tvc for Debian -------------- Usage example: tvc \ --input-bam /usr/share/TVC/examples/example1/test.bam \ --reference /usr/share/TVC/examples/example1/reference.fasta \ --target-file /usr/share/TVC/examples/example1/test_unmerged_detail.bed \ --error-motifs /usr/share/TVC/sse/motifset.txt \ --parameters-file /usr/share/TVC/pluginMedia/parameter_sets/ampliseq_somatic_lowstringency_pgm_parameters.json \ --output-dir /tmp/TVC \ --output-vcf small_variants.vcf For more information see http://ioncommunity.thermofisher.com/community/products/software/torrent-variant-caller -- Dominique Belhachemi Sun, 08 Mar 2015 15:30:08 -0400