Trimmomatic for Debian ====================== The adapters are installed to /usr/share/trimmomatic/*.fa Here is an example command line: TrimmomaticSE -phred33 input.fq.gz output.fq.gz \ ILLUMINACLIP:/usr/share/trimmomatic/TruSeq3-SE.fa:2:30:10 \ LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 -- Andreas Tille Thu, 26 Feb 2015 21:52:47 +0100