xmds2 (3.1.0+dfsg2-10) unstable; urgency=medium
* Team upload.
* debian/tests/run-tests: Allow oversubscription and set the SSH agent
using the new environment variables for OpenMPI 5.
-- Santiago Vila <sanvila@debian.org> Mon, 04 Nov 2024 20:10:00 +0100
xmds2 (3.1.0+dfsg2-9) unstable; urgency=medium
* d/control: Bump Standards-Version to 4.7.0 (no changes needed)
* Use importlib.resources instead of pkg_resources (closes: #1083992)
+ d/control: Drop dependency on python3-pkg-resources
+ d/p/use-importlib-resources-module.patch: New patch
* Add Applied-Upstream fields to the following patches:
+ d/p/do-not-use-imp-module.patch
+ d/p/extra-alignment-tab.patch
+ d/p/numpy-asscalar.patch
+ d/p/pygments-style-lexer.patch
* d/p/drop-useless-imports.patch: New patch.
This avoids the import of the deprecated module pipes. (Closes: #1084592)
* d/p/invalid-escape-sequences.patch: New patch
* d/rules: Improve message for chmod wscript
-- Rafael Laboissière <rafael@debian.org> Sat, 12 Oct 2024 10:23:40 -0300
xmds2 (3.1.0+dfsg2-8) unstable; urgency=medium
* d/s/options: Do not exclude files under xpdeint/waf/
* d/p/do-not-use-imp-module.patch: New patch (Closes: #1061766)
* d/control: Drop unnecessary build-dependencies on
libjs-{jquery,sphinxdoc,jquery}
* Use dh_sphinxdoc instead of manually creating symlinks for *.js
files
-- Rafael Laboissière <rafael@debian.org> Tue, 30 Jan 2024 11:29:12 -0300
xmds2 (3.1.0+dfsg2-7) unstable; urgency=medium
* Simplify dependencies on hdf5 and h5py, related to MPI
+ d/p/h5py-always-use-mpi.patch: Drop patch
+ d/control:
- Drop (build-)dependencies on both libhdf5-mpi-dev and
python3-h5py-mpi.
- Add versioned (build-)dependency (>= 3.9.0-4) on python3-h5py. This
version of h5py contains a fallback mechanisms in both cases, when
either python3-h5py-serial or python3-h5py-mpi are absent from the
system.
- Suggests libhdf5-mpi-dev and python3-h5py-mpi
-- Rafael Laboissière <rafael@debian.org> Fri, 13 Oct 2023 12:56:19 -0300
xmds2 (3.1.0+dfsg2-6) unstable; urgency=medium
* d/control: Depend and Build-Depend on both libhdf5-dev and libhdf5-mpi-dev
-- Rafael Laboissière <rafael@debian.org> Tue, 10 Oct 2023 07:40:04 -0300
xmds2 (3.1.0+dfsg2-5) unstable; urgency=medium
* Fix dependencies on h5py
+ d/control:
- Build-depend on python3-h5py
- Depend on libhdf5-mpi-dev
+ d/p/h5py-always-use-mpi.patch: New patch
Thanks to Drew Parsons for the suggestions and Nilesh Patra for the
discussion. (Closes: #1053314)
-- Rafael Laboissière <rafael@debian.org> Sun, 08 Oct 2023 14:24:24 -0300
xmds2 (3.1.0+dfsg2-4) unstable; urgency=medium
* d/p/deterministic-id.patch: Fix typo in Forwarded field
* Use OpenBLAS or BLIS instead of ATLAS
+ d/control: Depend and build-depend on libopenblas-dev |
libblis-dev instead of libatlas-base-dev
+ d/p/vanilla-cblas.patch: New patch
* d/control: Bump Standards-Version to 4.6.2 (no changes needed)
* d/fix-cheetah-build-str.py:
+ Apply standard code conventions
+ Use `with` for resource-allocating operation
+ Specify UTF-8 encoding when opening files
+ Use f-strings instead of % operator
* d/copyright: Update copyright year of debian/* files
