muscle3 (3.8.1551-3) unstable; urgency=medium * Team upload. * makefile.patch: mark forwarding not-needed. * 01_Fix_FTBFS_Hurd.patch: mark forwarding missing. * d/control: declare compliance to standards version 4.6.2. * d/s/lintian-overrides: remove now unused override. * d/clean: new: cleanup build artifacts. (Closes: #1048044) -- Étienne Mollier Sun, 17 Dec 2023 15:04:37 +0100 muscle3 (3.8.1551-2) unstable; urgency=medium * Team upload. * Source-only upload. -- Étienne Mollier Sat, 03 Dec 2022 21:11:07 +0100 muscle3 (3.8.1551-1) unstable; urgency=medium * Re-introduce muscle version 3 as a different program (see https://lists.debian.org/debian-med/2022/11/msg00080.html) Closes: #1024746 * Epoch can be dropped since the package name was changed * Standards-Version: 4.6.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Use secure URI in Homepage field. * Fix day-of-week for changelog entry 3.52-1. * Rename binary and docs to muscle3 * Lintian-override (see lintian bug #1017966) -- Andreas Tille Thu, 24 Nov 2022 09:44:25 +0100 muscle (1:3.8.1551-2) unstable; urgency=medium [ Helmut Grohne ] * Fix FTCBFS: Pass C++ compilers as GPP. (Closes: #922994) [ Andreas Tille ] * Delete outdated README.Debian * debhelper 12 * Standards-Version: 4.3.0 -- Andreas Tille Fri, 22 Feb 2019 22:13:23 +0100 muscle (1:3.8.1551-1) unstable; urgency=medium * New upstream version * Review watch file (no need to exclude files any more * Remove useless get-orig-source target * Source is now in main dir * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Secure URI in copyright format * Remove trailing whitespace in debian/changelog -- Andreas Tille Mon, 29 Oct 2018 09:42:54 +0100 muscle (1:3.8.31+dfsg-3) unstable; urgency=medium * Team upload. * Fix FTCBFS: Do not hard code build architecture compiler g++. Thanks to Helmut Grohne for the patch. Closes: #871513 * Bump Standards-Version. -- Sascha Steinbiss Tue, 08 Aug 2017 22:06:30 +0200 muscle (1:3.8.31+dfsg-2) unstable; urgency=low * Team upload [ Steffen Moeller and Hervé Ménager] * Introducing EDAM ontology annotation in debian/upstream/edam [ Canberk Koç ] * autopkgtest added * debian/example.fa added [ Andreas Tille ] * cme fix dpkg-control * hardening=+all -- Canberk Koç Thu, 30 Jun 2016 04:31:26 +0300 muscle (1:3.8.31+dfsg-1) unstable; urgency=low [ Andreas Tille ] * debian/upstream/metadata: Added citations * debian/control: - Standards-Version: 3.9.3 (no changes needed) - debian/source/format: 3.0 (quilt) * Moved packaging from SVN to Git * cme fix dpkg-control * Mark repackaged orig.tar properly with +dfsg * debhelper 9 * Remove information from README.Debian that became redundant by debian/upstream/metadata * Remove README.source since it is redundant by debian/control Files-Excluded [ Dylan Aïssi ] * debian/copyright: Fixed lintian dep5-copyright-license-name-not-unique -- Andreas Tille Mon, 18 Jan 2016 20:51:21 +0100 muscle (1:3.8.31-1) unstable; urgency=low [ Charles Plessy ] * New upstream release (Closes: #643443). * debian/control: Enhances: t-coffee. * Changed the doc-base section according to the new policy. * Updated my email address. * Updated debian/watch to new version scheme and download location. * Repack usptream archive and implemented a get-orig-source target (debian/rules, debian/README.source, debian/copyright). * Use Debhelper 8 (debian/control, debian/compat). * Build directly from debian/rules targets. * Corrected VCS URLs in debian/control. * Conforms to Debian Policy 3.9.2 (debian/control, no changes needed). [ David Paleino ] * removed myself from Uploaders (debian/control). -- Charles Plessy Sun, 13 Nov 2011 18:38:06 +0900 muscle (3.70+fix1-2) unstable; urgency=low * debian/control Conflicts: and Replaces: muscle-doc (Closes: #465607) -- Charles Plessy Thu, 14 Feb 2008 10:44:17 +0900 muscle (3.70+fix1-1) unstable; urgency=low [ Charles Plessy ] * New upstream version, buildable with GCC 4.3 (Closes: #462707) The version number was not increased upstream when the sources were changed. We name this new version in Debian "3.70+fix1". * Updated manual page. * Converted the source package to CDBS, dropped Makefile patch. * Fused muscle and muscle-doc. [ Nelson A. de Oliveira ] * Fixed watch file (Closes: #462827) -- Charles Plessy Wed, 06 Feb 2008 12:04:31 +0900 muscle (3.70-1) unstable; urgency=low [ Charles Plessy ] * New upstream release (bugfixes plus undocumented new features). * debian/control: - Add Subversion repository. - Swiched to quilt. - Enhaces: seaview because SeaView can call muscle to re-align sequences. - Moved the Homepage: field out from the package's description. - Using debhelper 5. - Removed [Biology] from package description as there are Debtags now. - Checked that muscle conforms to Policy 3.7.3. - Updated Steffen's email address. * Handling nostrip build option (policy 10.1) (Closes: #437599). * Updated manpage. * debian/copyright made machine-readable. [ Nelson A. de Oliveira ] * Added watch file. [ David Paleino ] * debian/manpage.xml moved to debian/muscle.1.xml * debian/muscle.1 added - statically built * debian/manpages removed - passing arguments to dh_installman directly * debian/control: - B-D updated (see above) - added myself to Uploaders - moved XS-Vcs-* to Vcs-* * debian/rules: - manpages statically built - minor changes -- Charles Plessy Sat, 12 Jan 2008 16:55:48 +0900 muscle (3.60-1) unstable; urgency=low * New upstram release (Closes: Bug#361742). * New maintainers email addresses. -- Charles Plessy Sat, 5 Aug 2006 09:57:27 +0900 muscle (3.52-2) unstable; urgency=low * Added missing build dependencies (Closes: Bug#287684). -- Steffen Moeller Wed, 29 Dec 2004 21:50:47 +0200 muscle (3.52-1) unstable; urgency=low * New upstream version. * Fix build on arch other than Pentium (Closes: Bug#285000). -- Steffen Moeller Sat, 18 Dec 2004 00:06:00 +0200 muscle (3.51-1) unstable; urgency=low * Initial Release (Closes: Bug#280411). -- Steffen Moeller Sun, 19 Sep 2004 00:51:19 +0200