rdkit (201809.1+dfsg-6) unstable; urgency=medium * debian/patches/fix_coordgen_include_path.patch: New patch, fixes the include path for system-installed coordgen headers. -- Michael Banck Thu, 31 Jan 2019 14:20:27 +0100 rdkit (201809.1+dfsg-5) unstable; urgency=medium * debian/patches/series: Reenabled and refreshed NoDownloads.patch (Closes: #920986). -- Michael Banck Thu, 31 Jan 2019 12:36:47 +0100 rdkit (201809.1+dfsg-4) unstable; urgency=medium * debian/patches/postgres_Makefile_fixes.patch: Replace @RDKIT_PARALLEL_SAFE@ tag according to version. * debian/control.in: Added libschroedinger-coordgenlibs-dev and libschroedinger-maeparser-dev. * debian/control: Regenerated. * debian/rules (override_dh_auto_configure): Removed -DRDK_BUILD_COORDGEN_SUPPORT=OFF and -RDK_BUILD_MOLINTERCHANGE_SUPPORT=OFF. * debian/patches/disable_hanging_test.patch: Removed and replaced with ... * debian/patches/testcase_32bit_fix.patch: ... this patch, taken from upstream commit 3f3613c8. -- Michael Banck Sat, 26 Jan 2019 15:09:55 +0100 rdkit (201809.1+dfsg-3) unstable; urgency=medium * debian/control.in (Build-Depends): Removed python-epydoc (Closes: #881562). * debian/control: Regenerated. -- Michael Banck Wed, 09 Jan 2019 10:58:57 +0100 rdkit (201809.1+dfsg-2) unstable; urgency=medium * debian/patches/catch2_header.patch: New patch, adds the catch2 headers from https://github.com/catchorg/Catch2/ which are otherwise downloaded during build. -- Michael Banck Wed, 09 Jan 2019 10:46:23 +0100 rdkit (201809.1+dfsg-1) unstable; urgency=medium * New upstream release. * debian/patches/disable_hanging_test.patch: Updated. * debian/copryright (Files-Excluded): Removed files no longer present in the upstream tarballs. * debian/patches/sphinx_imgconverter.patch: New patch, enabled the Sphinx imgconverter extension in order to conver the .svg files for LaTeX. * debian/control.in (Build-Depends): Added imagemagick and librsvg2-bin. * debian/control: Regenerated. * debian/rules (override_dh_auto_build): Remove epydoc build, no longer present upstream. -- Michael Banck Wed, 09 Jan 2019 00:00:46 +0100 rdkit (201803.4+dfsg-3) unstable; urgency=medium * debian/patches/postgres_Makefile_fixes.patch: Remove -mpopcnt from PG_CPPFLAGS. * debian/control.in (postgresql-PGVERSION-rdkit/Section): Fixed. * debian/control.in: Fixed spelling error in description. * debian/control.in (postgresql-PGVERSION-rdkit/Description): Shortened short description. * debian/control: Regenerated. -- Michael Banck Tue, 08 Jan 2019 21:00:28 +0100 rdkit (201803.4+dfsg-2) unstable; urgency=medium [ Andreas Tille ] * Point Vcs fields to Salsa [ Michael Banck ] * debian/patches/disable_hanging_test.patch: New patch, removes the testEnumeration test, which makes 32-bit architectures hang (Closes: #894202). -- Michael Banck Tue, 08 Jan 2019 17:03:28 +0100 rdkit (201803.4+dfsg-1) unstable; urgency=medium * New upstream release. * Team upload. [ Steffen Moeller ] * Standards-Version: 4.2.1 [ Michael Banck ] * debian/rules (override_dh_auto_configure): -DRDK_BUILD_COORDGEN_SUPPORT=OFF and -RDK_BUILD_MOLINTERCHANGE_SUPPORT=OFF added. * debian/patches/series: Disabled NoDownloads.patch. * debian/control (Build-Depends): Added postgresql-server-dev-all. * debian/control.in: New file, add postgresql-PGVERSION-rdkit package. * debian/control: Refreshed for unstable. * debian/pgversions: New file. * debian/patches/postgres_v11_support.patch: New patch, adds support for PostgreSQL 11. * debian/rules: Add PostgreSQL extension support via pg_buildext. * debian/patches/postgres_Makefile_fixes.patch: New patch, adds assorted fixes for the PostgreSQL Cartridge Makefile. * debian/patches/postgres_disable_failing_tests.patch: New patch, disables some installcheck tests that fail with Boost assertions. * debian/tests/control, debian/tests/installcheck: Add autopkgtests for the PostgreSQL Cartridge. -- Michael Banck Sun, 09 Dec 2018 14:10:19 +0100 rdkit (201709.3+dfsg-1) unstable; urgency=medium * Team upload. * New upstream release. Closes: #893177 * d/watch: uversionmangle to match chosen Debian version * Build-Depends: s/python-imaging/python-pil/ * Fix doc generation by using python3-sphinx and python3-recommonmark in Build-Depends -- Andreas Tille Mon, 26 Mar 2018 13:18:47 +0200 rdkit (201603.5+dfsg-1) unstable; urgency=medium * Team upload. * Moved packaging from SVN to Git * DEP5 * Repack tarball to exclude *.chm file * Build-Depends: latexmk Closes: #872246 * Standards-Version: 4.1.2 -- Andreas Tille Mon, 18 Dec 2017 12:09:00 +0100 rdkit (201603.5-2) unstable; urgency=medium * Team upload. * debian/control (Build-Depends): Added pandoc and texlive-generic-extra. (Closes: #831264) * debian/rules (override_dh_auto_configure): Added -DRDK_OPTIMIZE_NATIVE=OFF to prevent FTBFS on ppc64el. -- Graham Inggs Mon, 07 Nov 2016 14:50:50 +0200 rdkit (201603.5-1) unstable; urgency=medium * New upstream release. New features include: - Addition of parsers/writers for sequence notation, FASTA, and basic HELM - Improved conformation generation based on experimental torsional parameters - Much better filtering of generated conformations to ensure they match the chirality of the input structure - New method for enumerating molecular resonance structures - Addition of a molecular FilterCatalog data structure [ Daniel Leidert ] * debian/compat: Raised to level 9. * debian/control (Build-Depends): Switched to dh-python (closes: #786180). (Standards-Version): Bumped to 3.9.6. (Depends): Dropped python-numpy and let dh_numpy handle this. * debian/rules: Added override for dh_python2 and call dh_numpy. * debian/watch: Updated after project moved to Github. * debian/patches/series: Added. [ Michael Banck ] * debian/rules (override_dh_auto_clean): No longer remove Code/RDGeneral/versions.h, this is shipped upstream now. * debian/rdkit-doc.install: Removed, no longer needed. * debian/rules (override_dh_installchangelogs): Update for new ReleaseNotes extension. * debian/rules (override_dh_auto_clean): Added Code/RDGeneral/versions.cpp and auto-generated restructed-text source files. -- Michael Banck Sun, 23 Oct 2016 23:07:02 +0200 rdkit (201503-2) unstable; urgency=medium * debian/rules (override_dh_install): Create $(DOCDIR). -- Michael Banck Tue, 09 Jun 2015 01:31:58 +0200 rdkit (201503-1) unstable; urgency=medium * New upstream release (closes: #785192). * debian/control (Description): Updated. * debian/control (Build-Depends): Added python-sphinx * debian/rules (override_dh_auto_build): New rule, build PDF user documentation. * debian/control (Build-Depends): Added doxygen and python-epydoc. * debian/rdkit-doc.dirs: New file. * debian/rules (DOCDIR): New variable. * debian/rdkit-doc.install: Only install overview presentation. * debian/rules (override_dh_auto_build): Build python and C++ API documentation with python-epydoc and doxygen, as well as HTML documentation. * debian/rules (override_dh_install): Install PDF and HTML documentation. * debian/rdkit-doc.doc-base: Reference PDF/HTML documentation and no longer the overview PDF. * debian/rules (override_dh_auto_clean): Remove files generated while building documentation. * debian/control (Build-Depends): Added texlive-latex-base, texlive-latex-recommended, texlive-latex-extra and texlive-fonts-recommended. -- Michael Banck Sun, 07 Jun 2015 15:07:00 +0200 rdkit (201403-1) unstable; urgency=medium * New upstream release. * debian/patches/733359_bison3_compatibility.patch: Dropped. Fix applied to upstream. * debian/patches/series: Removed. -- Michael Banck Sat, 25 Oct 2014 19:11:53 +0200 rdkit (201309-1) unstable; urgency=low * New upstream