mummer (3.23+dfsg-7) unstable; urgency=medium * Team Upload. * Ignore build date in docs (Makes build reproducible) * Propagate CPPFLAGS to enable hardening (fixes blhc) * Update d/u/metadata * Declare compliance with policy 4.5.1 -- Nilesh Patra Sat, 26 Dec 2020 21:30:06 +0530 mummer (3.23+dfsg-6) unstable; urgency=medium [ Étienne Mollier ] * Team upload. * Removed dependency to C-Shell. [ Andreas Tille ] * Remove csh from docs * debhelper-compat (= 13) -- Étienne Mollier Thu, 23 Jul 2020 20:31:54 +0200 mummer (3.23+dfsg-5) unstable; urgency=medium [ Charles Plessy ] * Fix Perl compatibility error in mummerplot Closes: #956746 [ Andreas Tille ] * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 12 (routine-update) * Build-Depends: csh to enable build-time tests * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) -- Andreas Tille Wed, 15 Apr 2020 08:37:33 +0200 mummer (3.23+dfsg-4) unstable; urgency=medium [ Helmut Grohne ] * Fix FTCBFS: Let dh_auto_build pass cross tools to make. (Closes: #901261) [ Andreas Tille ] * Standards-Version: 4.1.4 * Point Vcs-fields to Salsa * debhelper 11 * doc-base: debhelper 11 moves docs to /usr/share/doc/mummer - adapt path -- Andreas Tille Mon, 11 Jun 2018 08:38:49 +0200 mummer (3.23+dfsg-3) unstable; urgency=low * Team upload [ Fabian Klötzl ] * improve performance of delta2maf [ Steffen Moeller ] * Corrected EDAM annotation file [ Afif Elghraoui ] * d/watch: point to new upstream repository at GitHub [ Andreas Tille ] * Update d/copyright -- Afif Elghraoui Sun, 11 Feb 2018 18:02:05 -0500 mummer (3.23+dfsg-2) unstable; urgency=medium * Deactivate broken patch from mugsy that was taken over in last Debian release Closes: #843621 * debhelper 10 * d/watch: version=4 -- Andreas Tille Thu, 17 Nov 2016 21:32:47 +0100 mummer (3.23+dfsg-1) unstable; urgency=medium * Team upload [ Andreas Tille ] * Moved packaging from SVN to Git * d/copyright: use Files-Excluded to clean up upstream source * cme fix dpkg-control * fix more spelling issues * hardening=+all [ Canberk Koç ] * Autopkgtest added -- Canberk Koç Sun, 24 Jul 2016 01:53:16 +0300 mummer (3.23~dfsg-3) unstable; urgency=medium * Moved debian/upstream to debian/upstream/metadata * Add some patches from mugsy enhancing functionality by adding two tools * Add some patches from mugsy to include delta-filter -b for reporting duplications * cme fix dpkg-control * Remove SF privacy breach script from docs * Fix manpage syntax and add missing manpage * Propagate hardening options -- Andreas Tille Mon, 13 Apr 2015 22:29:27 +0200 mummer (3.23~dfsg-2) unstable; urgency=low * debian/enable_building_with_tetex.patch: enable building with recent tetex by changing the layout slightly (s/a4wide/a4/) Closes: #669521 * debian/control: Standards-Version: 3.9.3 (no changes needed) * Debhelper 9 (control+compat) -- Andreas Tille Sat, 21 Apr 2012 22:43:17 +0200 mummer (3.23~dfsg-1) unstable; urgency=low * New upstream release adding -D and --banded option to nucmer. * Updated debian/patches/02at_docs_web.diff. * Corrected VCS URLs (debian/control). * Conforms to Policy 3.9.2 (debian/control, no other changes needed). * Using Debhelper 8 (debian/control, debian/compat). * Support DEB_BUILD_OPTIONS via Debhelper (debian/rules). * Use dpkg source format 3.0 (quilt) as a patch system (debian/rules, debian/control, debian/source/format). * Simplify debian/rules using dh. * Pass Dpkg build flags in CFLAGS (debian/rules). -- Charles Plessy Tue, 07 Feb 2012 15:01:26 +0900 mummer (3.22~dfsg-2) unstable; urgency=low [ Andreas Tille ] * Make sure scripts will use the installation path instead of the temporary build path Closes: #575105 * Make real use of debian/sh-replacement-scripts and drop csh (build-)dependency * incremented