-- Rafael Laboissière <rafael@debian.org> Mon, 17 Jul 2023 19:11:41 -0300
xmds2 (3.1.0+dfsg2-3) unstable; urgency=medium
* d/p/numpy-asscalar.patch: New patch (Closes: #1026350)
* d/clean: Remove _pygments/__pycache__ directory
-- Rafael Laboissière <rafael@debian.org> Tue, 20 Dec 2022 14:19:54 -0300
xmds2 (3.1.0+dfsg2-2) unstable; urgency=medium
* Automate the generation of the orig-userdoc upstream tarball
-- Rafael Laboissière <rafael@debian.org> Mon, 05 Dec 2022 13:03:46 -0300
xmds2 (3.1.0+dfsg2-1) unstable; urgency=medium
* New repackaged upstream version 3.1.0+dfsg2
* d/control:
+ Update X-Python3-Version field
+ Bump Standards-Version to 4.6.1 (no changes needed)
+ Make package xmds2-doc Multi-Arch: foreign
* d/s/lintian-overrides: Update overrides for new version of Lintian
* d/copyright:
+ Exclude documentation directory from tarball and update
Copyright notices for userdoc directory
+ Update Copyright years for debian/* files
+ Drop unused entries for JavaScript libraries
* d/p/pygments-style-lexer.patch: New patch
* d/p/extra-alignment-tab.patch: New patch
* d/rules:
+ Build user documentation from source
+ Create symlink for file language_data.js
+ Do not compress file xmds_favicon.ico
* d/control: Build-depend on packages needed for building the documentation
* d/README.source: New scheme for building the documentation
* d/s/lintian-overrides: Drop unused override for prebuiltsphinx doc
* d/xmds2-doc.docs: Install *.js files in xmds2-doc package
-- Rafael Laboissière <rafael@debian.org> Fri, 04 Nov 2022 13:00:49 -0300
xmds2 (3.1.0+dfsg-3) unstable; urgency=medium
* Reintroduce unit test involving Octave
* d/s/lintian-overrides: Add override for
very-long-line-length-in-source-file warnings
-- Rafael Laboissière <rafael@debian.org> Tue, 02 Nov 2021 03:47:20 -0300
xmds2 (3.1.0+dfsg-2) unstable; urgency=medium
* d/copyright: Update Copyright years
* d/s/lintian-overrides: Add override for license-problem-gfdl-invariants false positive
-- Rafael Laboissière <rafael@debian.org> Mon, 25 Oct 2021 02:03:41 -0300
xmds2 (3.1.0+dfsg-1) unstable; urgency=medium
* New upstream version 3.1.0+dfsg
* d/watch: Add repacksuffix option
* d/copyright: Drop files removed from new upstream tarball
* Drop patch (applied upstream)
+ d/p/compile-with-python3.patch
+ d/p/is-operator-syntax-warning.patch
+ d/p/h5py-value-deprecation.patch
+ d/p/non-ambiguous-global-variables.patch
* d/rules: Drop code for removing __pycache__ directories before
dh_installdeb
-- Rafael Laboissière <rafael@debian.org> Sun, 24 Oct 2021 12:10:24 -0300
xmds2 (3.0.0+dfsg-6) unstable; urgency=medium
* d/control:
+ Build-depend on python3:any
+ Bump Standards-Version to 4.6.0 (no changes needed)
* d/copyright: Update copyright year for debian/* files
* d/p/non-ambiguous-global-variables.patch: New patch (Closes: #996279)
* Temporarily disable the unit test involving Octave.
The octave package is not installable in unstable right now, due to
problems in current library transitions. The unit test in
d/t/run-tests is commented out and the dependencies on octave are
dropped.
