraries/boost_aux/tools/bcp/scan_licence.cpp Copyright: 2003, Dr John Maddock License: BSL-1.0 Files: libraries/boost_aux/boost/interprocess/detail/win32_api.hpp Copyright: Ion Gaztanaga 2005-2012. Distributed under the Boost License: BSL-1.0 Files: libraries/boost_aux/tools/bcp/licence_info.cpp Copyright: 2003 Dr John Maddock License: BSL-1.0 Files: pwiz/Version.hpp pwiz/analysis/chromatogram_processing/ChromatogramListFactory.cpp pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp pwiz/analysis/chromatogram_processing/ChromatogramListFactoryTest.cpp pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp pwiz/analysis/chromatogram_processing/ChromatogramListWrapperTest.cpp pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.cpp pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp pwiz/analysis/chromatogram_processing/ChromatogramList_FilterTest.cpp pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.cpp pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.cpp pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp pwiz/analysis/chromatogram_processing/SavitzkyGolaySmoother.hpp pwiz/analysis/chromatogram_processing/SavitzkyGolaySmootherTest.cpp pwiz/analysis/common/CwtPeakDetectorTest.cpp pwiz/analysis/common/ExtraZeroSamplesFilter.cpp pwiz/analysis/common/ExtraZeroSamplesFilter.hpp pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp pwiz/analysis/common/WhittakerSmootherTest.cpp pwiz/analysis/common/ZeroSampleFillerTest.cpp pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp pwiz/analysis/passive/MSDataAnalyzer.cpp pwiz/analysis/passive/MSDataAnalyzer.hpp pwiz/analysis/passive/MSDataAnalyzerTest.cpp pwiz/analysis/passive/MSDataCache.cpp pwiz/analysis/passive/MSDataCache.hpp pwiz/analysis/passive/MSDataCacheTest.cpp 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pwiz/data/identdata/MzidPredicates.hpp pwiz/data/identdata/Pep2MzIdent.cpp pwiz/data/identdata/Pep2MzIdent.hpp pwiz/data/identdata/Pep2MzIdentTest.cpp pwiz/data/identdata/Reader.cpp pwiz/data/identdata/Reader.hpp pwiz/data/identdata/ReaderTest.cpp pwiz/data/identdata/References.cpp pwiz/data/identdata/References.hpp pwiz/data/identdata/ReferencesTest.cpp pwiz/data/identdata/Serializer_Text.cpp pwiz/data/identdata/Serializer_Text.hpp pwiz/data/identdata/Serializer_Text_Test.cpp pwiz/data/identdata/Serializer_mzid.cpp pwiz/data/identdata/Serializer_mzid.hpp pwiz/data/identdata/Serializer_mzid_Test.cpp pwiz/data/identdata/Serializer_protXML.cpp pwiz/data/identdata/Serializer_protXML.hpp pwiz/data/identdata/Serializer_protXML_Test.cpp pwiz/data/identdata/TextWriter.hpp pwiz/data/identdata/examples.cpp pwiz/data/identdata/examples.hpp pwiz/data/misc/FrequencyDataTestData.cpp pwiz/data/misc/FrequencyDataTestData.hpp pwiz/data/misc/MinimumPepXML.cpp pwiz/data/misc/MinimumPepXML.hpp 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pwiz/data/msdata/MSnReaderTest.cpp pwiz/data/msdata/Reader.cpp pwiz/data/msdata/Reader.hpp pwiz/data/msdata/ReaderTest.cpp pwiz/data/msdata/References.cpp pwiz/data/msdata/References.hpp pwiz/data/msdata/ReferencesTest.cpp pwiz/data/msdata/SHA1OutputObserver.hpp pwiz/data/msdata/Serializer_mzML.cpp pwiz/data/msdata/Serializer_mzML.hpp pwiz/data/msdata/Serializer_mzML_Test.cpp pwiz/data/msdata/Serializer_mzXML.cpp