pymol (3.0.0+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version * Substituted module imp with importlib (patch 22) * d/u/metadata: - Changed bio.tools entry to all lowercase. - Updated refs from sf.net to GitHub * d/u/edam - new * d/copyright: Removed modules/cealign that is no longer shipping (lintian warning) * Standards-Version: 4.7.0 (routine-update) * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) * Update lintian override info format in d/python3-pymol.lintian-overrides on line 6-7. * Remove constraints unnecessary since bullseye (oldstable) (routine-update): + Build-Depends: Replace dependency on transitional package libfreetype6-dev with replacement libfreetype-dev (= 2.10.4+dfsg-1+deb11u1). -- Steffen Moeller Wed, 17 Jul 2024 18:54:40 +0200 pymol (2.5.0+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * No tab in license text (routine-update) * Use secure URI in Homepage field. * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP. * Apply multi-arch hints. + pymol-data: Add Multi-Arch: foreign. * Replace imp by importlib in wrapper script Closes: #929700 * Deactivate debian/patches/02_test-suite.patch since it is unused * There is no need to recreate debian/pymol.launch per package build time since we now stick to Python3 * Skip test importing.py * Sort testscript and print command before execution to simplify debugging of autopkgtest * Do not try to run upstream build-time testscript which was removed upstream (neither at build time nor in autopkgtest) * Exclude test /usr/share/pymol/examples/devel/importing.py which has some issue for the moment. -- Andreas Tille Wed, 15 Dec 2021 16:51:43 +0100 pymol (2.4.0+dfsg-3) unstable; urgency=medium * Team upload [ Matthias Klose ] * Enable building with pie again (Closes: #986253) [ Sebastian Ramacher ] * Replace libglew1.5-dev with libglew-dev (Closes: #995699) -- Graham Inggs Wed, 06 Oct 2021 08:18:01 +0000 pymol (2.4.0+dfsg-2) unstable; urgency=medium * debian/tests/control: Add scenes2movie to list of skipped scripts (Closes: #987963). -- Michael Banck Sat, 22 May 2021 13:26:27 +0200 pymol (2.4.0+dfsg-1) unstable; urgency=medium * New upstream release. * debian/patches/02_test-suite.patch: Refreshed. * debian/patches/22_fix_pymol_import.patch: Likewise. * debian/patches/27_fix_pymol_path_in_setup.patch: Likewise. * debian/patches/31_fix_format-security.patch: Likewise. * debian/patches/33_fix_relative_paths_in_example_scripts.patch: Likewise. * debian/patches/40_mstop_movies.patch: Likewise. * debian/patches/28_no_data_install_in_python_path.patch: Updated. * debian/patches/32_fix_spelling_lintian_warnings.patch: Likewise. * debian/patches/60_py3_test.patch: Removed, no longer needed. * debian/control (Build-Depends): Added libnetcdf-dev * debian/pymol-data.install: Remove scripts directory, no longer present upstream. -- Michael Banck Sun, 10 Jan 2021 21:46:57 +0100 pymol (2.3.0+dfsg-1) unstable; urgency=medium * Team Upload. * New upstream release. - drop patches applied upstream. - refresh patches. * Stop building the Python 2 package python-pymol (Closes: #937481). * Port the test runner to Python 3. * Update to debhelper-compat (= 12). * Update Standards-Version to 4.4.0 (no changes required). * Mark autopkgtest tests as superficial since they don't test much at present. -- Stuart Prescott Tue, 17 Sep 2019 01:34:28 +1000 pymol (2.2.0+dfsg-4) unstable; urgency=medium * Team Upload. * Ensure that arch:all package can be built separately. * Switch the pymol binary package to be arch:all following the split of the python modules off to their own packages. -- Stuart Prescott Wed, 02 Jan 2019 12:15:06 +1100 pymol (2.2.0+dfsg-3) unstable; urgency=medium * Team Upload. * Upload Qt5 GUI to unstable for wider testing. * Merge changes from previous NMU 2.2.0+dfsg-1.1. * Update Standards-Version to 4.3.0 (no changes required). * Remove unneeded Suggests: python3-tk from pymol-data. * Fix up autopkgtest tests for Qt5 GUI. -- Stuart Prescott Mon, 31 Dec 2018 17:22:59 +1100 pymol (2.2.0+dfsg-2) experimental; urgency=medium * Team Upload. * Split package for Python 2 and Python 3 modules (Closes: #897431). * Use Qt5 GUI. * Update Standards-Version to 4.2.1 (no changes required). -- Stuart Prescott Fri, 02 Nov 2018 13:10:34 +1100 pymol (2.2.0+dfsg-1.1) unstable; urgency=medium * Team upload * Fix for FTBFS with glew 2.1, needed for glew/hdf5 transitions. Closes: #915112 -- Alastair McKinstry Fri, 