nipy (0.6.0-1) unstable; urgency=medium [ Andreas Tille ] * Add alternatives liblapack-dev | liblapack.so, libblas-dev | libblas.so, [ Komolehin Israel Timilehin ] * Added autopkgtest [ Étienne Mollier ] * New upstream version (Closes: #1056693, #1056823) * Remove trailing whitespace in debian/changelog (routine-update) * sphinx-ext patch: delete: applied upstream. * numpy-fix.patch: delete: issues fixed upstream. * numpy1.24.patch: delete: applied upstream. * nibabel5.0.0.patch: delete: applied upstream. * nibabel5.1.0.patch: delete: issue fixed upstream. * standard-gifty-support.patch: delete: fixed upstream. * remove-imagefileerror.patch: delete: fixed upstream. * python3-shebang.patch: new: ensure scripts run python3. * d/rules: remove execute_before_dh_auto_build. The numpy automated patching and the recompilation of cython objects have become unneed. * d/control: build depends on python3-mesonpy. * d/rules: remove all tests overrides. With the new system, pybuild is now capturing the test suite properly. * d/control: tests depend on python3-transforms3d. * d/rules: remove unexport of LDFLAGS. The underlying issue with distutils is not current anymore. * d/control: remove dependency on nose. (Closes: #1018423) * d/rules: reinforce documentation building process. * d/{control,rules}: migrate to dh-sequence-python3. * d/t/control: tests depend on pytest. * d/copyright: delete reference to removed file. * d/copyright: bump upstream copyright year. -- Étienne Mollier Sat, 30 Dec 2023 23:49:25 +0100 nipy (0.5.0-8) unstable; urgency=medium [ Yaroslav Halchenko ] * removed myself and Michael since we have not attended to this package for awhile [ Étienne Mollier ] * nibabel5.0.0.patch: update following review upstream. Thanks to Chris Markiewicz and Yaroslav Halchenko * d/control: build depends on pybuild-plugin-pyproject. * nibabel5.1.0.patch: new: resolve test failures. These test failures are related to the introduction of the newer nibabel version in Debian, which deprecates a couple of functions, resulting in some build time test errors in nipy. (Closes: #1042053) * standard-gifty-support.patch: new: fix gifti error. * remove-imagefileerror.patch: new: remove obsolete import. -- Étienne Mollier Thu, 17 Aug 2023 21:07:20 +0200 nipy (0.5.0-7) unstable; urgency=medium * Team upload. * d/control: build depends on python3-pytest. * nibabel5.0.0.patch: add; fix unit test failure with nibabel 5. (Closes: #1030138) -- Étienne Mollier Tue, 31 Jan 2023 22:51:15 +0100 nipy (0.5.0-6) unstable; urgency=medium [ Étienne Mollier ] * d/control: add myself to uploaders. * d/rules: dynamically patch numpy aliases. [ Bas Couwenberg ] * Add gbp.conf to use pristine-tar & --source-only-changes by default. [ Étienne Mollier ] * numpy1.24.patch: add; fix remaining test failure. (Closes: #1027255, #1028778) * d/copyright: bump copyright year. * d/*.lintian-overrides: remove; unused overrides. -- Étienne Mollier Sat, 14 Jan 2023 14:53:10 +0100 nipy (0.5.0-5) unstable; urgency=medium * Team upload. * d/rules: regenerate C source from .pyx with Cython. (Closes: #1024036) * d/control: manpages unreadable currently, so disabled. * d/control: bring back support to all python3 versions. -- Étienne Mollier Thu, 05 Jan 2023 23:41:51 +0100 nipy (0.5.0-4) unstable; urgency=medium * Team Upload. * Add patch to fix FTBFS (Closes: #1026484) * Bump SV to 4.6.2 -- Nilesh Patra Wed, 21 Dec 2022 19:11:34 +0530 nipy (0.5.0-3) unstable; urgency=medium * Team upload. [ Andreas Tille ] * Standards-Version: 4.6.1 (routine-update) [ Étienne Mollier ] * d/control: only support python3-dev (3.10) instead of python3-all-dev. This buys some time while failure to build against Python 3.11 (see #1024036) is addressed upstream. -- Étienne Mollier Tue, 15 Nov 2022 21:16:44 +0100 nipy (0.5.0-2) unstable; urgency=medium * Team upload. * Drop debug package Closes: #994315 -- Andreas Tille Wed, 22 Sep 2021 15:41:40 +0200 nipy (0.5.0-1) unstable; urgency=medium [ Michael R. Crusoe ] * Team upload. * debian/patches: removed very old patches cleaned up patch headers * debian/watch: modernize to version 4 * debian/control: add Multi-Arch metadata as per the hinter * Drop patches merged upstream. * debian/rules: adjust path