pwiz/data/msdata/Serializer_mzXML.hpp pwiz/data/msdata/Serializer_mzXML_Test.cpp pwiz/data/msdata/SpectrumInfo.cpp pwiz/data/msdata/SpectrumInfo.hpp pwiz/data/msdata/SpectrumInfoTest.cpp pwiz/data/msdata/SpectrumIterator.cpp pwiz/data/msdata/SpectrumIterator.hpp pwiz/data/msdata/SpectrumIteratorTest.cpp pwiz/data/msdata/SpectrumListBase.hpp pwiz/data/msdata/SpectrumListBaseTest.cpp pwiz/data/msdata/SpectrumListWrapper.hpp pwiz/data/msdata/SpectrumListWrapperTest.cpp pwiz/data/msdata/SpectrumList_MGF_Test.cpp pwiz/data/msdata/SpectrumList_MSn_Test.cpp pwiz/data/msdata/SpectrumList_mzML.cpp pwiz/data/msdata/SpectrumList_mzML.hpp pwiz/data/msdata/SpectrumList_mzML_Test.cpp pwiz/data/msdata/SpectrumList_mzXML.cpp pwiz/data/msdata/SpectrumList_mzXML.hpp pwiz/data/msdata/SpectrumList_mzXML_Test.cpp pwiz/data/msdata/TextWriter.hpp pwiz/data/msdata/examples.cpp pwiz/data/msdata/examples.hpp pwiz/data/proteome/DefaultReaderList.cpp pwiz/data/proteome/DefaultReaderList.hpp pwiz/data/proteome/Diff.cpp pwiz/data/proteome/Diff.hpp pwiz/data/proteome/DiffTest.cpp pwiz/data/proteome/ProteinListWrapper.hpp pwiz/data/proteome/ProteinListWrapperTest.cpp pwiz/data/proteome/ProteomeDataFile.cpp pwiz/data/proteome/ProteomeDataFile.hpp pwiz/data/proteome/ProteomeDataFileTest.cpp pwiz/data/proteome/Reader_FASTA.cpp pwiz/data/proteome/Reader_FASTA.hpp pwiz/data/vendor_readers/ExtendedReaderList.cpp pwiz/data/vendor_readers/ExtendedReaderList.hpp pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.cpp pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp pwiz/data/vendor_readers/Thermo/Reader_Thermo.cpp pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.cpp pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.cpp pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp pwiz/utility/minimxml/SAXParserTest.cpp pwiz/utility/minimxml/XMLWriter.cpp pwiz/utility/minimxml/XMLWriter.hpp pwiz/utility/minimxml/XMLWriterTest.cpp pwiz/utility/misc/Base64Test.cpp pwiz/utility/misc/IntegerSet.cpp pwiz/utility/misc/IntegerSet.hpp pwiz/utility/misc/IntegerSetTest.cpp pwiz/utility/misc/IterationListener.cpp pwiz/utility/misc/IterationListener.hpp pwiz/utility/misc/IterationListenerTest.cpp pwiz/utility/misc/MSIHandler.cpp pwiz/utility/misc/MSIHandler.hpp pwiz/utility/misc/SHA1Calculator.cpp pwiz/utility/misc/SHA1Calculator.hpp pwiz/utility/misc/SHA1CalculatorTest.cpp pwiz/utility/misc/SHA1_ostream.hpp pwiz/utility/misc/SHA1_ostream_test.cpp pwiz/utility/misc/TabReader.cpp pwiz/utility/misc/TabReader.hpp pwiz/utility/misc/Timer.hpp pwiz/utility/misc/endian.hpp pwiz/utility/misc/endian_test.cpp Copyright: 2007, Spielberg Family Center for Applied Proteomics 2008, Spielberg Family Center for Applied Proteomics 2009, Spielberg Family Center for Applied Proteomics 2010, Spielberg Family Center for Applied Proteomics 2012, Spielberg Family Center for Applied Proteomics License: Apache-2.0 Files: pwiz/utility/math/MatchedFilter.hpp pwiz/utility/math/MatchedFilterTest.cpp pwiz/utility/math/LinearSolver.hpp pwiz/utility/math/round.hpp Copyright: 2007, Spielberg Family Center for Applied Proteomics Darren Kessner License: Apache-2.0 Files: pwiz/analysis/common/CwtPeakDetector.cpp pwiz/analysis/common/CwtPeakDetector.hpp pwiz/analysis/common/LocalMaximumPeakDetector.cpp