07 Dec 2018 12:29:01 +0000 pymol (2.2.0+dfsg-1) unstable; urgency=medium [ Stuart Prescott ] * Team upload. [ Michael Banck ] * New upstream release. * debian/watch: Update to github. * debian/patches/32_fix_spelling_lintian_warnings.patch: Refreshed. * debian/control (Build-Depends): Added libglm-dev. -- Stuart Prescott Fri, 02 Nov 2018 11:43:02 +1100 pymol (2.1.0+dfsg-3) unstable; urgency=medium * Team upload. * Force use of Tk GUI to prevent crashes with Qt GUI (Closes: #902348). -- Stuart Prescott Fri, 29 Jun 2018 00:30:41 +1000 pymol (2.1.0+dfsg-2) unstable; urgency=medium * Team upload. * Fix tests so that they do not loop forever (Closes: #897191). * Whitespace cleanup of changelog to shut up lintian. * Don't run the tests at build time if nocheck is set. * Add symlink to examples in /usr/share/doc/pymol. * Update build system to pybuild and simplify d/rules. -- Stuart Prescott Thu, 03 May 2018 01:46:13 +1000 pymol (2.1.0+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version * Standards-Version: 4.1.4 * debhelper 11 -- Andreas Tille Fri, 27 Apr 2018 09:41:57 +0200 pymol (1.8.4.0+dfsg-1) unstable; urgency=medium * Team upload * New upstream version -- Andreas Tille Thu, 20 Oct 2016 17:33:21 +0200 pymol (1.8.2.1+dfsg-1.2) unstable; urgency=medium * Non-maintainer upload. * Avoid bad installation of the data files into pymol binary (Closes: #836005) -- Gianfranco Costamagna Wed, 31 Aug 2016 15:28:27 +0200 pymol (1.8.2.1+dfsg-1.1) unstable; urgency=medium * Non-maintainer upload. * Fix FTBFS with dpkg-buildpackage -A (Closes: #835224) -- Gianfranco Costamagna Mon, 29 Aug 2016 10:47:59 +0200 pymol (1.8.2.1+dfsg-1) unstable; urgency=medium [ Tatiana Malygina ] * Team upload. * New upstream version Closes: #777619 * temporary commented patches 22_fix_pymol_import.patch and 31_fix_format-security.patch, fixed 32_fix_spelling_lintian_warnings.patch * updated 31_fix_format-security.patch * updated 32_fix_spelling_lintian_warnings.patch * add smoke test to check if various pymol scripts end up with 'PyMOL: normal program termination.' message, add debian/README.test, mention them in debian/pymol.docs. * add debian/pymol.lintian-overrides to override spelling-error-in-binary (see comment in debian/pymol.lintian-overrides for details) * add libpng12-0 (= 1.2.50-2+deb8u2) dependency to debian/control * update to debhelper 9, add hardening. Since pymol produces shared libraries, not executable, -pie compiler/linker options are turned off. This also eliminates hardening-no-bindnow lintian warnings. * updated 22_fix_pymol_import.patch * fix lintian spelling warnings * run cme fix dpkg-control * add simple test * fix executable-not-elf-or-script lintian warning - by adding override_dh_fixperms to debian/rules * New upstream release * Move data files to pymol-data package (except examples). Closes: #506202 * fixed debian/pymol.install to copy required files to usr/lib dir (this became broken when package was split to pymol and pymol-data) * fixed debian/pymol.lintian-overrides to handle architecture-dependent library name * install examples/ and tests/ directories with pymol-data to make them available in manual tests * add more strict rules in debian/tests/call-pymol-scripts - to fail when certain error patterns present in pymol output (and coloring for output) * small fix in debian/tests/call-pymol-scripts - don't use symlinks any more * add patch to fix relative paths in example scripts * fix typos, fixed debian/pymol.lintian-overrides * add python-opengl as a dependency to pymol-data (this package is used in several example scripts) * fixes in debian/tests/call-pymol-scripts to allow skip some scripts invocation * update in debian/patches/33_fix_relative_paths_in_example_scripts.patch * debian/pymol-data.install: now install only correct scripts from examples/ * fixes in debian/tests/control: now test only correct scripts (all skipped example scripts will be described in README.Debian). * updated description in debian/README.test and debian/README.Debian, updated debian/pymol-data.install, add python-opengl dependency to debian/tests/control * add patch to use fetch instead of load in scripts when necessary, add several examples to debian/pymol.data.install, update debian/README.Debian and debian/tests/control * cleaned up debian/examples: examples are located in /usr/share/pymol * fix package-contains-empty-directory usr/share/chempy/ lintian warning, cleaned up