snap for Debian --------------- Renaming of main executable =========================== Due to a name conflict with /usr/bin/snap from snapd tool to interact with Ubuntu Core Snappy the main executable needs to be renamed. This snap package now provides the binary /usr/bin/snap-hmm To remain compatible with local user scripts using the name snap the old name of the executable is provided under the PATH /usr/lib/debian-med/bin/snap So if you want to use snap with its original name just do the following: Set the PATH variable like export PATH=/usr/lib/debian-med/bin:$PATH The PATH can be set very easily by making use of the feature of the med-config package of the Debian Med Blend. Once med-config is installed for Bash users who create a file ${HOME}/.blends containing the string "debian-med" the PATH is automatically extended and thus users who consider themselves Debian Med users have access to the originally named executables. Dropped Perl scripts ==================== The Perl scripts cds-trainer.pl and noncoding-trainer.pl are needing the following Perl modules: IK.pm, FAlite.pm, DataBrowser.pm A web search leads to https://github.com/KorfLab/LearnGit which is a bit mysterious because it is a "Git learning" project and no serious bio informatics Perl module. Since this all seems a bit strange it was decided to drop the two Perl scripts with unavailable Perl modules and the user who might really need these is asked to provide more detailed information. -- Andreas Tille Fri, 23 Dec 2016 12:27:28 +0100