to scripts during the tests [ Steffen Moeller ] * Fix watchfile to detect new versions on github (routine-update) [ Andreas Tille ] * Standards-Version: 4.6.0 (routine-update) -- Andreas Tille Thu, 02 Sep 2021 21:37:24 +0200 nipy (0.4.3~rc1-1) unstable; urgency=medium [ Andreas Tille ] * Team upload. * Resolve nipy autopkgtest failure due to numpy testing decorators Closes: #959138 * Fix homepage (thanks to Drew Parsons) Closes: #961846 * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * watch file standard 4 (routine-update) * Do not force maintainers to install Build-Depends on local machine [ Yaroslav Halchenko ] * debian/patches + 0001-BF-avoid-relying-on-Pythonic-casting-of-bool-into-nu.patch for compatibility with sympy >= 1.6 * debian/rules - exclude test_interpolator test for now, failing, reported upstream https://github.com/nipy/nipy/issues/468 due to scipy jump from 1.5.4-1+b1 to 1.6.0-2 - exclude resample_outvalue for now, reported upstream https://github.com/nipy/nipy/issues/471 -- Yaroslav Halchenko Sat, 20 Feb 2021 02:57:19 -0500 nipy (0.4.2-3) unstable; urgency=medium * Team upload. * Move package to Debian Med team maintenance * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Use default git repository layout so debian/gbp.conf can be deleted * Revert debhelper-compat 12 to 10 since Neurodebian maintainers need this for backports -- Andreas Tille Wed, 19 Feb 2020 21:34:18 +0100 nipy (0.4.2-2.1) experimental; urgency=medium [ Stuart Prescott ] * Non-maintainer upload. * Finish off Python 3 packaging work (Closes: #937143). * Add Rules-Requires-Root: no. * Update to debhelper-compat (= 12). * Use packaged mathjax for documentation. * Make building robust to multiple threads. * Update Standards-Version to 4.5.0 (no changes required). [ Andreas Tille ] * Team upload. * Point Vcs fields to Salsa * Standards-Version: 4.3.0 * Testsuite: autopkgtest-pkg-python * Secure URI in copyright format * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Remove trailing whitespace in debian/changelog * Do not parse d/changelog * Build-Depends: s/python-sphinx/python3-sphinx/ * remove outdated debian/pycompat * Use pybuild [ Michael R. Crusoe ] * Switch to Python 3 only package. -- Stuart Prescott Fri, 31 Jan 2020 18:09:16 +1100 nipy (0.4.2-2) unstable; urgency=medium * Cherry picked a number of fixes from upstream/PRs to become a part of the next release (Closes: #906388) * debian/control - fixed up Vcs fields to point to salsa -- Yaroslav Halchenko Thu, 10 Jan 2019 11:05:31 -0500 nipy (0.4.2-1) unstable; urgency=medium * Fresh upstream release * debian/patches - dropped changesets - upstreamed - deb_no_ipython_console_highlight for now to not require that sphinx extension -- Yaroslav Halchenko Mon, 19 Feb 2018 11:06:56 -0500 nipy (0.4.1-2) unstable; urgency=medium * Boost statement of policy compliance to 4.1.2 * Boost debhelper compat from 7 to 9 - $@ should come before the options (like --buildsystem=python_distutils) * debian/patches - picked up few patches from upstream to avoid infinite recursion in sympy -- Yaroslav Halchenko Mon, 18 Dec 2017 10:01:44 -0500 nipy (0.4.1-1) unstable; urgency=medium * Fresh upstream release - should resolve some failing tests (Closes: #848745) - dropping absorbed changeset* patches -- Yaroslav Halchenko Sun, 30 Jul 2017 21:20:58 -0400 nipy (0.4.0+git26-gf8d3149-2) unstable; urgency=medium * debian/pathes picked up few fixes from upstream adjusting some tests for compatibility - 78ced182c4b4583c9a2ed3c1fc01764941560c72 TST: relax test precision a little for 32-bit (replaces "custom" up_relax_assumption patch) - 32cb61eab2e92525c2497294d3be40e361507c4e (fixed failing doctest) - 751531a2894e69383f75e6a9b97586e74759ab1b BF: allow for generic IOError-based exception to be thrown when loading non existing file (Closes: #836538) * .gitignore, debian/source/options - to not ignore .diff files since interfers with helper to CP them from upstream -- Yaroslav Halchenko Sun, 04 Sep 2016 10:18:55 -0400 nipy (0.4.0+git26-gf8d3149-1) unstable; urgency=medium * New upstream snapshot from 0.4.0-26-gf8d3149 - various compatibility fixes (Closes: #816983) * debian/rules - fixed up PATH/invocation of scripts so that manpages generate and