python-biom-format (2.1.15.2-3) unstable; urgency=medium * Team Upload. * Pull upstream patch to fix FTBFS (Closes: #1044074) -- Nilesh Patra Mon, 05 Feb 2024 00:46:33 +0530 python-biom-format (2.1.15.2-2) unstable; urgency=medium * Drop python3-future from Build-Depends Closes: #1059948 * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) -- Andreas Tille Fri, 05 Jan 2024 21:56:52 +0100 python-biom-format (2.1.15.2-1) unstable; urgency=medium * New upstream version Closes: #1056323 * Standards-Version: 4.6.2 (routine-update) * d/control: remove Breack+Replaces on obsolete package. * d/control: add myself to uploaders. * d/control: build depends on python3-nympydoc. * Patches: - ignore_local_dist-packages.patch: unfuzz. - enable_sloppy_sphinx_build.patch: remove; applied upstream. - fix_future_import.patch: refresh. - sphinx.ext.pngmath.patch: remove; applied upstream. -- Étienne Mollier Mon, 19 Jun 2023 23:18:50 +0200 python-biom-format (2.1.12-3) unstable; urgency=medium * Team upload. * d/control: remove python3-nose (Closes: #1018464) -- Mohammed Bilal Sat, 03 Dec 2022 23:45:03 +0530 python-biom-format (2.1.12-2) unstable; urgency=medium * Fix watch file * Standards-Version: 4.6.1 (routine-update) -- Andreas Tille Wed, 30 Nov 2022 20:54:15 +0100 python-biom-format (2.1.12-1) unstable; urgency=medium * Team upload. * New upstream version 2.1.12 * Drop d/p/{fix_test.patch,ignore_failing_hdf5_test.patch, ignore_one_failing_hdf5_test.patch,python3.10.patch, sphinx_add_javascript.patch} Refreshed other patches (Closes: #1013713) -- Nilesh Patra Sun, 26 Jun 2022 17:35:00 +0530 python-biom-format (2.1.10-4) unstable; urgency=medium * Team upload * The h5py issue appears to be solved, so enable builds on all architectures again to fix lefse autopkgtest on s390x -- Graham Inggs Mon, 11 Apr 2022 19:47:14 +0000 python-biom-format (2.1.10-3) unstable; urgency=medium * Team upload [ Stefano Rivera ] * Patch: Python 3.10 support. (Closes: #1000423) [ Andreas Tille ] * Ignore one failing test -- Graham Inggs Fri, 03 Dec 2021 16:21:56 +0000 python-biom-format (2.1.10-2) unstable; urgency=medium * Fix watchfile to detect new versions on github * Standards-Version: 4.6.0 (routine-update) * Apply multi-arch hints. + python-biom-format-doc: Add Multi-Arch: foreign. * add_javascript() was deprecated in v1.8 and removed in v4.0. add_js_file() is a successor of the API Closes: #997377 * Ignore failing hdf5 test -- Andreas Tille Mon, 01 Nov 2021 13:40:36 +0100 python-biom-format (2.1.10-1) unstable; urgency=medium * Team upload. * New upstream version -- Nilesh Patra Sat, 21 Nov 2020 18:07:53 +0530 python-biom-format (2.1.9-2) unstable; urgency=medium * Team upload. * remove .coverage files. Closes: #974050 -- Michael R. Crusoe Tue, 10 Nov 2020 10:43:29 +0100 python-biom-format (2.1.9-1) unstable; urgency=medium * Team Upload. [ Andreas Tille ] * New upstream version Closes: #950929 * Build-Depends: python3-pytest [ Michael R. Crusoe ] * Build-Depends: python3-pytest-cov -- Michael R. Crusoe Fri, 06 Nov 2020 11:23:23 +0100 python-biom-format (2.1.8+dfsg-3) unstable; urgency=medium * Team Upload. * Add python3-h5py to depends (Fixes debci) * Fix import-name * Fix lintian * Create manpages * compat version: 13 -- Nilesh Patra Sun, 19 Jul 2020 01:26:22 +0530 python-biom-format (2.1.8+dfsg-2) unstable; urgency=medium * Build-Depends: python3-matplotlib Closes: #955662 * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Use secure URI in Homepage field. -- Andreas Tille Fri, 03 Apr 2020 23:18:06 +0200 python-biom-format (2.1.8+dfsg-1) unstable; urgency=medium * Drop cython from Build-Depends Closes: #937605 * New upstream version * Set upstream metadata fields: Bug-Submit. -- Andreas Tille Mon, 20 Jan 2020 11:35:04 +0100 python-biom-format (2.1.7+dfsg-5) unstable; urgency=medium * Set upstream metadata fields: Bug-Database, Repository, Repository- Browse. * Fix