python-pbcore (2.1.2+dfsg-11) unstable; urgency=medium
[ Andreas Tille ]
* d/p/remove-pkg-resources.patch: replace the usages of pkg_resources
with importlib.resources for Python 3.13 compatibility (Thanks for the
patch to Vladimir Petko)
Closes: #1093230 (LP: #2095040).
* d/t/control: add smoke test.
* Make the build reproducible (Thanks for the patch to Chris Lamb)
Closes: #1089095
[ Étienne Mollier ]
* numpy2.patch: new: workaround overflow errors with numpy 2.
(Closes: #1095090)
* d/control: declare compliance to standards version 4.7.2.
-- Étienne Mollier <emollier@debian.org> Thu, 27 Feb 2025 22:38:34 +0100
python-pbcore (2.1.2+dfsg-10) unstable; urgency=medium
* Remove intersphinx
Closes: #1090155
* d/rules: Fix removal of test remainings
-- Andreas Tille <tille@debian.org> Mon, 16 Dec 2024 18:22:11 +0100
python-pbcore (2.1.2+dfsg-9) unstable; urgency=medium
* d/control: remove dependency on deprecated python3-pkg-resources.
(Closes: #1083675)
* d/patches/*: normalize dep3 headers.
* d/salsa-ci.yml: disable i386 build.
i386 build failure is not fatal on arch-all packages.
-- Étienne Mollier <emollier@debian.org> Sun, 10 Nov 2024 15:33:33 +0100
python-pbcore (2.1.2+dfsg-8) unstable; urgency=medium
* d/rules: remove nudge to use setuptools test. (Closes: #1080396)
* d/rules; remove unknown files in Python module directory.
* d/control: declare compliance to standards version 4.7.0.
-- Étienne Mollier <emollier@debian.org> Tue, 03 Sep 2024 21:57:31 +0200
python-pbcore (2.1.2+dfsg-7) unstable; urgency=medium
* Team upload.
* d/tests/control: restrict tests to 64-bit architectures.
-- Michael R. Crusoe <crusoe@debian.org> Fri, 22 Mar 2024 18:05:46 +0100
python-pbcore (2.1.2+dfsg-6) unstable; urgency=medium
* Team upload.
* d/rules: combine the two dh_auto_clean overrides into one
and use d/clean to simplify that.
* d/control: add dh-sequence dependencies for the addons.
-- Michael R. Crusoe <crusoe@debian.org> Fri, 22 Mar 2024 17:59:15 +0100
python-pbcore (2.1.2+dfsg-5) unstable; urgency=medium
* d/control: bring back support for all python3 versions.
* d/NEWS: remove; affected version not part of maintained releases.
* d/copyright: update copyright years.
* d/control: depend on architecture all only python3 package.
* d/rules: remove empty directory flagged by lintian.
-- Étienne Mollier <emollier@debian.org> Sat, 07 Jan 2023 15:47:39 +0100
python-pbcore (2.1.2+dfsg-4) unstable; urgency=medium
* Standards-Version: 4.6.2 (routine-update)
* Fix AttributeError: module 'numpy' has no attribute 'float'.
Closes: #1027211
-- Andreas Tille <tille@debian.org> Thu, 29 Dec 2022 20:01:16 +0100
python-pbcore (2.1.2+dfsg-3) unstable; urgency=medium
* enable-build-time-testing.patch: remove; cease enforcing nostests.
* d/control: replace nose by pytest. (Closes: #1018551)
* Standards-Version: 4.6.1 (routine-update)
* d/control: add myself to uploaders.
-- Étienne Mollier <emollier@debian.org> Sat, 03 Dec 2022 20:33:13 +0100
python-pbcore (2.1.2+dfsg-2) unstable; urgency=medium
* Fix watch file
* Standards-Version: 4.6.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Remove trailing whitespace in debian/changelog (routine-update)
-- Andreas Tille <tille@debian.org> Sat, 29 Jan 2022 08:10:54 +0100
python-pbcore (2.1.2+dfsg-1) unstable; urgency=medium
[ Michael R. Crusoe ]
* Team upload.