debian/tests/control * add keywords and basic localization to Russian in debian/pymol.desktop * mention github repo with examples from pymol wiki in debian/README.test * debian/copyright: add UIUC Open Source license, fix in BSD-3-clause (used as a license for 2 different copyright holders, one of them was mentioned in text) * add TODO remark * add font licenses for layer1/Font* files [ Andreas Tille ] * Moved packaging from SVN to Git * Move debian/upstream to debian/upstream/metadata * DEP5 copyright * Remove menu file -- Tatiana Malygina Wed, 10 Aug 2016 21:03:01 +0300 pymol (1.7.2.1-2) unstable; urgency=medium * debian/patches/21_fix_png_batch_mode.patch: Removed, broke functionality. -- Michael Banck Sat, 13 Jun 2015 15:38:14 +0200 pymol (1.7.2.1-1) unstable; urgency=low * New upstream point release. * debian/patches/31_fix_format-security.patch: New patch, fixes FTBFS bug with -Werror=format-security (closes: #759860). -- Michael Banck Sun, 14 Sep 2014 16:35:14 +0200 pymol (1.7.1.3-1) unstable; urgency=low * New upstream point release. * debian/patches/30_pymol_data_path.patch: Removed: applied upstream. -- Michael Banck Wed, 21 May 2014 17:54:04 +0200 pymol (1.7.0.0-1) unstable; urgency=low * New upstream release. * debian/patches/30_pymol_data_path.patch: New patch, uses PYMOL_DATA instead of PYMOL_PATH environment variable for data file location. -- Michael Banck Mon, 20 Jan 2014 17:43:21 +0100 pymol (1.6.0.0-1.1) unstable; urgency=low * Non-maintainer upload. * Replaced the obsolete tk8.4-dev by tk-dev in build dependencies. -- Sergei Golovan Thu, 03 Oct 2013 20:45:06 +0400 pymol (1.6.0.0-1) unstable; urgency=low * New upstream prelease. - Fixes session saving/loading (closes: #668586). [ Michael Banck ] * debian/patches/11_fix__cmd_import.patch: Removed, no longer needed. * debian/patches/26_subversion_updates.patch: Likewise. * debian/pymol.install: Install data and scripts directories under /usr/share/pymol, as intended by upstream. * debian/pymol.launch.in: Updated for new data path location. * debian/patches/05_examples_data_path.patch: Removed, no longer needed. * debian/patches/09_chempy_data_path.patch: Likewise. * debian/patches/13_activate_vmd_plugin.patch: Likewise. * debian/patches/17_cmyk_png_data_path.patch: Likewise. * debian/patches/19_blosum_matrix_path.patch: Likewise. * debian/patches/20_output_license_terms.patch: Likewise. * debian/patches/25_ignore_setup_clean_errors.patch: Likewise. * debian/rules (override_dh_auto_clean): Do not abort on failure and remove * redundant call to setup.py. * debian/patches/22_fix_pymol_import.patch: Change the value of $PYMOL_PATH to the one found by find_module('pymol'). * debian/patches/28_no_data_install_in_python_path.patch: New patch, skips installation of the data (and examples, test) directories into the pymol path. * debian/patches/29_fix_path_to_splash.patch: New patch, changes search path for splash image from $PYMOL_PATH to $PYMOL_DATA. * debian/patches/series: Disable 24_autodock_plugin.patch for now, as it does work currently. * debian/control (Standards-Version): Bumped to 3.9.4. [ Daniel Leidert ] * debian/control (Uploaders): Removed myself. (Depends): Added python-numpy (LP: #1076104). (Suggests): Added chemical-mime-data. * debian/gnome-pymol.desktop: Dropped unused file. * debian/pymol.desktop (MimeType, Exec): Additions (LP: #1087265). * debian/pymol.launch.in: Environmental path variables (LP: #925445). * debian/upstream: Minor additions. -- Debichem Team Thu, 08 Aug 2013 20:32:10 +0200 pymol (1.5.0.1-2) unstable; urgency=low * debian/patches/26_subversion_updates.patch: New patch, includes the fixes from subversion since 1.5.0.1 up to revision 3996. * debian/upstream: New file. * debian/pymolRef.tex: Updated with latest version from http://www.pymolwiki.org/index.php/CheatSheet. -- Michael Banck Wed, 02 May 2012 18:11:37 +0200 pymol (1.5.0.1-1) experimental; urgency=low * New upstream release. * debian/patches/patches/13_activate_vmd_plugin.patch: Refreshed. * debian/patches/19_blosum_matrix_path.patch: Refreshed. * debian/patches/23_bts576210_FTBFS_ia64.patch: Removed, no longer needed. * debian/patches/25_ignore_setup_clean_errors.patch: New patch, includes a failure if setup.py is run with "clean" as argument. * debian/rules (override_dh_clean): Remove some new leftover files. * debian/patches/patches/13_activate_vmd_plugin.patch: Revert some changes since 1.4.1 which make