snpeff (5.2.e+dfsg-1) unstable; urgency=medium * New upstream version 5.2.e+dfsg * Refreshing patches * Raising Standards version to 4.7.0 (no change) * Updating the list of files to remove when repacking -- Pierre Gruet Sat, 05 Oct 2024 22:58:54 +0200 snpeff (5.2.b+dfsg-1) unstable; urgency=medium [ Pierre Gruet ] * New upstream version * Refreshing patches * Changing the path to tests in the autopkgtest * Alleviating d/rules and correcting paths in the patches as build-time test .java files are now conveniently located under src/test * Removing now unused Lintian override [ Andreas Tille ] * Remove trailing whitespace in debian/copyright (routine-update) * Lintian-override for all source-is-missing issues * d/watch: fix download name -- Andreas Tille Tue, 28 Nov 2023 16:56:18 +0100 snpeff (5.1+d+dfsg-3) unstable; urgency=medium * Lowering heap allocation for non 64-bit architectures -- Pierre Gruet Fri, 20 Jan 2023 20:55:32 +0100 snpeff (5.1+d+dfsg-2) unstable; urgency=medium * Depending on biojava6 instead of biojava5 * Raising Standards version to 4.6.2 (no change) * Update Lintian override info format in d/source/lintian-overrides on line 2 * Adding a Lintian override for the bad-jar-name tag * Correcting the mismatched Lintian overrride about embedded JS -- Pierre Gruet Thu, 12 Jan 2023 21:21:57 +0100 snpeff (5.1+d+dfsg-1) unstable; urgency=medium * New upstream version 5.1+d+dfsg * Raising Standards version to 4.6.1 (no change) * Refreshing patches * Mangling in debian/watch to follow upstream versioning scheme * Updating the list of files to exclude when repacking * (Build-)depending only on needed -doc packages (Closes: #1012257) -- Pierre Gruet Thu, 02 Jun 2022 20:43:41 +0200 snpeff (5.1+dfsg-2) unstable; urgency=medium * Depending on libbiojava5-java instead of libbiojava4-java * Refreshing patches * Refreshing d/maven.rules * Removing junit4-doc as build-dependency * Putting changes related to FastQ classes and biojava5 classes into two different patches -- Pierre Gruet Thu, 24 Feb 2022 07:09:20 +0100 snpeff (5.1+dfsg-1) unstable; urgency=medium * New upstream version 5.1+dfsg * Using tags instead of releases in d/watch * Refreshing patches * Refreshing d/copyright * Updating classpath, dependencies list and related Maven rules, notably switching to junit5 * The path of the config file in the source has moved * Using Debian-packaged biojava4 instead of biojava6, while upstream previously used biojava3 * Disabling tests needing files that are not available * Marking the doc package as Multi-Arch: foreign * Adding a Lintian override for a file with very-long-lines * Removing README.source about Mavenization * Having the conffile provided by libsnpeff-java instead of snpeff, as the lib itself now needs it * Adding autopkgtest based on unit tests -- Pierre Gruet Wed, 09 Feb 2022 13:12:02 +0100 snpeff (4.3t+dfsg1-2) unstable; urgency=medium * Source-only upload * Adding a Lintian override for "we" in long description -- Pierre Gruet Sat, 22 Jan 2022 20:45:23 +0100 snpeff (4.3t+dfsg1-1) experimental; urgency=medium * Initial release (Closes: #986141) -- Pierre Gruet Sat, 22 Jan 2022 14:41:57 +0100