pwiz/analysis/common/LocalMaximumPeakDetector.hpp pwiz/analysis/common/PeakDetector.hpp pwiz/analysis/common/SavitzkyGolaySmoother.cpp pwiz/analysis/common/SavitzkyGolaySmoother.hpp pwiz/analysis/common/Smoother.hpp pwiz/analysis/common/WhittakerSmoother.cpp pwiz/analysis/common/WhittakerSmoother.hpp pwiz/analysis/common/ZeroSampleFiller.cpp pwiz/analysis/common/ZeroSampleFiller.hpp pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.cpp pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefinerTest.cpp pwiz/analysis/passive/RunSummary.cpp pwiz/analysis/passive/RunSummary.hpp pwiz/analysis/proteome_processing/ProteinListFactory.cpp pwiz/analysis/proteome_processing/ProteinListFactory.hpp pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.cpp pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp pwiz/analysis/proteome_processing/ProteinList_Filter.cpp pwiz/analysis/proteome_processing/ProteinList_Filter.hpp pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp pwiz/analysis/spectrum_processing/SpectrumList_3D.cpp pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.cpp pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.cpp pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.cpp pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.cpp pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.cpp pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.cpp pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp 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pwiz/data/msdata/Index_mzML.cpp pwiz/data/msdata/Index_mzML.hpp pwiz/data/msdata/MSDataMerger.cpp pwiz/data/msdata/MSDataMerger.hpp pwiz/data/msdata/MSDataMergerTest.cpp pwiz/data/msdata/MemoryMRUCache.hpp pwiz/data/msdata/Serializer_MGF.cpp pwiz/data/msdata/Serializer_MGF.hpp pwiz/data/msdata/Serializer_MGF_Test.cpp pwiz/data/msdata/Serializer_MSn.cpp pwiz/data/msdata/Serializer_MSn.hpp pwiz/data/msdata/Serializer_MSn_Test.cpp pwiz/data/msdata/SpectrumListCache.cpp pwiz/data/msdata/SpectrumListCache.hpp pwiz/data/msdata/SpectrumListCacheTest.cpp pwiz/data/msdata/SpectrumWorkerThreads.cpp pwiz/data/msdata/SpectrumWorkerThreads.hpp pwiz/data/proteome/ProteinListCache.cpp pwiz/data/proteome/ProteinListCache.hpp pwiz/data/proteome/ProteinListCacheTest.cpp pwiz/data/proteome/ProteomeData.cpp pwiz/data/proteome/ProteomeData.hpp pwiz/data/proteome/ProteomeDataTest.cpp pwiz/data/proteome/Reader.cpp pwiz/data/proteome/Reader.hpp pwiz/data/proteome/ReaderTest.cpp pwiz/data/proteome/Serializer_FASTA.cpp pwiz/data/proteome/Serializer_FASTA.hpp pwiz/data/proteome/Serializer_FASTA_Test.cpp pwiz/data/proteome/TextWriter.hpp pwiz/data/proteome/examples.cpp pwiz/data/proteome/examples.hpp pwiz/data/tradata/DefaultReaderList.cpp pwiz/data/tradata/DefaultReaderList.hpp pwiz/data/tradata/Diff.cpp pwiz/data/tradata/Diff.hpp pwiz/data/tradata/DiffTest.cpp pwiz/data/tradata/IO.cpp pwiz/data/tradata/IO.hpp pwiz/data/tradata/IOTest.cpp pwiz/data/tradata/Reader.cpp pwiz/data/tradata/Reader.hpp pwiz/data/tradata/ReaderTest.cpp pwiz/data/tradata/References.cpp pwiz/data/tradata/References.hpp pwiz/data/tradata/ReferencesTest.cpp pwiz/data/tradata/Serializer_traML.cpp pwiz/data/tradata/Serializer_traML.hpp pwiz/data/tradata/Serializer_traML_Test.cpp pwiz/data/tradata/TextWriter.hpp pwiz/data/tradata/TraData.cpp