Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Source: http://micans.org/mcl/src/ Files-Excluded: */*.1 */doc/*.ps */*.html */Makefile.in Upstream-Name: mcl Files: * Copyright: © 1999-2014 Stijn van Dongen License: GPL-3+ Comment: Citation If you use MCL software in your scientific research, please cite it appropriately as you would cite a journal or a book. This includes papers published in regular or electronic journals, usage of MCL as a back-end to a database that is accessible via a web interface, or inclusion of MCL in a larger framework of software that is distributed for other people for scientific use. Include one of the following citations: . Stijn van Dongen, Graph Clustering by Flow Simulation. PhD thesis, University of Utrecht, May 2000. ( http://www.library.uu.nl/digiarchief/dip/diss/1895620/inhoud.htm ) . Stijn van Dongen. A cluster algorithm for graphs. Technical Report INS-R0010, National Research Institute for Mathematics and Computer Science in the Netherlands, Amsterdam, May 2000. ( http://www.cwi.nl/ftp/CWIreports/INS/INS-R0010.ps.Z ) . and proper attributions to mcl's home http://micans.org/mcl/ and its author, Stijn van Dongen. The publications listed above can be retrieved from the preceding URL. . If you are using some wrapper around mcl such as the blast module or the tribe module, you are asked to act likewise. . For biological applications, it is appropriate to cite, additionally, the reference article for the first application of mcl to biological data: . Enright A.J., Van Dongen S., Ouzounis C.A. An efficient algorithm for large-scale detection of protein families, Nucleic Acids Research 30(7):1575-1584 (2002). Files: src/alien/oxygen/src/mcxdeblast Copyright: © 2002-2009 Stijn van Dongen, © 2004 Jason Stajich License: GPL-3+ Files: util/rand.* Copyright: © 2004-2009 Stijn van Dongen, © 2005 Jochen Voss License: GPL-3+ Files: debian/* Copyright: © 2001-2007 Joost van Baal , © 2007-2013 Philipp Benner , © 2014-2017 Andreas Tille License: GPL-3+ License: GPL-3+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . On Debian systems you can find the full text of the GNU General Public License version 3 at /usr/share/common-licenses/GPL-3.