tests pass -- Yaroslav Halchenko Wed, 03 Aug 2016 22:54:08 -0400 nipy (0.3.0+git262-gbb838d7-1) unstable; urgency=medium * New upstream snapshot from 0.3.0-261-ge34a388 * debian/patches - deb_use_internal_ipythonsphinx_extensions -- dropped, upstream uses sphinx's copy now * debian/upstream moved into debian/upstream/metadata * debian/{control,rules} - use libjs-underscore for underscore.js -- Yaroslav Halchenko Fri, 03 Oct 2014 16:50:34 -0400 nipy (0.3.0-2) UNRELEASED; urgency=medium * debian/patches - deb_use_internal_ipythonsphinx_extensions to use sphinx-provided inheritance_diagram (Closes: #706532) - up_relax_assertion - relax assertion to almost_equal, permittable (Closes: #729594) * debian/{control,rules} - switch away from pysupport - policy boost to 3.9.6 -- Yaroslav Halchenko Fri, 03 Oct 2014 08:30:13 -0400 nipy (0.3.0-1) unstable; urgency=low * New upstream release * debian/watch - fixed up for the recent github changes * debian/rules - add scripts/ into PATH while testing and building documentation - generate manpages for the scripts -- Yaroslav Halchenko Sun, 03 Feb 2013 11:36:54 -0500 nipy (0.2.0-1) unstable; urgency=low * New upstream release: documentation and example improvements and functionality fixes since rc2. * Updated debian/patches/lucid-dsc-patch-nodoc to build no -doc package on older releases -- Yaroslav Halchenko Sun, 22 Jul 2012 10:50:06 -0400 nipy (0.2.0~rc2+git27-g7b9b5a5-1) unstable; urgency=low * New upstream pre-release snapshot from origin/master at 0.2.0rc2-27-g7b9b5a5 -- Yaroslav Halchenko Sat, 30 Jun 2012 00:02:45 -0400 nipy (0.2.0~rc2-1) unstable; urgency=low * Fresh RC (Closes: #673489) - addresses python 2.5 compatibility * debian/watch - added to fetch from github tags -- Yaroslav Halchenko Tue, 19 Jun 2012 21:03:28 -0400 nipy (0.2.0~rc1+git170-g5d2dc33-1) unstable; urgency=low * Yet another development release snapshot not intended for public - based on current master 6fc3af4 with pull requests #171 and #183 merged * Boosted policy compliance to 3.9.3 -- no changes * debian/copyright: removed obsolete entries, adjusted for DEP5 -- Yaroslav Halchenko Sat, 12 May 2012 22:19:00 -0400 nipy (0.2.0~rc1-1) experimental; urgency=low * Release candidate * Add epoch to versioned depends on numpy (Closes: #658372) (Thanks Jakub Wilk for the report and patch) -- Yaroslav Halchenko Mon, 30 Apr 2012 11:36:17 -0400 nipy (0.1.999-2) unstable; urgency=low * Recommend sympy (thanks Chris Filo Gorgolewski for the report) * Respect PYTHONPATH while running tests -- Yaroslav Halchenko Sun, 12 Feb 2012 10:59:44 -0500 nipy (0.1.999-1) unstable; urgency=low * Alpha release in preparation for upcoming 0.2.0 release (Closes: #581394) * No changes within upstream codebase (Closes: #643225) * Do not unittest if nocheck is provided (Closes: #649620) * Boosted policy compliance to 3.9.2 -- no changes * Patch lucid-dsc-patch-nodoc to avoid trying to build -doc on lucid due to the failure to install needed build-depends -- Yaroslav Halchenko Sun, 27 Nov 2011 22:06:21 -0500 nipy (0.1.2+201100720-2) unstable; urgency=low * Merged commits from upstream contributed by Matthew Brett to fix failing unittests on big-endians. Current upstream point: upstream/0.1.2+20110404-74-g698b432 -- Yaroslav Halchenko Sat, 23 Jul 2011 22:34:15 -0400 nipy (0.1.2+201100720-1) unstable; urgency=low * Fresh upstream snapshot: 2c11ae604762105a4adaa46c57e95dc1998485eb - might address FTBFS due to tests on some architectures -- Yaroslav Halchenko Wed, 20 Jul 2011 10:01:30 -0400 nipy (0.1.2+20110404-1) unstable; urgency=low * Fresh upstream snapshot: c213cc2421686b5485e43db54ec2ac8a5fa06ea6 - Relies on external nibabel module instead of internal outdated copy. Should close 611316, which would be done upon successfull build across the architectures. - Does not use PyNIfTI any longer, so it is removed from *Depends now - Absorbed all Debian patches * No cdbs was used since nearly a year ago -- removed it from Build-Depends -- Yaroslav Halchenko Mon, 04 Apr 2011 09:54:56 -0400 nipy (0.1.2+20110114-1) unstable; urgency=low * Fresh upstream snapshot: 136acf09beff315226e4cfa07066b1f5998e9d5e * Carries numpydoc compatible with sphinx >= 1.0 (Closes: #588625) * Do not compress objects.inv