pwiz/data/tradata/TraData.hpp pwiz/data/tradata/TraDataFile.cpp pwiz/data/tradata/TraDataFile.hpp pwiz/data/tradata/TraDataFileTest.cpp pwiz/data/tradata/TraDataTest.cpp pwiz/data/tradata/Version.hpp pwiz/data/tradata/examples.cpp pwiz/data/tradata/examples.hpp pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.cpp pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp pwiz/data/vendor_readers/ABI/Reader_ABI.cpp pwiz/data/vendor_readers/ABI/Reader_ABI.hpp pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.cpp pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp pwiz/data/vendor_readers/ABI/SpectrumList_ABI.cpp pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.cpp pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.cpp pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.cpp pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp pwiz/data/vendor_readers/Agilent/Reader_Agilent.cpp pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.cpp pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.cpp pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp pwiz/data/vendor_readers/Bruker/Reader_Bruker.cpp pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.cpp pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.cpp pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.cpp pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.cpp pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp pwiz/data/vendor_readers/UIMF/Reader_UIMF.cpp pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.cpp pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.cpp pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.cpp pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.cpp pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.cpp pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp pwiz/data/vendor_readers/Waters/Reader_Waters.cpp pwiz/data/vendor_readers/Waters/Reader_Waters.hpp pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.cpp pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp pwiz/data/vendor_readers/Waters/SpectrumList_Waters.cpp pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp pwiz/utility/misc/ClickwrapPrompter.cpp pwiz/utility/misc/ClickwrapPrompter.hpp pwiz/utility/misc/ClickwrapPrompterTest.cpp pwiz/utility/misc/DateTime.hpp pwiz/utility/misc/DateTimeTest.cpp pwiz/utility/misc/Environment.hpp pwiz/utility/misc/ExceptionTest.cpp pwiz/utility/misc/Once.hpp pwiz/utility/misc/Singleton.hpp pwiz/utility/misc/Std.hpp pwiz/utility/misc/TabReaderTest.cpp pwiz/utility/misc/VendorReaderTestHarness.cpp pwiz/utility/misc/VendorReaderTestHarness.hpp pwiz/utility/misc/cpp_cli_utilities.hpp pwiz/utility/misc/mru_list_test.cpp pwiz/utility/misc/shared_map.hpp Copyright: 2008, Vanderbilt University - Nashville, TN 37232 2009, Vanderbilt University - Nashville, TN 37232 2010, Vanderbilt University - Nashville, TN 37232 2011, Vanderbilt University - Nashville, TN 37232 2012, Vanderbilt University - Nashville, TN 37232 2014, Vanderbilt University - Nashville, TN 37232 2015, Vanderbilt University - Nashville, TN 37232 2016, Vanderbilt University - Nashville, TN 37232 License: Apache-2.0 Files: pwiz/analysis/demux/DemuxSolver.cpp pwiz/analysis/demux/DemuxSolver.hpp pwiz/analysis/demux/FSDemux.cpp