the molfile plugin fail to build. -- Michael Banck Sun, 19 Feb 2012 21:45:17 +0100 pymol (1.4.1-3) unstable; urgency=low * debian/control (Build-Depends): Dropped dpatch in favour of source format 3.0 (quilt). * debian/pymol.pyremove: Added. Remove web/*__init__.py to fix file conflict (closes: #650756). * debian/rules: Remove dpatch addon call. Disable verbose output. (override_dh_clean): Don't remove test/pymol-test; quilt will do. * debian/README.source: Dropped obsolete file. * debian/source/lintian-overrides: Ditto. * debian/patches/02_test-suite.dpatch: Renamed to debian/patches/02_test-suite.patch. * debian/patches/03_povray.dpatch: Renamed to debian/patches/03_povray.patch. * debian/patches/05_examples_data_path.dpatch: Renamed to debian/patches/05_examples_data_path.patch. * debian/patches/09_chempy_data_path.dpatch: Renamed to debian/patches/09_chempy_data_path.patch. * debian/patches/11_fix__cmd_import.dpatch: Renamed to debian/patches/11_fix__cmd_import.patch. * debian/patches/13_activate_vmd_plugin.dpatch: Renamed to debian/patches/13_activate_vmd_plugin.patch. * debian/patches/17_cmyk_png_data_path.dpatch: Renamed to debian/patches/17_cmyk_png_data_path.patch. * debian/patches/19_blosum_matrix_path.dpatch: Renamed to debian/patches/19_blosum_matrix_path.patch. * debian/patches/20_output_license_terms.dpatch: Renamed to debian/patches/20_output_license_terms.patch. * debian/patches/21_fix_png_batch_mode.dpatch: Renamed to debian/patches/21_fix_png_batch_mode.patch. * debian/patches/22_fix_pymol_import.dpatch: Renamed to debian/patches/22_fix_pymol_import.patch. * debian/patches/23_bts576210_FTBFS_ia64.dpatch: Renamed to debian/patches/23_bts576210_FTBFS_ia64.patch. * debian/patches/24_autodock_plugin.dpatch: Renamed to debian/patches/24_autodock_plugin.patch. * debian/patches/00list: Renamed to debian/patches/series and adjusted. -- Daniel Leidert (dale) Sun, 04 Dec 2011 22:53:06 +0100 pymol (1.4.1-2) unstable; urgency=low * For whatever reason (dh compat level or dh_python2 usage) dependencies for all .so files are now calculated (closes: #611436). * debian/compat: Increased dh compatibility level to 7. * debian/control: Added X-Python-Version and XB-Python-Version field. (Standards-Version): Bumped to 3.9.2. (Build-Depends): Added dpatch version for debhelper addon. spelling-error-in-description (Vcs-Browser): Point to real location. (Description): Fixed spelling-error-in-description. * debian/pymol.docs: Added. * debian/pymol.manpages: Ditto. * debian/rules: Rewritten for debhelper 7. Make use of python2 and dpatch debhelper addons. Install shader files (closes: #644394). * debian/source/format: Added for source format 3.0. * debian/source/lintian-overrides: Temporarily added as long as we stay with dpatch here. -- Daniel Leidert (dale) Wed, 30 Nov 2011 21:51:42 +0100 pymol (1.4.1-1) unstable; urgency=low * New upstream release. [ Daniel Leidert ] * debian/watch: Adjusted to catch the re-introduced tarball download. -- Michael Banck Sat, 27 Aug 2011 19:17:05 +0200 pymol (1.4~beta1-1) experimental; urgency=low [ Michael Banck ] * New upstream beta release. * debian/patches/13_activate_vmd_plugin: Refreshed. * debian/patches/18_enable_gl_shaders.dpatch: Removed, no longer needed. * debian/control (Build-Depends): Added libglew1.5-dev. -- Michael Banck Sun, 17 Apr 2011 00:26:31 +0200 pymol (1.3r2-1) unstable; urgency=low * New upstream release. * debian/patches/13_activate_vmd_plugin: Removed, no longer needed. * debian/patches/19_blosum_matrix_path.dpatch: Refreshed. * debian/patches/24_autodock_plugin.dpatch: New patch, includes the autodock plugin from Daniel Seeliger. * debian/patches/00list: Adjusted. * debian/control (Standards-Version): Bumped to 3.9.1. * debian/control (Depends): Added ${misc:Depends}. -- Michael Banck Sat, 16 Apr 2011 23:12:01 +0200 pymol (1.2r2-1.1) unstable; urgency=low * Non-maintainer upload. * debian/patches/23_bts576210_FTBFS_ia64.dpatch - fix a FTBFS on ia64, working aroung a bug in GCC; thanks to Jakub Wilk for the report and patch; Closes: #576210 -- Sandro Tosi Mon, 10 May 2010 09:34:51 +0200 pymol (1.2r2-1) unstable; urgency=low * New upstream release. This upload is dedicated to the pymol founder and lead developer Warren DeLano, who passed away on November 3rd, 2009. [ Daniel Leidert (dale) ] * debian/patches/18_enable_gl_shaders.dpatch: Refreshed. [ Michael Banck ] * debian/patches/21_fix_png_batch_mode.dpatch: New patch, fixes PNG generation in batch mode, by Vincent Fourmond (closes: #560412). * debian/patches/22_fix_pymol_import.dpatch: New patch, fixes importing of pymol module from python (closes: #556878). -- Michael Banck Sun, 27 Dec 2009 18:55:26 +0100 pymol (1.2r1-3) unstable; urgency=low * debian/pymol.launch.in: Don't execute the package (closes: #550721). Otherwise package execution fails with python 2.6 and 3. -- Daniel Leidert (dale) Wed, 04 Nov 2009 00:17:15 +0100 pymol (1.2r1-2) unstable; urgency=low * debian/control (Build-Depends): Added python for python.mk. * debian/pymol.launch.in: Replace $* with $@ and add a construct to replace the test (closes: #549268). * debian/rules: Include python.mk. (install): Use --install-layout=deb via py_setup_install_args (closes: #547871). * debian/patches/02_test-suite.dpatch: Adjusted. - test/pymol-test: Include /usr/lib/pythonX.Y/dist-packages too. * debian/patches/20_output_license_terms.dpatch: Added. - Show the Debian package copyright file when using 'Output License Terms', which fully reproduces the LICENSE file. * debian/patches/00list: Adjusted. -- Daniel Leidert (dale) Sat, 03 Oct 2009 01:04:21 +0200 pymol (1.2r1-1) unstable; urgency=low * New upstream release. [ Michael Banck ] * debian/patches/06_remove_shebang.dpatch: Removed, applied upstream. * debian/patches/13_activate_vmd_plugin.dpatch: Updated. * debian/patches/14_script_not_executable.dpatch: Removed, applied upstream. * debian/patches/16_pymem_del.dpatch: Likewise. * debian/patches/17_cmyk_png_data_path.dpatch: Updated. * debian/pymol.launch.in: Add quotes around $* to not fail on filenames with whitespace in them (closes: #506967). * debian/rules (clean): Removed bashism (closes: #535410). * debian/control (Homepage): Updated. * debian/control (Uploaders): Removed Li Daobing. * debian/patches/18_enable_gl_shaders.dpatch: New patch, enable OpenGL shaders, taken from upstream. * debian/pymol.launch.in: Do not add $* to command line if empty, avoiding a traceback on startup. * debian/rules (GCC43_ICES_HERE): Removed. * debian/control (Build-Depends): Removed g++-4.2 on arm and armel (closes: #533794). * debian/control (Build-Depends): Replaced glutg3-dev with freeglut3-dev (closes: #543702). [ Daniel Leidert ] * debian/control: Added DM-Upload-Allowed field. (Standards-Version): Bumped to 3.8.3. (Vcs-Svn): Fixed vcs-field-uses-not-recommended-uri-format. (Description): Fixed typo (thanks to lintian). * debian/pymol-32.xpm: Renamed to debian/pymol.xpm. * debian/pymol.applications, debian/gnome-pymol.keys, debian/gnome-pymol.mime: Dropped. This is for GNOME<=2.4. * debian/pymol.dirs, debian/pymol.install: Added for debhelper-based build system. * debian/pymol.doc-base: Added to register reference card. * debian/pymol.menu (icon): Fixed after rename. * debian/pymol.launch.in: Fixed PYMOL_PATH (closes: #529417). Make this self-detecting (closes: #516040). * debian/rules: Reworked to be more debhelper-like and clean. Permission fixes have been dropped (fixed upstream). * debian/README.source: Added to comply to policy. * debian/patches/04_Rules.make.dpatch: Dropped. * debian/patches/05_examples_data_path.dpatch: Adjusted to use PYMOL_DATA. * debian/patches/19_blosum_matrix_path.dpatch: Added. - modules/pymol/fitting.py: Search for the matrices in the correct path (closes: #511810). -- Michael Banck Sat, 19 Sep 2009 13:43:04 +0200 pymol (1.1-1) unstable; urgency=low * New upstream release. [ Daniel Leidert (dale) ] * debian/control (Uploaders): Added myself. * debian/pymol.1: Added basic man-page for pymol (closes: #148399). * debian/rules (binary-arch): Install man-page for pymol. * debian/patches/11_fix__cmd_import.dpatch: Added a short description based on the changelog entry to satisfy lintian. [ Michael Banck ] * debian/patches/17_cmyk_png_data_path.dpatch: Fix the location lookup for cmyk.png (closes: #490067). * debian/pymolRef.tex: New file, taken from pymol community wiki http://www.pymolwiki.org. * debian/copyright: Add GPLv2 notice for debian/pymolRef.tex. * debian/control (Build-Depends): Added texlive-latex-base. Replaced python-numeric with python-numpy. * debian/rules (build): Run pdflatex to create reference card from debian/pymolRef.tex. * (install): Copy it to $(BUILD_DIR)/usr/share/doc/pymol/pymol-ref-card.pdf. * (clean): Remove pdflatex created files. * debian/patches/12_align_matrix.dpatch: Removed, applied