Standards-Version to reflect concordance with Debian Policy 3.8.4 (no changes needed). * install tandem-repeat.awk which was lacking from installation previousely [ Charles Plessy ] * Updated upstream-metadata.yaml to use simple key=value form instead of BibTeX entry -- Andreas Tille Wed, 24 Mar 2010 17:10:43 +0000 mummer (3.22~dfsg-1) unstable; urgency=low * New upstream release: 3.22 - Significant 'dnadiff' bug fixes. - Unaligned contig output format switched to match show-diff format. - Dynamic memory allocation for run-mummer1. - Turned off output of the near useless .cluster files from nucmer and promer (let us know if you still want them). 3.21 - gcc compatibility fix. * debian/get-orig-source: rename mutilated upstream tarball. * debian/control: - incremented Standards-Version to reflect concordance with Debian Policy 3.8.3 (no changes needed). - mummer-docs depends on ${misc:Depends}. - dropped versionned dependencies when they are even satisfied in oldstable. - dropped dependency on CDBS and patchutils, and added dependency on quilt. - using Debhelper 7 (debian/compat). - build-depend on csh for correct interpreter path detection. * debian/patches: - replaces some Makefile patches by environment variables in debian/rules. - replaced 02at_scripts.diff by separate files in sh-replacement-scripts. - added a series file to use Quilt. - dropped the patch ‘01sm_src_tigr.diff’ that allowed to use MUMmer on computers with less that 512 Mo of memory and is now obsoleted by this release. - refreshed the 02at_docs_web.diff patch that redirects the links for the suppressed PDF files to the upstream website. * debian/rules converted to debhelper (the build system is too odd to be handled gently by CDBS without patches). * Mangled ‘~dfsg’ from the Debian version number in debian/watch. * Converted debian/copyright to a machine-readable format. * Documented the PDF deletion and the patching in ‘debian/README.source’. * Turned the get-orig-source shell script into a debian/rule target. * Added an experimental collection of upstream metadata in YAML format (debian/upstream-metadata.yaml). -- Charles Plessy Mon, 12 Oct 2009 18:12:18 +0900 mummer (3.20-3) unstable; urgency=low * Changed the doc-base section according to the new policy. * Added myself to the `Uploaders' field in `debian/control'. * Removed `debian/mummer.dirs', that was only creating empty directories. -- Charles Plessy Mon, 07 Jul 2008 10:33:20 +0900 mummer (3.20-2) unstable; urgency=low [ Charles Plessy ] * XS-DM-Upload-Allowed: Yes [ Steffen Moeller ] * Changed e-mail address in uploaders * Stripped long description of mummer-doc [ Andreas Tille ] * Do not install mummer.desktop because it is a command line application (Fixed debian/mummer.desktop anyway) * Standards-Version: 3.7.3 (no changes needed) -- Andreas Tille Thu, 10 Jan 2008 12:13:24 +0100 mummer (3.20-1) unstable; urgency=low * New upstream version * Fixed watch file (Thanks to Nelson A. de Oliveira ) Closes: #450211 * Do not autogenerate debian/control * debian/rules: get-orig-source target that removes non-free docs * debian/rules: Fixed building docs * Separated patches tigr and kurtz; better Makefile for scripts * Added manpage link for dnadiff and mentioned dnadiff in debian/mummer.1 * Used "Office" as main Freedesktop.Org category (not sure whether this is a really good choice) -- Andreas Tille Wed, 07 Nov 2007 13:25:34 +0100 mummer (3.19-1) unstable; urgency=low * Initial Release (Closes: Bug#201761). Thanks to Steffen Moeller who prepared a package for version 3.17 and just some cleanups were left. * New Standards-Version (no changes needed) * Switched to cdbs to simplify handling of patches * debian/compat: 5 -- Andreas Tille Mon, 07 May 2007 14:11:09 +0200