mafft (7.205-1) unstable; urgency=medium * New upstream version -- Andreas Tille Thu, 23 Oct 2014 22:28:10 +0200 mafft (7.187-1) unstable; urgency=medium * New upstream release. * Conforms to Policy 3.9.6. -- Charles Plessy Sun, 05 Oct 2014 09:00:33 +0900 mafft (7.164-1) unstable; urgency=medium * New upstream version -- Andreas Tille Mon, 04 Aug 2014 15:04:10 +0200 mafft (7.158-1) unstable; urgency=medium * New upstream release. -- Charles Plessy Sun, 13 Jul 2014 20:26:22 +0900 mafft (7.157-1) unstable; urgency=medium * New upstream release. * debian/control - Added substitution variable ${perl:Depends}, used by Debhelper. - Recommend libwww-perl used by the script ‘seekquencer_premafft.pl’. -- Charles Plessy Wed, 18 Jun 2014 08:10:02 +0900 mafft (7.149-1) unstable; urgency=medium * New upstream release. -- Charles Plessy Sat, 12 Apr 2014 13:46:13 +0900 mafft (7.147-1) unstable; urgency=medium * New upstream release. -- Charles Plessy Sun, 30 Mar 2014 19:40:37 +0900 mafft (7.130-1) unstable; urgency=low * New upstream release. * Correct ‘XS-Testsuite’ to ‘Testsuite’ in debian/control. -- Charles Plessy Sun, 19 Jan 2014 08:25:50 +0900 mafft (7.127-1) unstable; urgency=low * New upstream release. * debian/tests/with-example-data: Don't write progress to stderr on success. Closes: #728190, thanks to Martin Pitt . * Conforms with Policy 3.9.5. * Pass CPPFLAGS within CFLAGS. -- Charles Plessy Sat, 30 Nov 2013 17:30:14 +0900 mafft (7.123-1) unstable; urgency=low * New upstream version. * Correct watch file, which was downloading the non-free version. This error did not affect the current stable release of Debian. * debian/tests/with-example-data: disable multithreading to stabilise output. -- Charles Plessy Wed, 16 Oct 2013 08:22:20 +0900 mafft (7.058-1) unstable; urgency=low * New upstream version incorporated debian/patches Closes: #715827, #715830, #715831, #715847, #715881 -- Andreas Tille Sun, 04 Aug 2013 08:51:10 +0200 mafft (7.055-1) unstable; urgency=low [ Charles Plessy ] * Signal the use of autopkgtest in debian/control (closes: #692683). [ Andreas Tille ] * New upstream version * debian/README.source: removed because redundant * debian/patches/hardening.patch: Enable propagation of hardening options * debian/control: use anonscm in Vcs fields -- Andreas Tille Tue, 30 Jul 2013 13:39:43 +0200 mafft (6.940-1) unstable; urgency=low [ Charles Plessy ] * New upstream release (no new license nor copyright statement). * Removed unnecessary build-dependance on quilt. * Test for regressions with autopkgtest insted of doing it at build time. (debian/control, debian/tests/control, debian/tests/with-example-data) * debian/control: - Removed 'Pre-Depends: dpkg (>= 1.15.6)' now that Ubuntu LTS 12.04 is out. - Increment Standards-Version to show conformance with Policy 3.9.4. - Removed DM-Upload-Allowed field. - Normalised with the command cme fix dpkg-control. - Use Debhelper 9 (also debian/compat). * Pass dpkg build flags in debian/rules. [ Andreas Tille ] * debian/upstream: - Single Reference field instead of Reference-* - Add additional reference from tasks file - Authors in BibTeX conform format -- Charles Plessy Sun, 14 Oct 2012 15:42:54 +0900 mafft (6.864-1) unstable; urgency=low * New upstream release. * Pre-Depends on dpkg (>= 1.15.6) for xz compression support (debian/control). * Renamed debian/README.Debian debian/README.test. * Track the new website in debian/watch. -- Charles Plessy Thu, 12 Jan 2012 19:00:31 +0900 mafft (6.860-1) unstable; urgency=low * New upstream release. * Simplified debian/watch. * Updated Homepage (debian/control). * Compress binary package with xz (debian/control). -- Charles Plessy Sun, 18 Sep 2011 14:43:10 +0900 mafft (6.859-1) unstable; urgency=low * New upstream release. * Converted