transdecoder (5.7.1-2) unstable; urgency=medium

  * d/tests/control: skip tests when hmmer is not available on that
    architecture.

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 14 Sep 2023 12:37:41 +0200

transdecoder (5.7.1-1) unstable; urgency=medium

  * d/watch: update to new tag format.
  * New upstream version
  * Standards-Version: 4.6.2 (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit.
  * d/patches: drop fix-whatis and reproducible-sample_data.patch.
  * d/patches/no_sudo: don't use sudo during clean operation
  * d/patches/2to2: forward upstream
  * d/control, d/tests/control: add ncbi-blast+ for makeblastdb
                                hmmer for hmmpress,
                                r-base-core, r-cran-ggplot2, r-bioc-seqlogo
  * d/patches/test_path.patch: fix some test paths.
  * d/transdecoder-docs.docs: new readme name.
  * upstream no longer used POD, so drop the pod2man usage.

 -- Michael R. Crusoe <crusoe@debian.org>  Wed, 13 Sep 2023 22:54:52 +0200

transdecoder (5.0.1-5) unstable; urgency=medium

  * Team upload.
  * d/control: Suggests: transdecoder-doc.
    Thanks to Andreas Beckmann <anbe@debian.org> (Closes: #988852)

 -- Étienne Mollier <emollier@debian.org>  Mon, 13 Dec 2021 21:25:21 +0100

transdecoder (5.0.1-4) unstable; urgency=medium

  * Fix watchfile to detect new versions on github (routine-update)
  * Standards-Version: 4.6.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.

 -- Andreas Tille <tille@debian.org>  Sun, 29 Aug 2021 18:01:57 +0200

transdecoder (5.0.1-3) unstable; urgency=medium

  * Use 2to3 to port from Python2 to Python3
    Closes: #945719
  * debhelper-compat 12
  * Standards-Version: 4.4.1
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.

 -- Andreas Tille <tille@debian.org>  Fri, 10 Jan 2020 12:04:54 +0100

transdecoder (5.0.1-2) unstable; urgency=medium

  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
  * Remove trailing whitespace in debian/changelog
  * Remove trailing whitespace in debian/copyright
  * Fix Perl path

 -- Andreas Tille <tille@debian.org>  Tue, 30 Oct 2018 14:25:40 +0100

transdecoder (5.0.1-1) unstable; urgency=medium

  * New upstream version (no need to repackage since binary files are now
    removed upstream)
  * Upstream changelog: cdhit has been removed and replaced by our own fast
    method for removing redundancies
  * Standards-Version: 4.1.3
  * debhelper 11
  * Add missing Depends: r-base-core, python
  * d/rules: do not parse d/changelog
  * Fix permissions

 -- Andreas Tille <tille@debian.org>  Mon, 19 Feb 2018 15:11:06 +0100

transdecoder (3.0.1+dfsg-1) unstable; urgency=medium

  * Add Multi-Arch: foreign hint to transdecoder-doc
  * New upstream release

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Thu, 10 Nov 2016 03:21:20 -0800

transdecoder (3.0.0+dfsg-3) unstable; urgency=medium

  * Apply fix for FTBFS from Chris Lamb <lamby@debian.org>, (Closes:
    #839297)
  * Fix running of autopkgtests

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sun, 02 Oct 2016 06:31:59 -0700

transdecoder (3.0.0+dfsg-2) unstable; urgency=medium

  [ Andreas Tille ]
  * Use xz compression for repackaged tarball
  * Simplify overrides
  * Delete unneeded empty directory
  * Fix permission of some file that should not be executable

  [ Michael R. Crusoe ]
  * clean up after tests to improve reproducibility and reduce package size

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 23 May 2016 12:46:27 -0700

transdecoder (3.0.0+dfsg-1) unstable; urgency=medium

  * new upstream release

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 18 May 2016 03:03:30 -0700

transdecoder (2.1.0+dfsg-1) unstable; urgency=medium

  * New upstream release
  * Drop 'reproducible-build' patch, incorprorated upstream

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 18 May 2016 02:28:29 -0700

transdecoder (2.0.1+dfsg-3) unstable; urgency=medium

  [ Eduard Sanou ]
  * Set a hash seed for Perl before generating sample_data/transcripts.fasta
    to get a reproducible output. Closes: #822268

  [ Michael R. Crusoe ]
  * Updated VCS URLs, bumped standards version, forwarded Eduard's patch
    upstream.

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sun, 24 Apr 2016 11:53:12 -0700

transdecoder (2.0.1+dfsg-2) unstable; urgency=medium

  [ Andreas Tille ]
  * Slightly enhanced short description
  * Lintian override for false positive package-contains-timestamped-gzip
  * DEP3 headers

  [ Charles Plessy ]
  * Make output reproducible.
    Closes: #809187

 -- Andreas Tille <tille@debian.org>  Mon, 28 Dec 2015 08:26:27 +0100

transdecoder (2.0.1+dfsg-1) unstable; urgency=low

  * Initial release (Closes: #778300)

 -- Michael R. Crusoe <mcrusoe@msu.edu>  Fri, 13 Feb 2015 06:26:24 -0500