pwiz/analysis/demux/IDemultiplexer.hpp pwiz/analysis/demux/IPrecursorMaskCodec.hpp pwiz/analysis/demux/MSXDemultiplexer.cpp pwiz/analysis/demux/MSXDemultiplexer.hpp pwiz/analysis/demux/OverlapDemultiplexer.cpp pwiz/analysis/demux/OverlapDemultiplexer.hpp pwiz/analysis/demux/PrecursorMaskCodec.cpp pwiz/analysis/demux/PrecursorMaskCodec.hpp pwiz/analysis/demux/SpectrumPeakExtractor.cpp pwiz/analysis/demux/SpectrumPeakExtractor.hpp pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp Copyright: Jarret Egertson License: Apache-2.0 Files: pwiz/analysis/demux/CubicHermiteSpline.cpp pwiz/analysis/demux/CubicHermiteSpline.hpp pwiz/analysis/demux/CubicHermiteSplineTest.cpp pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp pwiz/analysis/demux/DemuxDebugReader.cpp pwiz/analysis/demux/DemuxDebugReader.hpp pwiz/analysis/demux/DemuxDebugWriter.cpp pwiz/analysis/demux/DemuxDebugWriter.hpp pwiz/analysis/demux/DemuxHelpers.cpp pwiz/analysis/demux/DemuxHelpers.hpp pwiz/analysis/demux/DemuxHelpersTest.cpp pwiz/analysis/demux/DemuxSolverTest.cpp pwiz/analysis/demux/EnumConstantNotPresentException.hpp pwiz/analysis/demux/IInterpolation.hpp pwiz/analysis/demux/MatrixIO.cpp pwiz/analysis/demux/MatrixIO.hpp pwiz/analysis/demux/MatrixIOTest.cpp pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp Copyright: Austin Keller License: Apache-2.0 Files: pwiz/analysis/demux/DemuxTypes.hpp Copyright: Austin Keller Jarret Egertson License: Apache-2.0 Files: pwiz/utility/misc/BinaryData.hpp pwiz/utility/misc/BinaryData.cpp pwiz/utility/misc/BinaryDataTest.cpp Copyright: 2017 Matt Chambers License: Apache-2.0 Files: pwiz/analysis/common/DataFilter.hpp pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp pwiz/analysis/spectrum_processing/MS2NoiseFilter.cpp pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp pwiz/analysis/spectrum_processing/PrecursorMassFilter.cpp pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp Copyright: 2009, Institute for Systems Biology, Seattle, WA License: Apache-2.0 Files: pwiz/utility/findmf/base/base/interpolate.hpp pwiz/utility/findmf/base/base/copy_iftest.cpp pwiz/utility/findmf/base/base/constants.hpp pwiz/utility/findmf/base/base/scale.hpp pwiz/utility/findmf/base/base/diff.hpp pwiz/utility/findmf/base/base/cumsum.hpp pwiz/utility/findmf/base/base/utilities/interpolation.hpp pwiz/utility/findmf/base/base/utilities/base.hpp pwiz/utility/findmf/base/base/cumsumtest.cpp pwiz/utility/findmf/base/base/basetest.cpp pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp pwiz/utility/findmf/base/base/difftest.cpp pwiz/utility/findmf/base/base/copyif.hpp pwiz/utility/findmf/base/base/base.hpp pwiz/utility/findmf/base/resample/bin1d.hpp pwiz/utility/findmf/base/resample/bucket1d.hpp pwiz/utility/findmf/base/resample/masscomparefunctors.hpp pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp pwiz/utility/findmf/base/resample/convert2dense.hpp pwiz/utility/findmf/base/resample/determinbinwithtest.cpp pwiz/utility/findmf/base/resample/bucket1dtest.cpp pwiz/utility/findmf/base/resample/determinebinwidth.hpp pwiz/utility/findmf/base/resample/convert2densetest.cpp pwiz/utility/findmf/base/resample/breakspec.hpp pwiz/utility/findmf/base/filter/filter.hpp pwiz/utility/findmf/base/filter/utilities/gauss.hpp pwiz/utility/findmf/base/filter/utilities/preparedata.hpp