debian/copyright to machine-readable (DEP 5) format. -- Charles Plessy Sat, 27 Aug 2011 12:06:00 +0900 mafft (6.857-1) unstable; urgency=low * New upstream version. * Enable multithread, correct FHS path (debian/rules). * Removed extra manpage copies instead of patching Makefile and installing via debhleper (debian/patches, debian/rules, debian/manpages). * Removed debian/dirs, not needed anymore. * Run the tests after installation, and allow them to fail (debian/rules). * Build when running debian/rules build (override typo, Closes: #636634). * Corrected VCS fields in debian/control. * Incremented Standards-Version to reflect conformance wiht Policy 3.9.2 (debian/control, no changes needed). -- Charles Plessy Fri, 05 Aug 2011 09:54:09 +0900 mafft (6.850-1) unstable; urgency=low * New upstream version * Adapted patch to new upstream * Debhelper 8 (control + compat) * debian/rules: Switch to dh * debian/links: override broken symlinks created in Makefile -- Andreas Tille Sat, 12 Mar 2011 00:02:43 +0100 mafft (6.833-1) unstable; urgency=low * New upstream version -- Andreas Tille Wed, 17 Nov 2010 13:51:28 +0100 mafft (6.815-1) unstable; urgency=low * New upstream version * Switch to source format 3.0 (quilt) * Standards-Version: 3.9.1 (no changes needed) -- Andreas Tille Thu, 05 Aug 2010 10:29:50 +0200 mafft (6.811-1) unstable; urgency=low * New upstream version * Standards-Version: 3.8.4 (no changes needed) -- Andreas Tille Thu, 24 Jun 2010 13:08:06 +0200 mafft (6.717-1) unstable; urgency=low * New upstream version * Added a few informations about Upstream in debian/upstream-metadata.yaml. * Documented how this package is tested in debian/README.Debian. * Refreshed debian/copyright, using the verbatim upstream license, indented with a tabulation. -- Charles Plessy Mon, 14 Dec 2009 13:02:59 +0900 mafft (6.716-1) unstable; urgency=low * New upstream version -- Andreas Tille Tue, 03 Nov 2009 12:39:12 +0100 mafft (6.713-1) unstable; urgency=low [ David Paleino ] * debian/control: - removed myself from Uploaders [ Andreas Tille ] * New upstream version * debian/control: - Standards-Version: 3.8.3 (no changes needed) - s/Debian-Med/Debian Med/ - Recommends: blast2, lynx, ruby (instead of Suggests - we have a Ruby script in /usr/bin using blast and lynx. * debhelper 7 * No need for debian/patches/Securisation-by-mktemp-usage.patch any more * debian/watch: Handle -with.*-extensions naming - we are dealing with the without-extensions tarball in Debian -- Andreas Tille Mon, 28 Sep 2009 09:02:30 +0200 mafft (6.240-2) unstable; urgency=high [ Charles Plessy ] * debian/control: - Moved the Homepage: field out from the package's description. - Enhances: t-coffee. * Updated my email address. * Securisation of the temorary files of mafft-homologs: - debian/control: build-depend on quilt. - debian/rules: modified to use quilt. - debian/README.source: signals that the package uses quilt. - debian/patches: added a patch to use non-guessable temporary files (Closes: #496366). Thanks to Dmitry E. Oboukhov for finding the bug, Thijs Kinkhorst for preliminary, Kazutaka Katoh for the final implementation, and Michael Schutte for the final review. - debian/mafft-homologs.1*, debian/README.Debian: document that the program is patched. [ David Paleino ] * debian/mafft.1, debian/mafft-homologs.1 added - manpages built statically. * debian/control: - B-D updated (see above) - added myself to Uploaders - moved XS-Vcs-* fields to Vcs-* - Updated to Standards-Version 3.7.3 (no changes needed) * debian/rules: - reflecting static build of manpages - minor changes -- Charles Plessy Mon, 25 Aug 2008 23:30:20 +0900 mafft (6.240-1) unstable; urgency=low * Initial release (Closes: #409640) -- Charles Plessy Sat, 9 Jun 2007 12:06:43 +0900