necessary for intersphinx (Closes: #608763) * Added few patches (submitted upstream) to fix building of documentation - 0001-make-few-classes-new-style-derive-from-object.patch - 0002-make-classes-without-new-style-derive-from-object.patch - 0003-import-similarity_measures-as-_sms-in-histogram_regi.patch * Adjusted debian/rules: - run unittests now against default python version on the installed version of nipy. Skipped unittests due to known failures or non-labile tests subject to random data: test_slice_from_3d, test_screen, test_lips3_disjoint, test_mu2tet, test_input_effects, test_same_basis, test_fullrank, test_ec, test_apply_affine, test_lips1_disjoint, test_dtrsm - assure Agg matplotlib backend during documentation build and unittests * Added *-dsc-patch-nodbg backport-dsc patches to avoid building of -dbg package since python-scipy-dbg is missing on lenny or ubuntu releases prior maverick (not sufficient anyways due to other missing versioned build-dependencies atm -- matplotlib, sympy) * Versioned Build-Dependency sympy >= 0.6.6 -- Yaroslav Halchenko Fri, 14 Jan 2011 19:33:28 -0500 nipy (0.1.2+20101206-1) UNRELEASED; urgency=low * Fresh upstream snapshot: a0fd6c6c62d91315cdeb8bc81e19f355b12f8013 Never officially released, thus changelogs moved upstairs -- Yaroslav Halchenko Thu, 13 Jan 2011 21:02:35 -0500 nipy (0.1.2+20100526-2) unstable; urgency=medium * Strict version dependency on NumPy to assure ABI compatibility in the future (Closes: #590737). Thanks Kumar Appaiah for the reminder. * debian/copyright: - Added missing copyrights/licenses - Adjusted formatting to match DEP5 rev 135 - Citing BSD-3 license verbatim to be compliant with 3.9.0 * Boosted policy compliance to 3.9.1 (BSD-3 license verbatim) * Medium urgency for faster propagation of RC bug fix into squeeze * Added gbp.conf file for easy building using g-b-p -- Yaroslav Halchenko Fri, 06 Aug 2010 11:17:05 -0400 nipy (0.1.2+20100526-1) unstable; urgency=low * Fresh upstream snapshot -- needed a new orig.tar.gz since some files were moved/removed * Switching to dh from cdbs: - Assure no documentation is built during binary-arch builds (closes: #581204, #581783) - Build for all supported Python versions - Expanded Build-Depends with all necessary -dbg packages (e.g. cython-dbg, python-all-dbg) - Added dvipng into Build-Depends for avoiding problems during documentation build -- Yaroslav Halchenko Tue, 11 May 2010 21:17:20 -0400 nipy (0.1.2+20100505-1) unstable; urgency=low * Fresh upstream snapshot (Closes: #577898). Switching from bzr rev to git dated versioning for nipy for now * Debian packaging moved to be on top of a newly created git repository for nipy upstream * Adhering to a new deb source format 3.0 (quilt) * Policy compliance to 3.8.4 (no changes due) * Switching over to NeuroDebian team * -doc: no pdf's for Documentation (removed texlive, texlive-latex-extra from Build-Depends) (Closes: #567757) * Confirming (and refactoring) NMUs from Kumar (THANKS!): + As promised, closing the issue with absent i386 builds (Closes: #562246) + Adding both PATH= and MPLCONFIGDIR= for building docs + Addressed fortran binding issue with patchless solution: unexport of LDFLAGS in debian/rules which brings -shared back to game (see #535699 for more information) -- Yaroslav Halchenko Tue, 04 May 2010 23:01:12 -0400 nipy (0.1.2+1741-2.2) unstable; urgency=low * Non-maintainer upload. * Use $(CURDIR) instead of $(PWD) in debian/rules. (Closes: #535699) -- Kumar Appaiah Sun, 31 Jan 2010 08:40:11 -0600 nipy (0.1.2+1741-2.1) unstable; urgency=medium * Non-maintainer upload. * Fix "FTBFS: Tries to write to $HOME during build" using Peter Green's patch. * In addition, make package buildable by hacking the build system to use -shared and -lpython for all gfortran using modules. (Closes: #535699) -- Kumar Appaiah Sun, 31 Jan 2010 00:40:11 -0600 nipy (0.1.2+1741-2) unstable; urgency=low * Adjusted long descriptions to follow the guidelines and to become complete sentences with redundant prefixes (closes: #532860) -- Yaroslav Halchenko Fri, 12 Jun 2009 16:56:54 -0400 nipy (0.1.2+1741-1) unstable; urgency=low * Initial release (Closes: #522353) -- Experimental Psychology Maintainers Tue, 14 Apr 2009 18:21:44 -0400