pwiz/utility/findmf/base/filter/utilities/mexhat.hpp pwiz/utility/findmf/base/filter/filterutilstest.cpp pwiz/utility/findmf/base/filter/gaussfilter.hpp pwiz/utility/findmf/base/filter/gaussfiltertest.cpp pwiz/utility/findmf/base/ms/peakpickerqtof.hpp pwiz/utility/findmf/base/ms/simplepickertest.cpp pwiz/utility/findmf/base/ms/simplepicker.hpp Copyright: ETH Zurich - Witold Wolski License: Apache-2.0 Files: pwiz/utility/math/HouseholderQR.hpp Copyright: Robert Burke License: Apache-2.0 Files: pwiz/utility/misc/FailTest.cpp pwiz/utility/chemistry/iso.cpp pwiz/utility/chemistry/parse_isotopes.cpp pwiz/utility/math/qrTest.cpp pwiz/utility/math/HouseholderQRTest.cpp Copyright: Matthew Chambers License: Apache-2.0 Files: pwiz/analysis/frequency/DerivativeTest.hpp pwiz/analysis/frequency/FrequencyEstimator.hpp pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp pwiz/analysis/frequency/MagnitudeLorentzian.cpp pwiz/analysis/frequency/MagnitudeLorentzian.hpp pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp pwiz/analysis/frequency/ParameterEstimator.cpp pwiz/analysis/frequency/ParameterEstimator.hpp pwiz/analysis/frequency/ParametrizedFunction.hpp pwiz/analysis/frequency/ParametrizedFunctionTest.cpp pwiz/analysis/frequency/PeakDetector.hpp pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.cpp pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp pwiz/analysis/frequency/PeakDetectorNaive.cpp pwiz/analysis/frequency/PeakDetectorNaive.hpp pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp pwiz/analysis/frequency/TruncatedLorentzian.cpp pwiz/analysis/frequency/TruncatedLorentzian.hpp pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp pwiz/analysis/frequency/TruncatedLorentzianParameters.cpp pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp pwiz/analysis/frequency/TruncatedLorentzianTest.cpp pwiz/data/misc/CalibrationParameters.hpp pwiz/data/misc/CalibrationParametersTest.cpp pwiz/data/misc/FrequencyData.cpp pwiz/data/misc/FrequencyData.hpp pwiz/data/misc/FrequencyDataTest.cpp pwiz/data/misc/SampleDatum.hpp pwiz/data/misc/SampleDatumTest.cpp pwiz/data/proteome/AminoAcid.cpp pwiz/data/proteome/AminoAcid.hpp pwiz/data/proteome/AminoAcidTest.cpp pwiz/data/proteome/Peptide.cpp pwiz/data/proteome/Peptide.hpp pwiz/data/proteome/PeptideTest.cpp pwiz/utility/chemistry/Chemistry.cpp pwiz/utility/chemistry/Chemistry.hpp pwiz/utility/chemistry/ChemistryData.cpp pwiz/utility/chemistry/ChemistryData.hpp pwiz/utility/chemistry/ChemistryTest.cpp pwiz/utility/chemistry/Ion.hpp pwiz/utility/chemistry/IsotopeCalculator.cpp pwiz/utility/chemistry/IsotopeCalculator.hpp pwiz/utility/chemistry/IsotopeCalculatorTest.cpp pwiz/utility/chemistry/IsotopeTable.cpp pwiz/utility/chemistry/IsotopeTable.hpp pwiz/utility/chemistry/IsotopeTableTest.cpp pwiz/utility/misc/Base64.cpp pwiz/utility/misc/Base64.hpp pwiz/utility/misc/Image.hpp pwiz/utility/misc/unit.hpp pwiz/utility/proteome/IPIFASTADatabase.cpp pwiz/utility/proteome/IPIFASTADatabase.hpp pwiz/utility/proteome/IPIFASTADatabaseTest.cpp pwiz/utility/proteome/pepdb.cpp Copyright: 2005, Louis Warschaw Prostate Cancer Center 2006, Louis Warschaw Prostate Cancer Center 2007, Louis Warschaw Prostate Cancer Center License: Apache-2.0 Files: pwiz/utility/math/LinearLeastSquares.hpp