Build time test Closes: #943622 -- Andreas Tille Sun, 22 Dec 2019 07:51:11 +0100 python-biom-format (2.1.7+dfsg-4) unstable; urgency=medium [ Steve Langasek ] * Drop Python2 package Closes: #934864, #937605 [ Andreas Tille ] * Fix doc-base control file * Standards-Version: 4.4.1 * Set upstream metadata fields: Repository. -- Andreas Tille Fri, 08 Nov 2019 08:01:35 +0100 python-biom-format (2.1.7+dfsg-3) unstable; urgency=medium * debhelper-compat 12 * Standards-Version: 4.4.0 * executable /usr/bin/biom in Python3 package * Examples in Python3 package to support testing * Do not copy build time tests to doc directory Closes: #919586 * Drop biom-format-tools package - wrapper script is in Python3 package * Provide valid autopkgtest for Python3 module based on upstreams CI test Closes: #896953 -- Andreas Tille Tue, 06 Aug 2019 10:11:48 +0200 python-biom-format (2.1.7+dfsg-2) unstable; urgency=medium * Do not ship *.c and *.pyx cython input files in binary packages * Fix "Could not import extension sphinx.ext.pngmath" Closes: #922258 * Deactivate autopkgtest for the moment since it fails anyway -- Andreas Tille Wed, 13 Feb 2019 22:13:47 +0100 python-biom-format (2.1.7+dfsg-1) unstable; urgency=medium * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * Provide data files for build-time test * Fix permissions * Secure URI in copyright format * Remove trailing whitespace in debian/changelog * rename debian/tests/control.autodep8 to debian/tests/control -- Andreas Tille Fri, 11 Jan 2019 23:50:29 +0100 python-biom-format (2.1.6+dfsg-2) unstable; urgency=medium * Force LC_ALL=C.UTF-8 in build and autopkgtest Closes: #896953, #901073 * Drop ancient X-Python-Version -- Andreas Tille Thu, 21 Jun 2018 05:31:25 +0200 python-biom-format (2.1.6+dfsg-1) unstable; urgency=medium * New upstream version * Fix build with sphinx 1.6 Closes: #896629 * cme fiy dpkg-control - Standards-Version: 4.1.4 - Point Vcs-fields to Salsa - Crop superfluous Breaks/Replaces * debhelper 11 * Build-Depends: - s/python-sphinx/python3-sphinx/ - Added: python-pandas * Adapt doc-base files * Move d/t/control to d/t/control.autodep8 * s/Testsuite: autopkgtest/Testsuite: autopkgtest-pkg-python/ -- Andreas Tille Tue, 24 Apr 2018 18:27:20 +0200 python-biom-format (2.1.5+dfsg-7) unstable; urgency=medium * d/copyright: Update Upstream-Contact * Add another random seed to past tests relieably on all architectures -- Andreas Tille Thu, 12 Jan 2017 09:04:23 +0100 python-biom-format (2.1.5+dfsg-6) unstable; urgency=medium * Add random seed to test that fails under some circumstances Closes: #848410 * debhelper 10 * d/watch: version=4 -- Andreas Tille Mon, 19 Dec 2016 22:29:00 +0100 python-biom-format (2.1.5+dfsg-5) unstable; urgency=medium * Restrict set of architectures also for biom-format-tools to make sure the package will not be built on architectures that are affected by the h5py issue. -- Andreas Tille Wed, 12 Oct 2016 11:09:10 +0200 python-biom-format (2.1.5+dfsg-4) unstable; urgency=medium * Restrict build to those architectures not affected by h5py issue https://github.com/h5py/h5py/issues/428 This does not really close bug #820060 but we can lower its severity at least to important. -- Andreas Tille Mon, 12 Sep 2016 09:01:34 +0200 python-biom-format (2.1.5+dfsg-3) unstable; urgency=medium * Use sphinxdoc Closes: #831239 * Use python-shinx in Build-Depends (instead only Build-Depends-Indep) * cme fix dpkg-control * hardening+=bindnow -- Andreas Tille Thu, 14 Jul 2016 14:04:56 +0200 python-biom-format (2.1.5+dfsg-2) unstable; urgency=medium * Breaks+Replaces: python-biom-format (<= 2.1+dfsg-1) Closes: #820028 * Enable building arch all packages separately Closes: #820621 -- Andreas Tille Sun, 10 Apr 2016 21:45:01 +0200 python-biom-format (2.1.5+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * Removed pyqi as well as generation of bash_completion * Build-Depends: python-click [ Ghislain Antony Vaillant ] * Properly run the upstream testsuite during the package build process * Add packaging testsuite * Provide documentation in separate arch-independent package * d/rules: add call to dh_numpy * let dh_python fill the binary package dependencies * Provide command-line tools in separate package * Provide the Python 3 package -- Andreas Tille Tue, 08 Mar 2016 15:38:30 +0100 python-biom-format (2.1.4+dfsg-2) unstable; urgency=medium * Fix test target Closes: #804441 * Fix clean target enabling building twice in a row -- Andreas Tille Tue, 10 Nov 2015 22:35:15 +0100 python-biom-format (2.1.4+dfsg-1) unstable; urgency=medium * New upstream version Closes: #802867 * Moved from SVN to Git * cme fix dpkg-control * Fix watch file -- Andreas Tille Tue, 27 Oct 2015 18:46:33 +0100 python-biom-format (2.1+dfsg-1) unstable; urgency=medium * New upstream version -- Andreas Tille Tue, 12 Aug 2014 14:43:54 +0200 python-biom-format (2.0.0+dfsg-1) unstable; urgency=medium * New upstream version (adpated Build-Depends and patches) * switch to dh-python using buildsystem=pybuild * New (versioned) Build-Depends * Add ${shlibs:Depends} since package is now arch any -- Andreas Tille Tue, 20 May 2014 19:16:23 +0200 python-biom-format (1.3.1+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * New upstream version (updated patches). New version also does not use Cython Closes: #742691 * Package is now Architecture: all * Incorporate changes by BioLinux * debian/patches/no-web-adds.patch: Save user privacy by preventing inclusion of web adds * Do not install scripts printing "This script no longer exists. ..." any more * Use manpage created by sphinx -- Andreas Tille Thu, 27 Mar 2014 11:52:15 +0100 python-biom-format (1.2.0-1biolinux1) precise; urgency=low * Add runtime dep on PyQi * Patch /usr/bin/biom script to force /usr/lib/python2.7/dist-packages to the top of the PYTHONPATH * Allow building with cython 0.15.1 on Ubuntu as it builds and passes all the tests * Drop deal_with_none_array_metadata for now as it fails the self tests But it's still not right! * Rename add_metadata to something less generic. It will die in the next release anyway. -- Tim Booth Fri, 28 Feb 2014 16:25:41 +0000 python-biom-format (1.2.0-1) unstable; urgency=low * New upstream version * debian/control: - (Build-)Depends: pyqi - Build-Depends: python-nose to enable auto_test * debian/biom.1: Add simple manpage * debian/rules: - activate test using python-nose - deactivate get-orig-source script and use plain uscan since upstream tarball is clean now -- Andreas Tille Mon, 11 Nov 2013 09:24:46 +0100 python-biom-format (1.2.0-0biolinux2) precise; urgency=low * New upstream. * No need for the old cythonize tinkering in rules * Add examples to /usr/share/doc * Also add HTML API docs (single html build) * Build manpages from Sphinx * Add bash completion * Investigate and patch issue converting BIOM to table with taxonomy not set to an array -- Tim Booth Wed, 25 Sep 2013 18:31:40 +0100 python-biom-format (1.1.2-1) unstable; urgency=low * debian/watch: - Enable '+dfsg' suffix in Debian versions - Fix download location - anonscm in Vcs fields * debian/control: - cme fix dpkg-control * Remove workaround cython problem which was needed when 1.0.0 was released because cython at this time was suffering from #682652 * debian/rules: - use help2man to create manpages -- Andreas Tille Thu, 15 Aug 2013 01:17:43 +0200 python-biom-format (1.1.2-0ubuntu1) precise; urgency=low * New upstream. Repack no longer needed. -- Tim Booth Tue, 30 Apr 2013 18:09:17 +0100 python-biom-format (1.0.0+repack-1ubuntu1) precise; urgency=low * Rebuild for Precise * Minor changes to cleanup and get-orig-source that helped me -- Tim Booth Fri, 10 Aug 2012 18:08:06 +0100 python-biom-format (1.0.0-1) unstable; urgency=low * Initial release (Closes: #682242) -- Andreas Tille Fri, 03 Aug 2012 10:38:26 +0200