* New upstream version
* Remove trailing whitespace in debian/rules (routine-update)
[ Andreas Tille ]
* Attempt to enhance creation of documentation to address bug #919052
* abandon pyxb, use xmlschema for validation if installed
[ Nilesh Patra ]
* Fix creation of docs
Closes: #919052
-- Andreas Tille <tille@debian.org> Thu, 23 Dec 2021 17:14:59 +0100
python-pbcore (1.7.1+git20200430.a127b1e+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version
* Trim trailing whitespace (routine-update).
* d/rules: allow for repeated builds by fixing clean
-- Steffen Moeller <moeller@debian.org> Tue, 05 May 2020 17:43:06 +0200
python-pbcore (1.7.1+git20200313.41ba394+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version
* Rules-Requires-Root: no (routine-update)
* Cleaning generated doc/*.rst files
* d/u/metadata: Added ref to bioconda
-- Steffen Moeller <moeller@debian.org> Sat, 21 Mar 2020 19:54:46 +0100
python-pbcore (1.7.1+git20200206.d66cbbf+dfsg-1) unstable; urgency=medium
[ Gianfranco Costamagna ]
* Drop pyxb also from test depends (Closes: #950336)
[ Andreas Tille ]
* New upstream version
* Add salsa-ci file (routine-update)
-- Andreas Tille <tille@debian.org> Tue, 25 Feb 2020 09:06:14 +0100
python-pbcore (1.7.1+git20200129.c55621e+dfsg-1) unstable; urgency=medium
* Remove python3-pyxb from Build-Depends
Closes: #950336
* New upstream version
* Standards-Version: 4.5.0 (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
-- Andreas Tille <tille@debian.org> Fri, 31 Jan 2020 16:34:17 +0100
python-pbcore (1.7.1+git20191121.7947eb7+dfsg-3) unstable; urgency=medium
* Build-Depends: s/pylint3/pylint/
Closes: #946426
-- Andreas Tille <tille@debian.org> Mon, 09 Dec 2019 09:06:38 +0100
python-pbcore (1.7.1+git20191121.7947eb7+dfsg-2) unstable; urgency=medium
* Re-upload for testing migration
-- Andreas Tille <tille@debian.org> Sat, 07 Dec 2019 09:37:21 +0100
python-pbcore (1.7.1+git20191121.7947eb7+dfsg-1) unstable; urgency=medium
* Afif removed himself from Uploaders
* Add myself to Uploaders
* New upstream version Git checkout
Drop Python2 support and switch to Python3
Closes: #938009
* debhelper-compat 12
* Standards-Version: 4.4.1
* (Build-)Depends: python3-biopython (>= 1.74)
* Rewrite autopkgtest
* Breaks/Provides/Replaces: python-pbcore (<= (1.7)
-- Andreas Tille <tille@debian.org> Thu, 05 Dec 2019 11:23:55 +0100
python-pbcore (1.6.5+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* Team upload.
* Recommends: python-h5py (its considered an "optional dependency")
* Upstream is now tagging releases - adjust watch file
* Standards-Version: 4.2.1
* Secure URI in copyright format
* Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
* Remove trailing whitespace in debian/changelog
* Build-Depends: s/python-sphinx/python3-sphinx/
[ Drew Parsons ]
* add fix_numpy_1.16_9c065b7.patch applying upstream commit
9c065b724 to fix dtypes for build against numpy 1.16.
Closes: #918212, #917670.