pwiz/utility/math/LinearLeastSquaresTest.cpp pwiz/utility/math/Types.hpp pwiz/utility/math/qr.hpp Copyright: Robert Burke Louis Warschaw Prostate Cancer Center License: Apache-2.0 Files: pwiz/utility/math/LinearSolverTest.cpp pwiz/utility/math/Stats.cpp pwiz/utility/math/Stats.hpp pwiz/utility/math/StatsTest.cpp pwiz/utility/math/Parabola.cpp pwiz/utility/math/Parabola.hpp pwiz/utility/math/ParabolaTest.cpp pwiz/utility/math/erf.cpp pwiz/utility/math/erf.hpp pwiz/utility/math/erfTest.cpp Copyright: Louis Warschaw Prostate Cancer Center Darren Kessner License: Apache-2.0 Files: pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp pwiz/analysis/peakdetect/FeatureModeler.cpp pwiz/analysis/peakdetect/FeatureModeler.hpp pwiz/analysis/peakdetect/FeatureModelerTest.cpp pwiz/analysis/peakdetect/MZRTField.cpp pwiz/analysis/peakdetect/MZRTField.hpp pwiz/analysis/peakdetect/MZRTFieldTest.cpp pwiz/analysis/peakdetect/Noise.cpp pwiz/analysis/peakdetect/Noise.hpp pwiz/analysis/peakdetect/NoiseTest.cpp pwiz/analysis/peakdetect/PeakExtractor.cpp pwiz/analysis/peakdetect/PeakExtractor.hpp pwiz/analysis/peakdetect/PeakExtractorTest.cpp pwiz/analysis/peakdetect/PeakFinder.cpp pwiz/analysis/peakdetect/PeakFinder.hpp pwiz/analysis/peakdetect/PeakFinderTest.cpp pwiz/analysis/peakdetect/PeakFitter.cpp pwiz/analysis/peakdetect/PeakFitter.hpp pwiz/analysis/peakdetect/PeakFitterTest.cpp pwiz/analysis/peakdetect/PeakelGrower.cpp pwiz/analysis/peakdetect/PeakelGrower.hpp pwiz/analysis/peakdetect/PeakelGrowerTest.cpp pwiz/analysis/peakdetect/PeakelPicker.cpp pwiz/analysis/peakdetect/PeakelPicker.hpp pwiz/analysis/peakdetect/PeakelPickerTest.cpp pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.cpp pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp pwiz/utility/chemistry/MZTolerance.cpp pwiz/utility/chemistry/MZTolerance.hpp pwiz/utility/chemistry/MZToleranceTest.cpp pwiz/utility/misc/almost_equal.hpp pwiz/utility/misc/almost_equal_test.cpp Copyright: 2009, Center for Applied Molecular Medicine License: Apache-2.0 Files: pwiz/utility/math/OrderedPair.hpp pwiz/utility/math/OrderedPairTest.cpp Copyright: 2009, Center for Applied Molecular Medicine Darren Kessner License: Apache-2.0 Files: pwiz/analysis/Version.hpp pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.cpp pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp pwiz/analysis/spectrum_processing/SpectrumList_Sorter.cpp pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp pwiz/data/msdata/SpectrumList_BTDX.cpp pwiz/data/msdata/SpectrumList_BTDX.hpp pwiz/data/msdata/SpectrumList_MGF.cpp pwiz/data/msdata/SpectrumList_MGF.hpp pwiz/data/msdata/SpectrumList_MSn.cpp pwiz/data/msdata/SpectrumList_MSn.hpp pwiz/data/msdata/Version.hpp pwiz/data/proteome/Version.hpp pwiz/utility/misc/CharIndexedVector.hpp pwiz/utility/misc/Container.hpp pwiz/utility/misc/Exception.hpp pwiz/utility/misc/Export.hpp pwiz/utility/misc/Filesystem.cpp pwiz/utility/misc/Filesystem.hpp pwiz/utility/misc/FilesystemTest.cpp pwiz/utility/misc/Stream.hpp pwiz/utility/misc/String.hpp pwiz/utility/misc/optimized_lexical_cast.hpp pwiz/utility/misc/virtual_map.hpp Copyright: 2008, Spielberg Family Center for Applied Proteomics 2008, Vanderbilt University - Nashville, TN 37232 2011, Vanderbilt University - Nashville, TN 