Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: TopHat Upstream-Contact: Daehwan Kim Source: http://ccb.jhu.edu/software/tophat/index.shtml Comment: Cole Trapnell wrote TopHat. TopHat is built on Bowtie, which was written by Ben Langmead and Cole Trapnell. Daehwan Kim and Geo Pertea added support for SOLiD reads. Files-Excluded: */src/SeqAn* */src/intervaltree* */src/sortedcontainers* */src/samtools-0.1.18* Files: * Copyright: © 2003-2010 Cole Trapnell et al License: Artistic Files: ax_boost_thread.m4 Copyright: © 2009 Thomas Porschberg © 2009 Michael Tindal License: GAP Files: ax_boost_base.m4 Copyright: © 2009 Thomas Porschberg License: GAP Files: aclocal.m4 Copyright: © 1996-2005 Free Software Foundation, Inc. License: M4-free This file is free software; the Free Software Foundation gives unlimited permission to copy and/or distribute it, with or without modifications, as long as this notice is preserved. Files: INSTALL configure Copyright: © 1992-2010 Free Software Foundation, Inc. License: autobuild-free This configure script is free software; the Free Software Foundation gives unlimited permission to copy, distribute and modify it. Files: debian/* Copyright: © 2011 Carlos Borroto © 2016 Alex Mestiashvili License: GPL-2+ License: Artistic This program is free software; you can redistribute it and/or modify it under the terms of the Artistic License, which comes with Perl. . On Debian systems, the complete text of the Artistic License can be found in `/usr/share/common-licenses/Artistic'. License: GAP Copying and distribution of this file, with or without modification, are permitted in any medium without royalty provided the copyright notice and this notice are preserved. License: GPL-2+ This package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. . This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . On Debian systems, the complete text of the GNU General Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".