pscan-tfbs for Debian
---------------------

Name conflict with pscan package
================================

We are facing a name clash in the Free Software universe and we have to
circumvent this somehow.  In this package it is done was follows:

  1. The pscan executable
        /usr/lib/debian-med/bin/pscan

  2. The executable in the default PATH is
        /usr/bin/pscan-tfbs
     (which is a symlink to the above executale)


If you want to use pscan right from the command line just set the
PATH variable like

  export PATH=/usr/lib/debian-med/bin:$PATH

If a user creates a file

    ${HOME}/.blends

with the content

# Add Blend names here which should prepend its bin dir to PATH
debian-med

the med-config package automatically adds this PATH to the users
environment (when using bash).


JASPAR database
===============

Pscan depends on a transcription factor binding site description. The 
database "JASPAR" can be downloaded with the Debian 'getData' interface.

 -- Steffen Moeller <moeller@debian.org>  Wed, 16 May 2012 18:59:59 +0200