-- Rafael Laboissière <rafael@debian.org> Sat, 23 Oct 2021 14:38:24 -0300
xmds2 (3.0.0+dfsg-5) unstable; urgency=medium
* d/control: Bump Standards-Version to 4.5.1 (no changes needed)
* d/rules:
+ Do not run unit tests on ppc64el (Closes: #976950)
+ Use execute_(before|after)_dh_* targets instead of override_dh_*
-- Rafael Laboissière <rafael@debian.org> Sat, 02 Jan 2021 07:30:56 -0300
xmds2 (3.0.0+dfsg-4) unstable; urgency=medium
* d/control:
+ Bump debhelper compatibitlity level to 13
+ Depends on libjs-sphinxdoc
* d/u/metadata: Drop Name and Contact fields
* Set Forwarded field to not-needed:
+ d/p/decrease-mpirun-slots.patch
+ d/p/deterministic-id.patch
+ d/p/no-generation-timestamps.patch
* Use the system-installed JavaScript libraries
+ d/control: Build-depends on libjs-{jquery,underscore,sphinxdoc}
+ d/rules: Symlink to the appropriate *.js files
-- Rafael Laboissière <rafael@debian.org> Fri, 31 Jul 2020 12:01:01 -0300
xmds2 (3.0.0+dfsg-3) unstable; urgency=medium
* d/control:
+ Build-depend and depend on python3-h5py-mpi (Closes: #938925)
+ Bump Standards-Version to 4.5.0 (no changes needed)
* d/u/metadata: Add fields Bug-Submit, Repository, and Repository-Browse
* d/p/is-operator-syntax-warning.patch: New patch
* d/rules: Unset execute permission of wscript file.
This complies with FHS 3.0, which specifies that files in /usr/lib
should not be executable.
* d/p/wscritp-no-shebang-line.patch: New patch
* d/p/h5py-value-deprecation.patch: New patch
-- Rafael Laboissière <rafael@debian.org> Mon, 30 Mar 2020 05:01:43 -0300
xmds2 (3.0.0+dfsg-2) unstable; urgency=medium
* Upload to unstable
-- Rafael Laboissiere <rafael@debian.org> Sun, 07 Jul 2019 19:19:03 -0300
xmds2 (3.0.0+dfsg-1) experimental; urgency=medium
* New upstream version 3.0.0+dfsg
-- Rafael Laboissiere <rafael@debian.org> Tue, 21 May 2019 11:37:25 -0300
xmds2 (2.3.0~rc1+dfsg-2) experimental; urgency=medium
* d/p/compile-with-python3.patch: New patch (Closes: #929148)
-- Rafael Laboissiere <rafael@debian.org> Sun, 19 May 2019 08:11:13 -0300
xmds2 (2.3.0~rc1+dfsg-1) experimental; urgency=medium
* New upstream version 2.3.0~rc1+dfsg
* d/copyright: Adjust list of files excluded from DFSG tarball
* Refresh patches for new upstream version:
+ d/p/decrease-mpirun-slots.patch
+ d/p/no-parallel-waf-build.patch
+ d/p/revision-number-as-deb-pkg.patch
* d/control: Adjust dependencies for Python 3
* d/rules:
+ Use Python 3
+ Remove __pycache__ directories from binary package
* d/clean: Remove Waf generated files
-- Rafael Laboissiere <rafael@debian.org> Sat, 11 May 2019 06:37:30 -0300
xmds2 (2.2.3+dfsg-15) unstable; urgency=medium
* d/p/no-parallel-waf-build.patch: New patch
-- Rafael Laboissiere <rafael@debian.org> Sat, 19 Jan 2019 18:13:40 -0200
xmds2 (2.2.3+dfsg-14) unstable; urgency=medium
* d/p/deterministic-id.patch: New patch
-- Rafael Laboissiere <rafael@debian.org> Fri, 18 Jan 2019 11:10:50 -0200
xmds2 (2.2.3+dfsg-13) unstable; urgency=medium
* Avoid unreproducible strings in Cheetah generated files
+ d/fix-cheetah-build-str.py: Set the srcLastModified string to the
date in d/changelog. Also, remove the obsolete setting of the
genTime* variables.
+ d/p/no-generation-timestamps.patch: New patch for adding the
addTimestampsToCompilerOutput compiler option.