37232 License: Apache-2.0 Files: pwiz/data/proteome/Digestion.cpp pwiz/data/proteome/Digestion.hpp pwiz/data/proteome/DigestionTest.cpp pwiz/data/proteome/Modification.cpp pwiz/data/proteome/Modification.hpp Copyright: 2006, Louis Warschaw Prostate Cancer Center 2008, Vanderbilt University - Nashville, TN 37232 License: Apache-2.0 Files: pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp Copyright: 2014, Pacific Northwest National Laboratory License: Apache-2.0 Files: pwiz/utility/math/MatrixInverse.hpp Copyright: http://www.crystalclearsoftware.com/cgi-bin/boost_wiki/wiki.pl?Effective_UBLAS/Matrix_Inversion License: Public-domain or Boost Public Domain or Boost Software License - Version 1.0 Files: pwiz/utility/misc/SHA1.cpp pwiz/utility/misc/SHA1.h Copyright: Dominik Reichl License: Public-domain The work is in the public domain. Files: pwiz/utility/minimxml/SAXParser.cpp pwiz/utility/minimxml/SAXParser.hpp Copyright: 2007, Spielberg Family Center for Applied Proteomics 2011, Insilicos LLC License: Apache-2.0 Files: pwiz/data/msdata/MSNumpress.cpp pwiz/data/msdata/MSNumpress.hpp Copyright: 2013, Johan Teleman License: Apache-2.0 Files: pwiz/analysis/passive/TabularConfig.cpp pwiz/analysis/passive/TabularConfig.hpp Copyright: 2012, University of Minnesota - Minneapolis, MN 55455 License: Apache-2.0 Files: pwiz/utility/misc/random_access_compressed_ifstream.cpp pwiz/utility/misc/random_access_compressed_ifstream.hpp Copyright: 1995-2005, Jean-loup Gailly. 2005, Mark Adler Insilicos LLC 2008,2011 License: Zlib Files: pwiz/data/common/cvgen.cpp Copyright: 2007, Spielberg Family Center for Applied Proteomics License: Apache-2.0 Files: pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp Copyright: 2007, Spielberg Family Center for Appled Proteomics License: Apache-2.0 Files: pwiz/data/common/cv.hpp Copyright: 2007, Spielberg Family Center for Applied Proteomics License: Apache-2.0 Files: pwiz/utility/misc/mru_list.hpp Copyright: 2003-2008, Joaquin M Lopez Munoz. License: BSL-1.0 Files: pwiz_tools/commandline/msconvert.cpp pwiz_tools/commandline/pepcat.cpp pwiz_tools/common/FullReaderList.hpp pwiz_tools/common/MSDataAnalyzerApplication.cpp pwiz_tools/common/MSDataAnalyzerApplication.hpp pwiz_tools/common/MSDataAnalyzerApplicationTest.cpp pwiz_tools/examples/hello_analyzer.cpp pwiz_tools/examples/hello_analyzer_2.cpp pwiz_tools/examples/hello_msdata.cpp pwiz_tools/examples/mscat.cpp pwiz_tools/examples/txt2mzml.cpp pwiz_tools/examples/write_example_files.cpp pwiz_tools/examples/write_mzid_example_files.cpp pwiz_tools/examples/write_traml_example_files.cpp Copyright: 2007, Spielberg Family Center for Applied Proteomics 2008, Spielberg Family Center for Applied Proteomics 2009, Spielberg Family Center for Applied Proteomics 2010, Spielberg Family Center for Applied Proteomics License: Apache-2.0 Files: pwiz_tools/commandline/idconvert.cpp pwiz_tools/examples/write_proteome_example_files.cpp Copyright: 2010, Vanderbilt University - Nashville, TN 37232 2011, Vanderbilt University - Nashville, TN 37232 License: Apache-2.0 Files: libraries/Eigen/nnls.h* Copyright: 2013 Hannes Matuschek License: MPL-2.0 This Source Code Form is subject to the terms of the Mozilla Public License v. 2.0. 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