Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: snakemake Upstream-Contact: Johannes Köster Source: https://github.com/snakemake/snakemake Files: * Copyright: 2015-2023 Johannes Köster , Manuel Holtgrewe, Christopher Tomkins-Tinch, Sven Nahnsen, Sebastian Kurscheid, Chris Burr, BIH Core Unit Bioinformatics, Taavi Päll, Christian Meesters and contributors License: Expat Comment: The original source contains some CC-BY-SA snippets by Stack Overflow users (https://stackoverflow.com/users/2012682/brice-m-dempsey, https://stackoverflow.com/users/650222/coldfix, https://stackoverflow.com/users/14343/ned-batchelder, https://stackoverflow.com/users/5299236/kevin-guan, https://stackoverflow.com/users/20713/ephemient, https://stackoverflow.com/users/34910/nate-parsons, https://stackoverflow.com/users/4785947/christian-zielinski, https://stackoverflow.com/users/3743213/seth127, https://stackoverflow.com/users/2838606/amir, https://stackoverflow.com/users/4159907/schoyen, https://stackoverflow.com/users/95810/alex-martelli, https://stackoverflow.com/users/1723886/alex-telon, https://stackoverflow.com/users/1417016/wpoely86, https://stackoverflow.com/users/97828/nadia-alramli, https://stackoverflow.com/users/35070/phihag), but these may be too small to be copyrightable, and the less trivial ones are patched out in this package Files: tests/test_script/expected-results/test.html tests/test_issue635/expected-results/report.html Copyright: 2005, 2015 jQuery Foundation, Inc. (jquery) 2011-2015 Twitter, Inc. (bootstrap) 2014 Alexander Farkas (@afarkas), @jdalton, @jon_neal, @rem (html5shiv) 2013 Scott Jehl (Respond.js) 2008-2016 jQuery Foundation and other contributors (jquery-ui) 2013 Greg Franko (jquery Tocify) 2014 Aidan Lister and Ruben Arslan (jQuery Plugin: Sticky Tabs) License: Expat Comment: These are test references, we don't actually run this code. For source code of these modules, see r-cran-rmarkdown (for this version, 0.8 for test_script, 1.17 for test_issue635) and dependencies. Files: tests/test_report/expected-results/report.html tests/test_report_zip/expected-results/report.zip tests/test_report_dir/expected-results/report.zip tests/test_module_report/expected-results/report.html tests/test_report_display_code/expected-results/report.html Copyright: 2005-2018 JS Foundation and other contributors (https://github.com/jquery/jquery jquery 3.3.1) 2018 Federico Zivolo (https://github.com/popperjs/popper-core Popper.js 1.14.3) 2011-2018 The Bootstrap Authors (https://github.com/twbs/bootstrap/graphs/contributors) (https://github.com/twbs/bootstrap twitter-bootstrap 4.1.1) 2009-2018 The MathJax Consortium (https://github.com/mathjax/MathJax mathjax 2.7.4) 2013-2019 University of Washington Interactive Data Lab (https://github.com/vega vega 5.6.0, vega-lite 3.4.0, vega-embed 5.1.3) 2014-2018 Cole Bemis (https://github.com/feathericons/feather feather-icons 4.7.3) 2016 Jed Watson (https://github.com/JedWatson/classnames classnames 2.2.5) 2013-2017 Ashley White (https://github.com/ashleydw/ekko-lightbox ekko-lightbox 5.3.0) 2011-2018 Eli Grey and contributors (https://github.com/eligrey/FileSaver.js FileSaver.js 2.0.0) 2008-2019 SpryMedia Ltd. (https://github.com/DataTables DataTables 1.10.20, Responsive 2.2.2, Select 1.3.0) 2007-2015 Ariel Flesler (https://www.github.com/flesler/jquery.scrollTo jquery.scrollTo 2.1.2) License: Expat and Apache-2.0 and BSD-3 Comment: These are test references, we don't actually run this code. vega* is BSD-3, mathjax Apache-2, others Expat. Files: debian/* Copyright: 2015-2023 Kevin Murray and Debian Med Team License: Expat License: Expat Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: . The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. . THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. License: BSD-3 Copyright (c) 2015-2018, University of Washington Interactive Data Lab All rights reserved. . Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: . 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. . 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. . 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. License: Apache-2.0 see /usr/share/common-licenses/Apache-2.0