* Standards-Version: 4.3.0
* debhelper compatibility level 12
-- Drew Parsons <dparsons@debian.org> Thu, 10 Jan 2019 11:13:59 +0100
python-pbcore (1.5.0+git20180606.43fcd9d+dfsg-2) unstable; urgency=medium
* Team upload
* Add test Depends: python-h5py
-- Graham Inggs <ginggs@debian.org> Wed, 27 Jun 2018 13:06:45 +0000
python-pbcore (1.5.0+git20180606.43fcd9d+dfsg-1) unstable; urgency=medium
* Team upload
[ Afif Elghraoui ]
* New upstream version (git f3bcf3a)
* Updated patches
* Added tests dependency on python-coverage
* d/control: use build profile declarations
[ Andreas Tille ]
* New upstream version
Closes: #900485
* Relax test constraint which is rather a rounding issue
* d/watch: mode=git
* cme fix dpkg-control
- Point Vcs-fields to Salsa
- Standards-Version: 4.1.4
- Sequence of fields
- Formatting
* debhelper 11
* remove outdated X-Python-Version
* d/rules: Drop get-orig-source target
-- Andreas Tille <tille@debian.org> Tue, 26 Jun 2018 08:13:42 +0200
python-pbcore (1.2.11+dfsg-1) unstable; urgency=medium
* New upstream release (git 32b6883 from 2016-09-19)
* Update patches
-- Afif Elghraoui <afif@debian.org> Thu, 26 Jan 2017 00:23:02 -0800
python-pbcore (1.2.10+dfsg-1) unstable; urgency=medium
* Imported Upstream version 1.2.10+dfsg
* Drop patch applied upstream
* Don't raise exception if pyxb version does not exactly match
(Closes: #839346)
* Bump Standards-Version to 3.9.8
-- Afif Elghraoui <afif@debian.org> Sun, 09 Oct 2016 11:10:59 -0700
python-pbcore (1.2.9+dfsg-1) unstable; urgency=medium
* Imported Upstream version 1.2.9+dfsg
* Refresh patches
* Remove handling for pbdataset script
* Add new tests dependency on python-pyxb
* Add NEWS file to warn users about the missing pbdataset script
* Make corrections to the pbopen manpage
-- Afif Elghraoui <afif@debian.org> Mon, 11 Apr 2016 22:58:38 -0700
python-pbcore (1.2.7+dfsg-2) unstable; urgency=medium
* Fix compatibility with pysam 0.9.0
* Bump standards version
* Use https for VCS URLs
-- Afif Elghraoui <afif@debian.org> Thu, 10 Mar 2016 22:46:31 -0800
python-pbcore (1.2.7+dfsg-1) unstable; urgency=medium
* Revert "Set watch file to point to pypi rather than github"
* Imported Upstream version 1.2.7+dfsg
* Drop patch applied upstream
* Refresh patches
-- Afif Elghraoui <afif@ghraoui.name> Sun, 13 Dec 2015 17:18:26 -0800
python-pbcore (1.2.6+dfsg-1) unstable; urgency=medium
* Set watch file to point to pypi rather than github
* Imported Upstream version 1.2.6+dfsg
* Refresh patches
* Fix compatibility with pysam 0.8.4 (Closes: #805687)
* Add license statement for a file added in-between releases
-- Afif Elghraoui <afif@ghraoui.name> Fri, 27 Nov 2015 12:19:10 -0800
python-pbcore (1.2.4+dfsg-1) unstable; urgency=medium
* Fix watch file after dropping the dfsg counting.
* Imported Upstream version 1.2.4+dfsg
* Drop patch to skip integration tests at build time (applied upstream)
* Drop rename-dataset.py patch in favor of build-time substitution
-- Afif Elghraoui <afif@ghraoui.name> Mon, 26 Oct 2015 21:56:40 -0700
python-pbcore (1.2.3+dfsg-1) unstable; urgency=medium
* Imported Upstream version 1.2.3+dfsg
* Add patch to skip tests if the necessary scripts can't be found
* Install scripts to /usr/bin, but give them sensible names
* Add dependency on python-pkg-resources for python-pbcore
* Add manpage stubs directing users to richer documentation sources
-- Afif Elghraoui <afif@ghraoui.name> Sun, 20 Sep 2015 01:18:26 -0700
python-pbcore (1.2.2+dfsg1-1) unstable; urgency=medium
* Imported Upstream version 1.2.1+dfsg1
* Install upstream-provided convenience scripts
* Refresh patches
* Install upstream changelog and readme in main package (not doc package)
* Enable build-time testing
* Configure autopkgtests
* Drop nonfunctional Python3 package and merge data package with main one
-- Afif Elghraoui <afif@ghraoui.name> Mon, 03 Aug 2015 23:43:39 -0700
python-pbcore (1.0.0-1) experimental; urgency=low
* Initial release (Closes: #787981)
* Add material for autopkgtest
* Use packaged javascript libraries for HTML documentation where available
* Use dh pybuild rather than the upstream-provided Makefile
* Use default documentation theme rather than upstream's with corporate logo
* Provide python3 package
* Prepare python-pbcore-data package
* Prepare documentation package
* Add autopkgtest for python3 package
* Update uscan calls to append suffix to package name for next release
-- Afif Elghraoui <afif@ghraoui.name> Sat, 06 Jun 2015 23:35:12 -0700