mothur (1.48.1-1) unstable; urgency=medium * New upstream version 1.48.1 * Refresh patches -- Tomasz Buchert Sun, 02 Jun 2024 10:19:46 +0200 mothur (1.48.0-2) unstable; urgency=medium * Team upload. * Fix batch file for autopkgtest (Closes: #1014104) * Add patch to add hardening flags * Refresh patch -- Mohammed Bilal Sat, 06 Aug 2022 14:24:47 +0000 mothur (1.48.0-1) unstable; urgency=medium * New upstream version 1.48.0 * Refresh patches -- Tomasz Buchert Mon, 20 Jun 2022 13:58:22 +0200 mothur (1.46.1-1) unstable; urgency=medium [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * Fix build with gcc-11 Closes: #984243 * Follow parts of the hints by Aaron M. Ucko * Fix linking [ Hamid Nassiby ] * Fix linking -- Andreas Tille Mon, 08 Nov 2021 18:08:09 +0100 mothur (1.44.3-2) unstable; urgency=medium * Do not include sys/sysctl.h since it will be removed and is not used anyway Closes: #967985 * Standards-Version: 4.5.1 (routine-update) * Set upstream metadata fields: Repository, Repository-Browse. -- Andreas Tille Fri, 04 Dec 2020 22:37:41 +0100 mothur (1.44.3-1) unstable; urgency=medium * New upstream version 1.44.3 * Remove fix_makefile patch -- Tomasz Buchert Fri, 04 Sep 2020 09:34:50 +0200 mothur (1.44.2-1) unstable; urgency=medium * New upstream version * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Fix include Closes: #963288 * Fix makefile * Do not build uchime explicitly in d/rules -- Andreas Tille Wed, 22 Jul 2020 11:35:13 +0200 mothur (1.44.1-1) unstable; urgency=medium * Update d/watch to cover releases such as "v.1.44.1" * New upstream version 1.44.1 -- Tomasz Buchert Mon, 18 May 2020 09:38:14 +0200 mothur (1.44.0-1) unstable; urgency=medium [ Steffen Möller ] * Added ref to conda * Update metadata ref to bio.tools [ Tomasz Buchert ] * New upstream version 1.44.0 * Standards-Version: 4.5.0 * Refresh debian/patches -- Tomasz Buchert Wed, 06 May 2020 11:27:19 +0200 mothur (1.42.1-1) unstable; urgency=medium * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.0 * Use secure URI in Homepage field. -- Andreas Tille Thu, 01 Aug 2019 19:24:04 +0200 mothur (1.41.21-1) unstable; urgency=medium * Do not report pre-releases * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * override_dh_dwz -- Andreas Tille Wed, 30 Jan 2019 11:24:42 +0100 mothur (1.40.5-2) unstable; urgency=medium * Upstream dropped MPI support since it is slower and requires dual maintenance (see README.Debian) Thus dropping MPI support from Debian package Closes: #908786 * Remove Tim Booth from Uploaders (Tim, thanks for your work on this package) * Drop unneeded get-orig-source target * Standards-Version: 4.2.1 -- Andreas Tille Fri, 14 Sep 2018 10:29:24 +0200 mothur (1.40.5-1) unstable; urgency=medium * New upstream version 1.40.5 -- Tomasz Buchert Tue, 26 Jun 2018 18:04:50 +0200 mothur (1.40.4-1) unstable; urgency=medium * New upstream version 1.40.4 -- Tomasz Buchert Sat, 16 Jun 2018 15:58:20 +0200 mothur (1.40.3-1) unstable; urgency=medium [ Steffen Moeller ] * debian/upstream/metadata: - added references to registries - yamllint cleanliness [ Tomasz Buchert ] * fix insecure-copyright-format-uri * use debhelper compat 11 * New upstream version 1.40.3 [ Andreas Tille ] * Spacing * Remove invalid fields from debian/upstream/metadata -- Tomasz Buchert Sat, 19 May 2018 15:48:02 +0200 mothur (1.39.5-2) unstable; urgency=medium * Team upload. [ Nadiya Sitydykova ] * Add simple autopkgtest test-suite -- Nadiya Sitdykova Mon, 19 Jun 2017 22:00:56 -0400 mothur (1.39.5-1) unstable; urgency=medium * New upstream version 1.39.5 * d/patches: refresh -- Tomasz Buchert Sat, 25 Mar 2017 12:02:56 +0100 mothur (1.39.4-1) unstable; urgency=medium * New upstream version 1.39.4 * Refresh patches -- Tomasz Buchert Tue, 14 Mar 2017 23:28:09 +0100 mothur (1.39.3-1) unstable; urgency=medium [ Steffen Moeller ] * Corrected EDAM annotation file [ Tomasz Buchert ] * New upstream version 1.39.3 * Refresh patches -- Tomasz Buchert Sun, 26 Feb 2017 15:56:50 +0100 mothur (1.38.1.1-1) unstable; urgency=medium * New upstream version Closes: #846486 * debhelper 10 * d/watch: version=4 * Fix spelling -- Andreas Tille Sat, 10 Dec 2016 08:23:57 +0100 mothur (1.38.0-1) unstable; urgency=medium * Imported Upstream version 1.38.0 -- Tomasz Buchert Sat, 30 Jul 2016 01:16:52 +0200 mothur (1.37.6-1) unstable; urgency=medium * Imported Upstream version 1.37.6 -- Tomasz Buchert Wed, 22 Jun 2016 22:15:49 +0200 mothur (1.37.5-1) unstable; urgency=medium * Imported Upstream version 1.37.5 -- Tomasz Buchert Sun, 12 Jun 2016 19:58:02 +0200 mothur (1.37.3-1) unstable; urgency=medium * New upstream version * cme fix dpkg-control * better description for mothur-mpi * propagate hardening options to uchime build * better hardening -- Andreas Tille Sat, 07 May 2016 17:54:19 +0200 mothur (1.36.1-1) unstable; urgency=medium * Imported Upstream version 1.36.1 * d/watch: switch to github & don't repack * d/copyright: update and improve * d/rules: make build simpler * d/patches: refresh and reapply * d/control: build with boost library * d/control: bump std-ver to 3.9.6 * d/patches: pass compiler flags properly * Added myself as uploader * move packaging from SVN to Git -- Tomasz Buchert Mon, 07 Sep 2015 10:49:18 +0200 mothur (1.33.3+dfsg-2) unstable; urgency=medium * Re-Add changes from BioLinux which reads in SVN: Add the important .pat files and tell Mothur how to find them (certainly not in /usr/bin) (see debian/patches/find_pat_files) -- Andreas Tille Fri, 25 Apr 2014 17:39:09 +0200 mothur (1.33.3+repack-0biolinux2) trusty; urgency=low * Refresh patches and build for Ubuntu Trusty -- Tim Booth Thu, 24 Apr 2014 18:41:42 +0100 mothur (1.33.3+dfsg-1) unstable; urgency=medium * New upstream version -- Andreas Tille Sat, 22 Mar 2014 21:33:31 +0100 mothur (1.33.0+dfsg-1) unstable; urgency=medium * New upstream version * debian/upstream -> debian/upstream/metadata * Standards-Version: 3.9.5 -- Andreas Tille Tue, 25 Feb 2014 13:31:27 +0100 mothur (1.31.2+dfsg-2) unstable; urgency=low * Team upload. * debian/patches/makefile.patch: Leave off -m64, which ia64 doesn't support and other 64-bit architectures don't need. (Closes: #721770.) -- Aaron M. Ucko Wed, 04 Sep 2013 22:37:31 -0400 mothur (1.31.2+dfsg-1) unstable; urgency=low * New upstream version * debian/watch: use dversionmangle to properly detect new upstream versions * debian/copyright: Add Files-Excluded to document what was removed from original source * debian/rules: Use enhanced uscan * debian/control: - cme fix dpkg-control - debhelper 9 - use anonscm for Vcs fields * debian/patches/uchime_hardening.patch: Hardening for uchime * debian/uchime.1 * debian/patches/spelling.patch: Some spelling corrections -- Andreas Tille Tue, 30 Jul 2013 14:32:44 +0200 mothur (1.31.2+repack-0biolinux1) precise; urgency=low * New upstream * All patches look OK -- Tim Booth Fri, 16 Aug 2013 12:09:01 +0100 mothur (1.30.2+repack-0ubuntu1) precise; urgency=low * New upstream * Drop unneeded patch from last time -- Tim Booth Tue, 30 Apr 2013 11:56:20 +0100 mothur (1.29.0+repack-0ubuntu1) precise; urgency=low * New upstream for January * Patch to fix compilation on MPI - not sure if it is right -- Tim Booth Tue, 15 Jan 2013 14:51:19 +0000 mothur (1.28.0+repack-precise2) precise; urgency=low * New upstream, build for precise * Enable mpi for 32-bit, for completeness * Note that this should really be version -0ubuntu2, but its too late to go there * Parallel build enabled -- Tim Booth Thu, 10 Jan 2013 15:22:35 +0000 mothur (1.27.0+repack-precise1) precise; urgency=low * Remove -march=native from makefile as this makes the result depend on the build machine - so a package built on a Core3 CPU won't work on a Xeon. -- Tim Booth Fri, 12 Oct 2012 11:41:04 +0100 mothur (1.27.0+repack-precise2) precise; urgency=low * New minor release from upstream * Build MPI version alongside regular version * ...but only for 64-bit -- Tim Booth Wed, 10 Oct 2012 11:20:43 +0100 mothur (1.25.0~repack-lucid3) lucid; urgency=low * Removed dependency on catchall - this belongs in the bio-linux-mothur package. Not sure what I was thinking there. -- Tim Booth Mon, 14 May 2012 10:57:22 +0100 mothur (1.25.0~repack-lucid2) lucid; urgency=low * Fix 32-bit build and add uchime (which should be packaged separately, but I've no time for that just now) -- Tim Booth Thu, 10 May 2012 10:43:04 +0100 mothur (1.25.0~repack-lucid1) lucid; urgency=low * Rebuild for Lucid with repack fudge again -- Tim Booth Wed, 09 May 2012 11:20:15 +0100 mothur (1.25.0-1) UNRELEASED; urgency=low * New upstream release * debian/upstream: more complete authors information in proper BibTeX format -- Andreas Tille Tue, 08 May 2012 18:00:19 +0200 mothur (1.24.1-1) unstable; urgency=low * New upstream version - adpated patches - droped debian/patches/kfreebsd.patch because it was applied upstream -- Andreas Tille Tue, 03 Apr 2012 09:05:44 +0200 mothur (1.23.1-1) unstable; urgency=low * New upstream version (including updating patches) * debian/upstream: - fixed typo: s/TITILE/TITLE/ - Moved DOI+PMID to references * debian/control: - Standards-Version: 3.9.3 (no changes needed) - Build-Depends: gfortran * debian/get-orig-source: - be not that verbose - more reproducible creation of tarball - Strip some useless files from tarball (.*; *.o) * debhelper 9 (control+compat) * debian/copyright: DEP5 changes and verified using cme fix dpkg-copyright -- Andreas Tille Thu, 08 Mar 2012 14:52:47 +0100 mothur (1.22.2-2) unstable; urgency=low * debian/patches/kfreebsd.patch: Enable build on BSD machines (thanks to Christoph Egger and Robert Millan ) Closes: #650683 * debian/control: Fixed Vcs fields * debian/{control,rules}: drop explicite quilt dependency which is just given by source format 3.0 (quilt) -- Andreas Tille Tue, 06 Dec 2011 17:14:49 +0100 mothur (1.22.2~repack-ubuntu1) lucid; urgency=low * Backport for Ubuntu * Need to fudge version as upstream was repacked by Andreas' script -- Tim Booth Mon, 05 Dec 2011 17:37:16 +0000 mothur (1.22.2-1) unstable; urgency=low * New upstream version * debian/patches/drop_sse_option.patch: Fix for FTBFS: unrecognized command line option '-msse2' (Thanks for the patch to Nobuhiro Iwamatsu ) Closes: #648255 -- Andreas Tille Thu, 10 Nov 2011 08:38:32 +0100 mothur (1.22.1-1) unstable; urgency=low [ Thorsten Alteholz ] * new upstream version * adapted patches to this version * debian/control: no dependency on quilt needed * debian/control + debian/compat: dh version set to >= 8 [ Andreas Tille ] * debian/control: readd quilt dependency because build fails otherwise * debian/copyright: fix spelling error -- Andreas Tille Mon, 07 Nov 2011 11:14:17 +0100 mothur (1.18.1-1) unstable; urgency=low * New upstream version (adapted patches to new location of makefile) * debian/rules: No need to specify SOURCEDIR any more * Added Tim Booth as Uploader, removed Sri Girish Srinivasa Murthy from uploaders * Standards-Version: 3.9.2 (no changes needed) -- Andreas Tille Tue, 26 Apr 2011 19:58:45 +0200 mothur (1.18.0-1ubuntu1) lucid; urgency=low * Rebuild for PPA * Source now comes in subdirectory Mothur.source - modify rules file to handle this -- Tim Booth Thu, 14 Apr 2011 14:50:24 +0100 mothur (1.17.3-1) unstable; urgency=low * New upstream version, which specifically solves some copyright questions of ftpmaster (Charles, thanks for reviewing debian/copyright) Closes: #589675 * Updated patches * debian/copyright: Clarified license issues -- Andreas Tille Wed, 30 Mar 2011 09:01:52 +0200 mothur (1.15.0-1ubuntu1) lucid; urgency=low * Rebuild for upload to PPA, license or not. -- Tim Booth Sun, 30 Jan 2011 12:14:18 +0000 mothur (1.15.0-1) unstable; urgency=low * Initial release (Closes: #589675) -- Andreas Tille Wed, 02 Feb 2011 08:59:45 +0100