Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: SeqAn Upstream-Contact: Manuel Holtgrewe Hannes Röst Source: http://packages.seqan.de/ Files-Excluded: util/py_lib/seqan/dox util/py_lib/seqan/dddoc util/py_lib/clang util/py_lib/termcolor.py util/py_lib/threadpool util/py_lib/pyratemp.py util/mingw .* */*.bak */*HUGE.png */*LARGE.png Files: * Copyright: 2006-2016, Knut Reinert, FU Berlin Andreas Döring David Weese Tobias Rausch Stephan Aiche Anne-Katrin Emde Carsten Kemena Konrad Ludwig Moritz Rudolph Marcel H. Schulz. Manuel Holtgrewe Hannes Röst License: BSD-3-clause Files: apps/dfi/* Copyright: 2008 David Weese and Marcel H. Schulz License: GPL-3+ Files: apps/insegt/*.cpp apps/insegt/*.h Copyright: 2007 Knut Reinert License: GPL-3+ Files: apps/pair_align/* Copyright: 2007-2012 Knut Reinert License: GPL-3+ Files: apps/param_chooser/* apps/tree_recon/* Copyright: 2006-2016 Knut Reinert, FU Berlin License: LGPL-3+ Files: apps/param_chooser/param_chooser.cpp Copyright: 2008 Anne-Katrin Emde License: LGPL-3+ Files: apps/rep_sep/* Copyright: 2009 by Stephan Aiche License: GPL-3+ Files: apps/rabema/* demos/unassigned_or_unused/arg_align.cpp demos/unassigned_or_unused/minimapper.cpp demos/howto/scores/load_score.cpp demos/howto/scores/init_score.cpp Copyright: 2010-2012 Manuel Holtgrewe, FU Berlin License: GPL-3+ Files: apps/razers/* apps/splazers/* Copyright: 2008-2012 Anne-Katrin Emde, David Weese License: LGPL-3+ Files: apps/seqan_tcoffee/* Copyright: 2009 Tobias Rausch License: LGPL-3+ Files: apps/sgip/* Copyright: 2012 Jialu Hu License: LGPL-3+ Files: apps/snp_store/* Copyright: 2008 Anne-Katrin Emde License: LGPL-3+ Files: apps/stellar/* Copyright: 2010-2012 Birte Kehr License: LGPL-3+ Files: include/seqan/stream/iostream_*.h Copyright: 2003 Jonathan de Halleux 2014 David Weese License: zlib This software is provided 'as-is', without any express or implied warranty. In no event will the authors be held liable for any damages arising from the use of this software. . Permission is granted to anyone to use this software for any purpose, including commercial applications, and to alter it and redistribute it freely, subject to the following restrictions: . 1. The origin of this software must not be misrepresented; you must not claim that you wrote the original software. If you use this software in a product, an acknowledgment in the product documentation would be appreciated but is not required. 2. Altered source versions must be plainly marked as such, and must not be misrepresented as being the original software. 3. This notice may not be removed or altered from any source distribution Files: include/seqan/basic/boost_preprocessor_subset.h Copyright: 2002 Paul Mensonides License: BSL-1.0 Files: include/seqan/basic/concept_checking.h Copyright: 2002 John Maddock License: BSL-1.0 Files: include/seqan/basic/fundamental_concepts.h Copyright: 2000 Jeremy Siek 2002 The Trustees of Indiana University License: BSL-1.0 Files: debian/* Copyright: 2016 Michael R. Crusoe Kevin Murray Andreas Tille License: BSD-3-clause License: BSD-3-clause Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: . * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of Knut Reinert or the FU Berlin nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. License: BSL-1.0 Boost Software License - Version 1.0 - August 17th, 2003 . Permission is hereby granted, free of charge, to any person or organization obtaining a copy of the software and accompanying documentation covered by this license (the "Software") to use, reproduce, display, distribute, execute, and transmit the Software, and to prepare derivative works of the Software, and to permit third-parties to whom the Software is furnished to do so, all subject to the following: . The copyright notices in the Software and this entire statement, including the above license grant, this restriction and the following disclaimer, must be included in all copies of the Software, in whole or in part, and all derivative works of the Software, unless such copies or derivative works are solely in the form of machine-executable object code generated by a source language processor. . THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. License: GPL-3+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . Comment: On Debian systems, you can find the GPL license version 3 in ‘/usr/share/common-licenses/GPL-3’. License: LGPL-3+ This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. . This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. Comment: On Debian systems, you can find the LGPL license version 3 in ‘/usr/share/common-licenses/LGPL-3’.