upstream. * debian/patches/15_fix_scripting_mode.dpatch: Likewise. * debian/patches/13_activate_vmd_plugin.dpatch: Refreshed. * debian/rules (install): Create $(BUILD_DIR)/usr/share/doc/pymol. * debian/control (Description): Updated. * debian/README.Debian: Removed entry from 19 May 2002. -- Michael Banck Wed, 23 Jul 2008 03:42:15 +0200 pymol (1.1~beta3-3) unstable; urgency=low [ LI Daobing ] * debian/pymol.desktop: fix lintian info desktop-entry-contains-encoding-key. [ Michael Banck ] * debian/control (Build-Depends): Added g++-4.2 on arm, armel. * debian/rules: Use g++-4.2 on arm, armel; by Adeodato Simo; closes: #478034. -- Michael Banck Sat, 26 Apr 2008 16:07:33 +0200 pymol (1.1~beta3-2) unstable; urgency=low * debian/patches/16_pymem_del.dpatch: Fix usage of different memory APIs; by Barry deFreese; closes: #468989. -- Michael Banck Sun, 16 Mar 2008 14:26:06 +0100 pymol (1.1~beta3-1) unstable; urgency=low * New upstream prerelease. [ Michael Banck ] * debian/patches/15_fix_scripting_mode.dpatch: Fix the scripting (command-line) mode; by Anders Norgaard; closes: #459644. [ LI Daobing ] * debian/control: - add me to uploaders. - bump standards version to 3.7.3, nothing need change. * debian/rules: remove build directory and other two files in clean. (Closes: #442706) * add a new 32x32 xpm icon: - debian/pymol-32.xpm: added. (resize from debian/pymol.xpm) - debian/rules: install pymol-32.xpm. - debian/pymol.menu: use 32x32 xpm icon. * debian/rules: don't install empty directory. * fix lintian warning: script-not-executable - debian/patches/14_script_not_executable.dpatch: added. - debian/patches/00list: updated. -- Michael Banck Fri, 15 Feb 2008 20:38:42 +0100 pymol (1.0r2-1) unstable; urgency=low * New upstream release. [ Daniel Leidert ] * debian/control: Added Homepage and XS-Vcs-* fields. Added get-orig-source target to retrieve source from SVN. (Build-Depends): Raised debhelper compat level. * debian/pymol.menu (section): Menu section transition. * debian/rules: DH_COMPAT is obsolete. Better use debian/compat. Raised level to debhelper 5. * debian/watch: Fixed. Upstream doesn't provide tarballs anymore, so we check their SVN. [ Michael Banck ] * debian/patches/13_activate_vmd_plugin.dpatch: Build the VMD plugin, by Martin Hoefling. * debian/control (Maintainer): Change to Debichem Team. -- Michael Banck Fri, 12 Oct 2007 15:47:49 +0200 pymol (1.0-1) unstable; urgency=low * New upstream release. [ Daniel Leidert ] * debian/watch: Added. [ LI Daobing ] * debian/rules: lintian doesn't like "-$(MAKE) clean", see bug#325372 [ Michael Banck ] * debian/README.Debian: Remove link to obsolete manual and mention http://www.pymolwiki.org/ as documenation source. * debian/rules (dh_installchangelogs): CHANGES got renamed to ChangeLog. * debian/rules (dh_installdocs): Include AUTHORS. * debian/patches/05_examples_data_path.dpatch: Updated. * debian/pymol.launch.in: Remove quotes around $*; closes: #409188. * debian/rules (clean): Don't fail if Makefile is not present. * debian/patches/12_align_matrix.dpatch: New patch to fix patch for align command. Based on a patch by Charles Plessy and further input by Thomas Gaillard; closes: #385550. -- Michael Banck Thu, 5 Jul 2007 13:13:00 +0200 pymol (0.98+0.99rc8-1) unstable; urgency=low * New upstream release candidate. [ Michael Banck ] * debian/rules (install): Install builder ring bitmaps into /usr/share/pymol/pmg_tk/bitmaps/builder; closes: #422229. * debian/patches/09_chempy_data_path.dpatch: Updated. * debian/patches/05_examples_data_path.dpatch: Likewise. * debian/patches/09_chempy_data_path.dpatch: Updated to fix the pathname for the mutagenesis wizard; closes: #410108. [ LI Daobing ] * debian/pymol.desktop: fix warning for desktop-file-validate. -- Michael Banck Tue, 8 May 2007 18:02:59 +0200 pymol (0.98+0.99rc6-2) unstable; urgency=low * debian/control (Recommends): Added apbs. * Sync with Ubuntu; closes: #379508, #378825. * Acknowledge NMU; closes: #380910. -- Michael Banck Tue, 26 Sep 2006 00:08:41 +0200 pymol (0.98+0.99rc6-1.1) unstable; urgency=low * Non-maintainer upload. * Update packate to the last python policy (Closes: 380910): + use dh_pysupport. + add 11_fix__cmd_import.dpatch to fix an import that does not behaves well. + adapt the wrapper to the new path's. * Bump Standards-Version to 3.7.2. * Bump DH_COMPAT to 4. * Fix more files that have wrong executable bits set. -- Pierre Habouzit Wed, 30 Aug 2006 11:09:00 +0200 pymol (0.98+0.99rc6-1ubuntu1) edgy; urgency=low * Re-merge with Debian -- Barry deFreese Sun, 23 Jul 2006 17:39:15 -0400 pymol (0.98+0.99rc6-1) unstable; urgency=low * New upstream release candidate. * debian/patches/02_test-suite.dpatch: Resync. * debian/patches/03_povray.dpatch: Likewise. * debian/patches/05_examples_data_path.dpatch: Likewise. * debian/patches/09_chempy_data_path.dpatch: Likewise. * debian/control (Build-Depends): Added libfreetype6-dev. -- Michael Banck Fri, 30 Jun 2006 02:05:00 +0200 pymol (0.98-1ubuntu2) dapper; urgency=low * Merged existing desktop files and updated to current freedestkop standards. Closes Ubuntu #36435 -- Zygmunt Krynicki Sat, 25 Mar 2006 01:22:38 +0100 pymol (0.98-1ubuntu1) breezy; urgency=low * Resynchronise with Debian. * Sponsored for Barry DeFreese (Closes: Ubuntu #12487) -- Stephan Hermann Sun, 24 Jul 2005 11:43:59 +0200 pymol (0.98-1ubuntu2) dapper; urgency=low * Merged existing desktop files and updated to current freedestkop standards. Closes Ubuntu #36435 -- Zygmunt Krynicki Sat, 25 Mar 2006 01:22:38 +0100 pymol (0.98-1ubuntu1) breezy; urgency=low * Resynchronise with Debian. * Sponsored for Barry DeFreese (Closes: Ubuntu #12487) -- Stephan Hermann Sun, 24 Jul 2005 11:43:59 +0200 pymol (0.98-1) unstable; urgency=low * The 'Fixing Ubunt^W^WPreparing for Python Transition' Release. * New upstream release. * debian/patches/03_povray.dpatch: Updated. * debian/rules (install): Create application-registry directory. * debian/patches/02_test-suite.dpatch (pymol-test): Do not hardcode python version. * debian/pymol.launch: Renamed to ... * debian/pymol.launch.in: ... this, and generalize occurances of python versions to @PYTHON_VERSION@. * debian/rules (debian/pymol.launch): New rule, processing debian/pymol.launch.in. * debian/rules (build-stamp): Depend on debian/pymol.launch. -- Michael Banck Sun, 3 Jul 2005 12:56:15 +0200 pymol (0.97-3) unstable; urgency=low * debian/control (Depends): Use ${python:Depends} instead of exlicitely specifying the current default python version. * (Build-Depends): Use python-dev and python-numeric rather than specific versions. * debian/pymol.dirs: Removed. * debian/rules (install): Grouped creation of directories together and create missing directories under $(BUILD_DIR)/usr/share as well as $(BUILD_DIR)/usr/bin. -- Michael Banck Tue, 5 Apr 2005 13:14:24 +0200 pymol (0.97-2) unstable; urgency=low * debian/patches/09_chempy_data_path.dpatch: Include relevant chempy changes from the old 01_data_path.dpatch and adopt it slightly to use CHEMPY_PATH. Reported by Christoph Scheurer. * debian/pymol.launch: Use $CHEMPY_PATH instead of $CHEMPY_DATA_PATH. -- Michael Banck Sat, 8 Jan 2005 15:50:45 +0100 pymol (0.97-1) unstable; urgency=low * New upstream release. * debian/patches/10_png_includes: Dropped, included upstream. * debian/patches/00list (10_png_includes.dpatch): Removed. * debian/control (Build-Depends): Added python; closes: #261040. * debian/pymol.launch (PYMOL_PATH): New environment variable to work around upstream breakage for the time being. -- Michael Banck Fri, 6 Aug 2004 03:02:32 +0200 pymol (0.95-1) unstable; urgency=low * New upstream release. * (layer0/MyPNG.c): Reorder #includes in MyPNG.c. (10_png_includes.dpatch) * debian/patches/00list (10_png_includes.dpatch): Added. * debian/control (Build-Depends): Drop gcc-2.95 again, #229080 does not show up anymore with th current gcc. * debian/rules (CC): Removed. -- Michael Banck Wed, 7 Apr 2004 21:34:02 +0200 pymol (0.93-5) unstable; urgency=low * debian/control (Build-Depends): Really only depend on gcc-2.95 on ia64 and hppa; closes: #235709. * debian/rules (PYMOL_PATH): New variable, to make sure the test- suite is able to find its data files. -- Michael Banck Tue, 2 Mar 2004 15:20:32 +0100 pymol (0.93-4) unstable; urgency=low * debian/rules: Only set CC=2.95 if not building for ia64 or hppa. * debian/control: Do not Build-Depend on gcc-2.95 on ia64 and hppa; closes: #235658. -- Michael Banck Mon, 1 Mar 2004 23:04:21 +0100 pymol (0.93-3) unstable; urgency=low * debian/control (Build-Depends): Revert to gcc-2.95 to evade segmen- tation faults when rendering lines with binaries built with gcc-3.x. * debian/rules: Export CC=gcc-2.95; closes: #229080. -- Michael Banck Sun, 22 Feb 2004 11:12:13 +0100 pymol (0.93-2) unstable; urgency=low * Fix environment-variable handling in modules/pymol/wizards/ mutagenesis.py; closes: #225590. (09_chempy_data_path.dpatch) * 