release. [ Daniel Leidert ] * debian/control (Standards-Version): Bumped to 3.9.5. * debian/patches/733359_bison3_compatibility.patch: Added. - Fix syntax for bison 3.x to fix FTBFS (closes: #733359). * debian/patches/series: Added. -- Debichem Team Sun, 29 Dec 2013 01:53:13 +0100 rdkit (201306-2) unstable; urgency=low [ Daniel Leidert ] * debian/control (Build-Depends): Added python-imaging for pythonTestDirChem. * debian/rules (override_dh_auto_test): Fixed LD_LIBRARY_PATH to re-enable tests. Added path to rdchem.so to PYTHONPATH to fix pythonTestDirChem. -- Debichem Team Thu, 01 Aug 2013 00:31:14 +0200 rdkit (201306-1) unstable; urgency=low * New upstream release. [ Daniel Leidert ] * debian/control (Vcs-Browser, Vcs-Svn): Fixed vcs-field-not-canonical. * debian/patches/fix_ftbfs_mtsss.patch: Dropped. Fix applied to upstream. * debian/patches/series: Removed. -- Debichem Team Tue, 30 Jul 2013 01:58:06 +0200 rdkit (201303-1) unstable; urgency=low * New upstream release. [ Michael Banck ] * debian/patches/big-endian_support.patch: Removed, applied upstream. * debian/rules (override_dh_auto_test): Honor DEB_BUILD_OPTIONS=nocheck. * debian/rules (override_dh_auto_test): Ignore test suite failures for now. * debian/rules (override_dh_install): New target, run dh_numpy. [ Daniel Leidert ] * debian/control: Dropped DM-Upload-Allowed. Added Provides and XB-Python-Version for python package. (Build-Depends): Added libboost-system-dev and libboost-thread-dev. Added python-pandas for tests. (Standards-Version): Bumped to 3.9.4. (Section): Fixed binary-control-field-duplicates-source. (Depends): Added missing depends to library for dev package. Added fonts-freefont-ttf because python-rdkit uses FreeSans.ttf. * debian/copyright: Updated. * debian/librdkit1.lintian-overrides: Added. * debian/python-rdkit.links: Add link for FreeSans.ttf. * debian/rdkit-doc.doc-base: Added. * debian/rules: Enabled hardening. Installed upstream changelog. (override_dh_auto_configure): Added -DRDK_BUILD_THREADSAFE_SSS=ON, -DCMAKE_SKIP_RPATH and -DCMAKE_BUILD_TYPE=None. (override_dh_install): List missing files. * debian/patches/fix_ftbfs_mtsss.patch: Added. - Fix linkage of libRDBoost.so when using -DRDK_BUILD_THREADSAFE_SSS=ON. * debian/patches/series: Adjusted. -- Debichem Team Sat, 25 May 2013 12:48:23 +0200 rdkit (201203-3) unstable; urgency=low * debian/patches/big-endian_support.patch: New patch, fixes big-endian architectures, taken from upstream revisions 2071, 2079, 2080 and 2140. * debian/rules (override_dh_auto_test): Activate testsuite again (Closes: #678188). -- Michael Banck Sat, 28 Jul 2012 21:18:42 +0200 rdkit (201203-2) unstable; urgency=low * debian/rules (override_dh_auto_test): Deactivated for now (Closes: #670053, #670054). -- Michael Banck Tue, 12 Jun 2012 13:45:10 +0200 rdkit (201203-1) unstable; urgency=low * New upstream release. -- Michael Banck Fri, 18 May 2012 15:09:10 +0200 rdkit (201112-1) unstable; urgency=low * New upstream release. The RDKit book license has been clarified to Creative Commons Attribution-ShareAlike 3.0 License, so a stripped original tarball is no longer required. [ Michael Banck ] * debian/control (python-rdkit): Added python-numpy to Depends. * debian/rdkit-doc.install: Fix path (Closes: #661976). * debian/rules (override_dh_auto_test): Copy over python files into obj directory and set $PYTHONPATH correctly, thanks to Jakub Wilk. Also set $RDBASE accordingly. * debian/rules (override_dh_auto_clean): New target, remove some files added during build which do not get removed by the default dh_auto_clean. [ Daniel Leidert (dale) ] * debian/watch: Added. -- Michael Banck Sun, 04 Mar 2012 19:50:59 +0100 rdkit (201106+dfsg-1) unstable; urgency=low * Initial upload (Closes: #640118). -- Michael Banck Sat, 03 Sep 2011 16:14:53 +0200