nipype (1.9.0-1) unstable; urgency=medium [ Alexandre Detiste ] * remove dependency on python3-funcsigs (Closes: #1081079) * python3-looseversion is packaged, use it [ Étienne Mollier ] * New upstream version 1.9.0 (Closes: #1064732, #1084625, #1085740) * d/copyright: document nipype/external/due.py, under BSD-2-Clause. * remove-dead-code.patch: remove dead patch. * d/patches/*: unfuzz all patches that needed it. * d/control: tests depend on python3-puremagic. * fixup-strict-digraph-test.patch: new: nudge a test to pass. * d/patches/*: normalize Last-Update. * d/control: migrate to pyproject. * d/control: declare compliance to standards version 4.7.0. -- Étienne Mollier Mon, 04 Nov 2024 21:45:12 +0100 nipype (1.8.6-3) unstable; urgency=medium * Team upload. * remove extraneous dependency on python3-mock -- Alexandre Detiste Sun, 18 Feb 2024 17:49:44 +0100 nipype (1.8.6-2) unstable; urgency=medium * Team upload. * Drop python3-future from (Build-)Depends Closes: #1058058 * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) -- Andreas Tille Tue, 12 Dec 2023 11:03:06 +0100 nipype (1.8.6-1) unstable; urgency=medium * New upstream version 1.8.6 (Closes: #1042133) * d/control: remove fsl-core from suggestions. This package has been removed from unstable. * 010*_*.patch: delete: applied upstream. * deb_skip_doctest_pybids patch: refresh. * d/control: add myself to uploaders. * fix-privacy-breaches.patch: new: remove links from documentation. These links are automatically loaded upon reading the documentation, due to being images or stylesheets. * d/t/control: autopkgtest depends on python3-all. -- Étienne Mollier Fri, 18 Aug 2023 09:29:10 +0200 nipype (1.8.5-3) unstable; urgency=medium * Team upload. * Simplify and fix skipping test on s390x * Add several patches to fix issue https://github.com/nipy/nipype/issues/3537 -- Andreas Tille Wed, 01 Feb 2023 17:40:58 +0100 nipype (1.8.5-2) unstable; urgency=medium * Team upload. * Exclude single test on s390x * New version builds with latest nibabel Closes: #1029660 -- Andreas Tille Thu, 26 Jan 2023 20:15:29 +0100 nipype (1.8.5-1) unstable; urgency=medium * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) * Remove constraints unnecessary since buster (oldstable): + python3-nipype: Replace dependency on transitional package fsl with replacement fsl-core in Suggests. * As long as Python3 module looseversion is not packaged yet use distutils instead -- Andreas Tille Thu, 26 Jan 2023 11:14:30 +0100 nipype (1.7.1-2) unstable; urgency=medium * Team upload. * d/p : Add patch to make builds reproducible * Add autopkgtests Run build-time tests also as autopktests * Update lintian-override -- Mohammed Bilal Tue, 23 Aug 2022 18:23:37 +0000 nipype (1.7.1-1) unstable; urgency=medium * Team upload. * New upstream version 1.7.1-1 (Closes: #1008430) * Refresh patches, drop tcompcor.patch: merged upstream * Add patch to fix test_CompCor.py -- Nilesh Patra Mon, 02 May 2022 21:24:33 +0530 nipype (1.7.0-1) unstable; urgency=medium [ Andreas Tille ] * Team upload. * Fix watchfile to detect new versions on github (routine-update) * New upstream version 1.6.1 * Standards-Version: 4.6.0 (routine-update) * Trim trailing whitespace. * Use secure copyright file specification URI. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Apply multi-arch hints. + python-nipype-doc: Add Multi-Arch: foreign. * watch file standard 4 (routine-update) [ Étienne Mollier ] * New upstream version 1.7.0 * Refresh deb_skip_doctest_pybids patch * Add tcompcor.patch: fixes test failures. Thanks to Chris Markiewicz (Closes: #997126) * Adjust lintian overrides to python3-nipype and rename tag. * Add override to missing source: false positive -- Étienne Mollier Sun, 07 Nov 2021 10:31:14 +0100 nipype (1.6.0-2) unstable; urgency=medium * Team upload. * Source-only upload * Remove debian/blends * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) -- Andreas Tille Thu, 24 Dec 2020 07:43:31 +0100 nipype (1.6.0-1) unstable; urgency=medium * Recent upstream release - requires python3-librdf >= 5.0.0 (dropping patches/deb_no_neurdflib which was initially introduced by upstream as a workaround) * d/patches - sphinx.patch - also exclude niflow-nipype1-workflows and disable git cloning of an external repository * d/control - temporarily remove python3-nipy in build-depends (not installable ATM) * d/rules - skip nipype.interfaces.io.BIDSDataGrabber doctest since causes internal pytest trouble in backport to debian stable (buster), and anyways would be skipped ATM since we do not have python3-bids ATM. -- Yaroslav Halchenko Fri, 11 Dec 2020 15:19:50 -0500 nipype (1.5.0~rc1-1) experimental; urgency=medium [ Andreas Tille ] * Move package to Debian Med team * Drop debian/gbp.conf since repository was converted to default layout * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 12 (routine-update) * Point Vcs fields to salsa.debian.org (routine-update) * Build Python3 module instead of Python2 Closes: #937144, #932197 * Switch from cdbs to dh * Remove outdated debian/README.{Debian,source} * Remove outdated debian/{pyversions,pycompat} * DEP3 * Build-Depends: python3-filelock, python3-sphinxcontrib.apidoc, python3-nbsphinx, python3-etelemetry * Upstream switched from BSD-3 to Apache-2.0 license [ Yaroslav Halchenko ] * Finalize for upload with endless gratitude to Andreas TODO: Some strange sphinx issue remaining when trying to build the package -- Yaroslav Halchenko Sun, 22 Mar 2020 12:10:16 -0400 nipype (1.1.9-1) experimental; urgency=medium * Fresh upstream release -- Yaroslav Halchenko Thu, 14 Mar 2019 22:40:32 -0400 nipype (1.1.8-1) unstable; urgency=medium * Fresh upstream release -- Yaroslav Halchenko Sun, 03 Feb 2019 19:16:00 -0500 nipype (1.1.7-2) neurodebian; urgency=medium * d/p/deb_no_strict_versions - do not require recent pytest - version was boosted upstream only to workaround problems with some CIs, and now forbids us to use backport -- Yaroslav Halchenko Mon, 14 Jan 2019 12:30:32 -0500 nipype (1.1.7-1) unstable; urgency=medium * Fresh upstream release * debian/patches - refreshed and upstramed changeset_* dropped - added deb_no_neurdflib to avoid requiring neurdflib for now. All the RDF handling dependencies are too much in flux ATM. Let's see if the reset of functionality/tests pass during building. -- Yaroslav Halchenko Mon, 17 Dec 2018 14:45:19 -0500 nipype (1.1.3-1) unstable; urgency=medium * Fresh upstream release * debian/control + Suggest python-bids -- Yaroslav Halchenko Mon, 08 Oct 2018 10:57:16 -0400 nipype (1.1.1-2) unstable; urgency=medium * debian/control - point vcs fields to salsa * debian/patches/deb_simplify_requires temporary patch to resolve uninstallable state on older debian/ubuntus -- Yaroslav Halchenko Thu, 09 Aug 2018 14:26:03 -0400 nipype (1.1.1-1) unstable; urgency=medium * Fresh upstream release * debian/control + python-concurrent.futures and python-pydot to B-Depends and Depends for python-nipype -- Yaroslav Halchenko Fri, 03 Aug 2018 13:00:43 -0400 nipype (1.0.3-1) unstable; urgency=medium * Fresh upstream release -- Yaroslav Halchenko Tue, 15 May 2018 14:38:10 -0400 nipype (1.0.2-3) neurodebian; urgency=medium * debian/patches/deb_no_strict_versions - to allow for python-prov 1.4.0 and above see https://github.com/nipy/nipype/issues/2531 - allow python-traits >= 4.5 see https://github.com/nipy/nipype/issues/2346 -- Yaroslav Halchenko Mon, 09 Apr 2018 18:52:08 -0400 nipype (1.0.2-1) unstable; urgency=medium * New upstream release * debian/patches - refreshed * debian/control - added explicit dependency on python-dateutil (>= 2.2) as upstream - added python-pytest-xdist into bdepends since tests now use -n auto -- Yaroslav Halchenko Wed, 28 Mar 2018 08:50:08 -0400 nipype (1.0.1-1) unstable; urgency=medium * Fresh upstream release * debian/control - added python-numpydoc to build-depends * debian/rules - export FSLOUTPUTTYPE=NIFTI_GZ to avoid useless warnings -- Yaroslav Halchenko Wed, 28 Feb 2018 19:13:42 -0500 nipype (1.0.0+git69-gdb2670326-1) unstable; urgency=medium * Fresh upstream post-release snapshot * debian/control - upstream requires traits 4.5.0: https://github.com/nipy/nipype/issues/2346 -- Yaroslav Halchenko Sun, 11 Feb 2018 00:10:19 -0500 nipype (0.14.0-1) unstable; urgency=medium * Fresh upstream release - dropped debian/patches/up* - should not FTBFS any longer (Closes: #848777) * debian/control - boosted debhelper to 9 - boosted debian policy to 4.1.2 - added python-packaging to build-depends and depends - downgraded cfflib to Recommends and removed from B-Depends (no longer developed etc) * debian/patches - make sphinx.ext.imgmath optionally needed -- Yaroslav Halchenko Tue, 19 Dec 2017 14:14:49 -0500 nipype (0.13.1-1) experimental; urgency=medium * Fresh upstream release - switched to use py.test instead of nosetests * debian/control - added python-click and python-configparser * Dropped debian/patches/changeset_bf-install-use-resources.diff since upstream migrated to setuptools and issue with permissions should be resolved (see https://github.com/nipy/nipype/pull/1565) * debian/rules - set LC_ALL=C.UTF-8 while building docs -- Yaroslav Halchenko Tue, 23 May 2017 10:03:04 -0400 nipype (0.12.1+git4-gbc3a0b5-1) unstable; urgency=medium * New upstream snapshot from 0.12.0-53-g356319b -- there were a number of fixes after release, without visible major new features introduced), thus snapshot was chosen * debian/control - python-{funcsigs,future,mock,prov,psutil} added to {Build-,}Depends/Recommends - boosted policy to 3.9.8 * debian/patches - refreshed - deb_robust_apidocgen added to guarantee robust doc generations even externals puke on import for some reason (like nitime atm) (Closes: #802409) * debian/rules - adjusted to find installed nipype under any -packages -- Yaroslav Halchenko Thu, 04 Aug 2016 22:07:30 -0400 nipype (0.11.0-1) unstable; urgency=medium * Fresh upstream release * debian/rules - skip test_mesh_ops since needs X and also seems to be incompatible with our mayavi2 4.3.1 (https://github.com/nipy/nipype/issues/1218) - needed to drop --with-doctest so that test_mesh_ops doesn't get imported anyhow * debian/control - recommend mayavi2 and python-xvfbwrapper as needed by some interfaces -- Yaroslav Halchenko Tue, 15 Sep 2015 19:43:29 -0400 nipype (0.10.0-2) unstable; urgency=medium [ Andreas Tille ] * Team upload. * debian/blends, debian/upstream/metadata: Moved publication data where they belong to -- Yaroslav Halchenko Tue, 28 Oct 2014 11:28:34 -0400 nipype (0.10.0-1) unstable; urgency=medium * New upstream release - provides non-minified javascript library (Closes: #737443) * debian/rules - enable doctests - switch away from pysupport * debian/control - boost policy to 3.9.6 - build-depends on recent ipython (or use ipython1x) to obtain necessary sphinx extensions - use system-wide underscore.js * debian/copyright - updated years, and used BSD-3 for the short license label * debian/patches - deb_disable_google_online_snippets -- disable all kinds of Google goodness (CSE, analytics) * debian/*lintian* - adjusted * debian/patches - changeset_e4c5ba858abf0dde5739788c0174417d21fb4c41.diff to resolve issues with context handler on older numpy's -- Yaroslav Halchenko Wed, 22 Oct 2014 21:32:32 -0400 nipype (0.9.2-1) unstable; urgency=low * New bugfix upstream release -- Yaroslav Halchenko Fri, 31 Jan 2014 15:47:16 -0500 nipype (0.9.1+git9-g8b1d21c-1) unstable; urgency=low * Post bug-fix release snapshot - should fix DataFinder bug (gh-761) introduced in 0.9 (Closes: #734591) -- Yaroslav Halchenko Wed, 08 Jan 2014 09:47:21 -0500 nipype (0.9-1) unstable; urgency=low * New upstream release * debian/control - boosted policy to 3.9.4 -- Yaroslav Halchenko Fri, 20 Dec 2013 21:48:17 -0500 nipype (0.8-1) unstable; urgency=low * New upstream release - dropping picked up previously changesets -- Yaroslav Halchenko Mon, 13 May 2013 14:47:28 -0400 nipype (0.7-1) experimental; urgency=low * New upstream release * debian/patches: - included post release fix changeset_fa7ef717b40cf175f0b6d09a3d2180cc9ddfb1e8.diff - dropped previous picked up patches * debian/watch: - adjusted for everchanging layout at github -- Yaroslav Halchenko Thu, 10 Jan 2013 11:35:28 -0500 nipype (0.6.0-2) experimental; urgency=low * Cherry-picked cc5433b3513477a3ccf6addac4b67fb4e2884d48 as 0001-fix-github-authentication.patch to resolve FTBFS while building documentation -- Yaroslav Halchenko Tue, 23 Oct 2012 11:29:33 -0400 nipype (0.6.0-1) experimental; urgency=low * New upstream release. Upload to experimental due to wheezy freeze * Boosted policy to 3.9.3 * debian/watch: adjusted for github url changes -- Yaroslav Halchenko Mon, 02 Jul 2012 09:41:29 -0400 nipype (0.5.3+git256-g493e708-1) UNRELEASED; urgency=low * New upstream snapshot from gh/master at 0.5.3-256-g493e708 -- Yaroslav Halchenko Tue, 26 Jun 2012 11:40:43 -0400 nipype (0.5.3-2) unstable; urgency=low * Make it buildable on HOMEless systems (Closes: #664944). Thanks Lucas Nussbaum for the report and Nicolas Bourdaud for the patch and Touko Korpela for the correction ;) -- Yaroslav Halchenko Mon, 18 Jun 2012 13:41:47 -0400 nipype (0.5.3-1) unstable; urgency=low * Fresh bugfix upstream release (FIX: SPM model generation ...) -- Yaroslav Halchenko Sat, 31 Mar 2012 19:44:53 -0400 nipype (0.5.2-1) unstable; urgency=low * Fresh bugfix upstream release * Added debian/source/options to ignore difference in COMMIT_INFO.txt -- Yaroslav Halchenko Wed, 14 Mar 2012 22:59:16 -0400 nipype (0.5.0-1) unstable; urgency=low * Fresh upstream release - dropped upstreamed patches up_recent_nipy_reference, deb_tollerate_exceptions_while_docbuilding * debian/copyright: updated to fit DEP-5 1.0 + copyright years * debian/python-nipype.lintian-overrides: extended list of 0-sized files -- Yaroslav Halchenko Sun, 04 Mar 2012 19:57:48 -0500 nipype (0.4.1-2) unstable; urgency=low * Cherry-picked post-release nipy-compatibility patch up_recent_nipy_reference (Closes: #638953). Thanks Barry for the reminder. -- Yaroslav Halchenko Thu, 22 Sep 2011 14:20:05 -0400 nipype (0.4.1-1) unstable; urgency=low * Fresh upstream bugrelease -- all up_* patches absorbed/dropped from the quilt queue * pyversions: requires >= 2.6 now -- Yaroslav Halchenko Sat, 16 Jul 2011 17:43:23 -0400 nipype (0.4-1) unstable; urgency=low * Fresh upstream release * debian/source -- now 3.0 (quilt) format * debian/control: - boosted policy to 3.9.2 (no changes) - versioned *depends on traits (>=4.0) and nibabel (>=1.0) - added networkx (>=1.3) into Build-Depends - added python-cfflib into Build-Depends and Depends - added graphviz and ipython into Build-Depends -- needed to build documentation and run tests * debian/changelog -- updated for DEP5 rev 174 * debian/watch -- was added to fetch tarballs from github * committed/absorbed from post-release upstream: - up_no_custom_matlab_path - up_some_no_fsl_skips - up_donot_fail_if_no_matlab - up_reset_results_when_crash - up_pipeline_clean_up_result_creation * introduced deb_tollerate_exceptions_while_docbuilding to avoid failures to build portions of documentation dependent on absent externals (e.g. FSL) * *Depends on backported python-traits4 as an alternative to python-traits >= 4.0 * Assure no executable .csv files -- Yaroslav Halchenko Fri, 15 Jul 2011 10:40:26 -0400 nipype (0.3.4-1) neurodebian; urgency=low * Added graphviz into recommends since 'dot' is also used directly by nipype (Closes: #604558) * Removed lipsia from Suggests (no relation really) * Added debian/blends with RFC822 reference to the poster * Replaced pynifti with nibabel. Removed copyright information on pynifti * Added additional build-depends (matplotlib, sympy, nibabel, nitime) * Moved networkx and nibabel into Depends since they are core components * Added suggests for pyxnat and matlab-spm8 * Added .doc-base for the documentation integration * Updated debian/README* files * Assure use of Agg matplotlib backend while docbuilding/testing -- Yaroslav Halchenko Mon, 22 Nov 2010 20:51:21 -0500 nipype (0.3.3-1) experimental; urgency=low * New upstream release * Included post release fix pushed upstream - python 2.5 compatibility: no keyword args after *args * Installing example code snippets within -doc package * Policy compliance boost to 3.9.1 -- no changes * Added 2 more lintian overrides for empty files -- Yaroslav Halchenko Thu, 16 Sep 2010 22:34:49 -0400 nipype (0.3.3~dartmouth1-1) experimental; urgency=low * New upstream snapshot prepared for the nipype workshop at Dartmouth college -- Yaroslav Halchenko Mon, 13 Sep 2010 23:44:36 -0400 nipype (0.3.2-1) unstable; urgency=low * New upstream release (bugfixes and documentation). + Issues fixed since 0.3 in FreeSurfer interface: - bugs in glmfit and concatenate - SegStats doctest + Documentation fixes/enhancements: - Developers howtos - misc docstrings -- Yaroslav Halchenko Mon, 09 Aug 2010 14:07:46 -0400 nipype (0.3-1) unstable; urgency=low * New upstream release * Debian packaging - Moving packaging under NeuroDebian umbrella - Adjusting debian/copyright for DEP5 rev 135 - Policy compliance boost to 3.9.0 -- BSD license provided verbatim - Added AFNI available from NeuroDebian repository into Suggests - Added build and runtime depends on python-traits - Added lintian overrides for empty testing .gz files -- Yaroslav Halchenko Tue, 20 Jul 2010 18:25:24 -0400 nipype (0.2-4) unstable; urgency=low * BF: removed slipped in hardcoded 2.5 as version of Python (Closes: #571500). -- Yaroslav Halchenko Thu, 25 Feb 2010 20:06:50 -0500 nipype (0.2-3) unstable; urgency=low * Moving python-networkx from Build-Depends into Build-Conflicts (versioned before 1.0~rc1) (Closes: #569401). -- Yaroslav Halchenko Thu, 11 Feb 2010 17:12:16 -0500 nipype (0.2-2) unstable; urgency=low * Policy compliance boost to 3.8.4 -- no changes were necessary. * networkx moved into Recommends: due to outdated version of networkx in Debian (see #565319), networkx becomes optional dependency -- corresponding commits cherry-picked from upstream trunk. -- Yaroslav Halchenko Fri, 05 Feb 2010 22:22:47 -0500 nipype (0.2-1) experimental; urgency=low * Initial release (Closes: #550080) * Upload to experimental since python-networkx version only in the experimental atm. -- Yaroslav Halchenko Wed, 04 Nov 2009 23:03:07 -0500