05_examples_data_path.dpatch: Updated to find 1hpv.pdb for the 'Scripted Animation' demo. -- Michael Banck Sat, 3 Jan 2004 23:08:13 +0100 pymol (0.93-1) unstable; urgency=low * New upstream release. * debian/patches/00list (01_data_path.dpatch): Dropped, fixed upstream. (07_setup.py._opengl-libs.dpatch): Likewise. (08_setup.py_missing_file.dpatch): Likewise. * debian/pymol.launch: Changed $PYMOL_DATA_PATH to $PYMOL_DATA, in order to follow upstream. -- Michael Banck Sun, 2 Nov 2003 12:06:10 +0100 pymol (0.90-2) unstable; urgency=low * 01_data_path.dpatch: - Factor out examples/-directory into 05_examples_data_path.dpatch. - Factor out patch for modules/chempy/cex.py into 06_remove_shebang.dpatch. * debian/pymol.launch: Pass command-line arguments to pymol through the wrapper script, thanks to Gabor Tusnady for reporting this. * setup.py (pyogl_libs): Added "GL","GLU","glut" and "png"; closes: #214026. (07_setup.py._opengl-libs.dpatch) * (setup Extension): Added layer0/MemoryCache.c. (08_setup.py_missing_file.dpatch) -- Michael Banck Sat, 4 Oct 2003 21:54:58 +0200 pymol (0.90-1) unstable; urgency=low * 02_test-suite.dpatch: Updated for python2.3, thanks to Matt Kraai; closes: #207706, #207711 * 04_Rules.make.dpatch: Activated * debian/rules: Remove Rules.make linking/removing, handled by dpatch now -- Michael Banck Mon, 1 Sep 2003 19:16:02 +0200 pymol (0.90-0.1) unstable; urgency=low * NMU * New upstream release. * Update for python2.3 (closes: #206302). -- Matthias Klose Thu, 28 Aug 2003 21:04:16 +0200 pymol (0.88-1) unstable; urgency=low * New upstream release; closes: #196159 * debian/pymol.menu: Moved menu entry from Math to Science section * modules/pymol/povray.py: Fixed command-line again * debian/control, debian/rules: Switch to dpatch -- Michael Banck Mon, 16 Jun 2003 18:16:41 +0200 pymol (0.86-3) unstable; urgency=low * renamed said hacked pymol script to test/pymol-test * debian/rules: make test/pymol-test executable * modules/chempy/cex.py: Removed !# from top, this is no script as far as pymol is concerned -- Michael Banck Mon, 13 Jan 2003 17:36:24 +0100 pymol (0.86-2) unstable; urgency=low * test/run: Fixed test-suite to import the pymol modules under debian/pymol by providing a hacked pymol script in test/ -- Michael Banck Mon, 13 Jan 2003 14:36:48 +0100 pymol (0.86-1) unstable; urgency=low * New upstream release; closes: #175881 - Patch for pmw got applied upstream; closes: #160584 - Hacked around $PYMOL_PATH once more in various places - Followed Upstream's layout of the data a bit by using /usr/share/pymol and /usr/share/chempy along with their subdirectories respectively * test/run: display the diff in case the test failed * debian/rules: Use setup.py in build: and clean: target now * debian/control: Build with libpng12-0-dev now -- Michael Banck Mon, 13 Jan 2003 01:16:35 +0100 pymol (0.82-2) unstable; urgency=low * Switched to python-2.2; closes: #158931 * modules/pymol/povray.py: Changed PovRay-command from x-povray to povray; closes: #151190 * debian/control: Bumped Standards-Version to 3.5.6.1 -- Michael Banck Mon, 16 Sep 2002 01:11:57 +0200 pymol (0.82-1) unstable; urgency=low * New upstream release * Included pymol.xpm icon for menu-system, fixing the menu entry; closes: #148400 * debian/control: Removed the Suggestion of pymol-doc for now as the manual is out of date, documented its website in README.Debian instead. Still no manpage, sorry * Included splash.png in /usr/share/pymol and changed modules/pymol/invocation.py accordingly * debian/rules: Triggered the test-run * modules/pmg_tk/Demo.py: Changed all cmd.load to look for the .pdb-files in /usr/share/pymol/demo and installed those files there; closes: #148153, #150070 * debian/control: Trimmed Build-Depends: -- Michael Banck Fri, 21 Jun 2002 00:45:18 +0200 pymol (0.80-3) unstable; urgency=low * Actually compile shared libraries with -fPIC this time -- Michael Banck Sat, 25 May 2002 13:08:19 +0200 pymol (0.80-2) unstable; urgency=low * Suggests: pymol-doc now * Build shared libraries with -fPIC; closes: #148118 -- Michael Banck Sat, 25 May 2002 09:35:51 +0200 pymol (0.80-1) unstable; urgency=low * Initial Release; closes: #146024 * Moved data files to /usr/share/pymol * Removed need for environment variables during execution, hardcoding the paths for the moment * Added a link to undocumented.1 for pymol.1 for the moment -- Michael Banck Sun, 19 May 2002 15:56:00 +0200