-- Rafael Laboissiere <rafael@debian.org> Wed, 16 Jan 2019 15:47:06 -0200
xmds2 (2.2.3+dfsg-12) unstable; urgency=medium
* d/control: Bump debhelper compat level to 12
* d/control: Bump Standards-Version to 4.3.0 (no changes needed)
* d/p/decrease-mpirun-slots.patch: Extend the reduction of number of
mpirun slots to a large numvber of unit tests.
-- Rafael Laboissiere <rafael@debian.org> Thu, 10 Jan 2019 12:59:25 -0200
xmds2 (2.2.3+dfsg-11) unstable; urgency=medium
* d/control:
+ Build-depend on python-scipy
+ Add Rules-Requires-Root: no
+ Bump Standards-Version to 4.2.1 (no changes needed)
* d/p/decrease-mpirun-slots.patch: New patch
* d/t/run-tests: Honor DEB_BUILD_OPTIONS=terse
-- Rafael Laboissiere <rafael@debian.org> Sun, 02 Sep 2018 05:36:11 -0300
xmds2 (2.2.3+dfsg-10) unstable; urgency=medium
* d/t/control: Add dependency on fonts-freefont-otf
-- Rafael Laboissiere <rafael@debian.org> Sat, 23 Jun 2018 17:59:37 -0300
xmds2 (2.2.3+dfsg-9) unstable; urgency=medium
* Build-depend on fonts-freefont-otf.
Ensure that the plotting commands in unit test lorenz.m (Octave code)
will work in an auto-build/autopkgtest environment.
* Use correct version numbers in X-Python-Version header.
Only versions present from oldstable until unstable are allowed in
this field.
* Proper dependencies on python-cheetah.
The templates on which xmds2 is based need recompilation for each
major version of the Cheetah engine. We enforce now a strict
dependency on the major of Cheetah with which the package is built.
-- Rafael Laboissiere <rafael@debian.org> Sat, 23 Jun 2018 05:23:53 -0300
xmds2 (2.2.3+dfsg-8) unstable; urgency=medium
* Add versioned (automatically generated) dependency on python-cheetah
-- Rafael Laboissiere <rafael@debian.org> Wed, 20 Jun 2018 21:52:43 -0300
xmds2 (2.2.3+dfsg-7) unstable; urgency=medium
* d/t/run-tests: Define OMPI_MCA_rmaps_base_oversubscribe.
This variable was previously defined in d/rules and the setting was
not taken into account by autokgtest at the Debian CI infrastructure.
-- Rafael Laboissiere <rafael@debian.org> Sun, 06 May 2018 15:15:14 -0300
xmds2 (2.2.3+dfsg-6) unstable; urgency=medium
* Migrate get-orig-source into debian/watch
* d/control: Bump Standards-Version to 4.1.4
* d/rules:
+ Oversubscribe nodes for MPI unit tests (Closes: 897501)
+ Honor DEB_BUILD_OPTIONS in target override_dh_auto_test
-- Rafael Laboissiere <rafael@debian.org> Fri, 04 May 2018 03:33:06 -0300
xmds2 (2.2.3+dfsg-5) unstable; urgency=medium
* d/control: Build-depend on libhdf5-dev instead of transitional
libhdf5-serial-dev (Closes: 879150)
-- Rafael Laboissiere <rafael@debian.org> Mon, 08 Jan 2018 18:07:16 -0200
xmds2 (2.2.3+dfsg-4) unstable; urgency=medium
* Use debhelper compatibility level 11
* d/xmds2-doc.doc-base: Use new (debhelper compat 11) paths for files
* d/control:
+ Bump Standards-Version to 4.1.3 (no changes needed)
+ Use Debian's GitLab URLs in Vcs-* headers
-- Rafael Laboissiere <rafael@debian.org> Thu, 28 Dec 2017 16:54:06 -0200
xmds2 (2.2.3+dfsg-3) unstable; urgency=medium
* d/control: Use cgit URL in Vcs-Browser
* d/u/metadata: Fix FAQ URL
* d/control: Bump Standards-Version to 4.1.1 (no changes needed)
* Add support for autopkgtest
* d/clean: New file
-- Rafael Laboissiere <rafael@debian.org> Sat, 07 Oct 2017 04:03:47 -0300
xmds2 (2.2.3+dfsg-2) unstable; urgency=medium
* d/copyright: Use secure URL in Format
* d/watch: Upgrade to version 4
* d/control: Bump Standards-Version to 4.0.0 (no changes needed)
* Ensure reproducible build
+ d/fix-cheetah-build-str.py: New script for replacing
timestamp and build paths generated by Cheetah
+ d/control: Build-depends on python-debian and python-dateutil
+ d/rules: Call fix-cheetah-build-str.py in the
override_dh_auto_install rule
-- Rafael Laboissiere <rafael@debian.org> Thu, 29 Jun 2017 17:48:08 -0300
xmds2 (2.2.3+dfsg-1) unstable; urgency=medium
* New upstream version 2.2.3+dfsg
* d/copyright: Reflect upstream changes
* Drop patch (applied upstream):
+ d/p/spelling-fix-in-manpage.patch
+ d/p/pyparsing-dict.patch
+ d/p/indexing-with-scalars.patch
* d/s/lintian-overrides: Drop unused Lintian overrides
* d/rules: Run unit tests in verbose mode
-- Rafael Laboissiere <rafael@debian.org> Fri, 03 Feb 2017 18:49:15 -0200
xmds2 (2.2.2+dfsg-3) unstable; urgency=medium
* Bump debhelper compat level to 10
* Bump Standards-Version to 3.9.8 (no changes needed)
* d/watch: Avoid listing the xmds-doc tarballs
* d/u/metadata: Add citation
* d/s/lintian-overrides: Refresh for new Lintian behavior
* d/control: Use secure URIs in VCS fields
* d/p/spelling-fix-in-manpage.patch: New patch
* d/p/pyparsing-dict.patch: New patch
* d/p/indexing-with-scalars.patch: New patch
-- Rafael Laboissiere <rafael@debian.org> Sun, 15 Jan 2017 18:05:09 -0200
xmds2 (2.2.2+dfsg-2) unstable; urgency=medium
* d/control:
+ Update to ligsl-dev in Build-Depends and Depends
+ Add dh-python and gnuplot-nox to Build-Depends
-- Rafael Laboissiere <rafael@laboissiere.net> Wed, 16 Dec 2015 10:36:26 +0100
xmds2 (2.2.2+dfsg-1) unstable; urgency=low
* Imported Upstream version 2.2.2+dfsg
* d/watch: Mangle RC part of upstream tarball name
-- Rafael Laboissiere <rafael@laboissiere.net> Tue, 14 Oct 2014 07:05:55 -0300
xmds2 (2.2.1+dfsg-1) unstable; urgency=low
* Imported Upstream version 2.2.1+dfsg
* Add python-mpmath and python-scipy to Suggests
* Drop patch parse-dep-relationship.patch (fixed in python-minimal 2.7.8-1)
* Drop patch remove-non-dfsg-code.patch (applied upstream)
* Drop patch show-library-name.patch (applied upstream)
* Drop patch wscript-hdf5.patch (applied upstream)
-- Rafael Laboissiere <rafael@laboissiere.net> Tue, 30 Sep 2014 22:06:15 -0300
xmds2 (2.2.0+dfsg1-4) unstable; urgency=low
* Link against installed versions of files underscore.js and jquery.js.
The xmds2-doc package now depends on libjs-jquery and
libjs-underscore, complying with section 4.13 of the Debian Policy.
* debian/patches/show-library-name.patch: New patch
* Bump to Standards-Version 3.9.6, no changes needed
* wscript-hdf5.patch: New patch for getting the correct flags for HDF5.
Thanks to Gilles Filippini
* d/copyright: Specify BSD licenses
* Replace hyperlinks to Mathjax website by local ones in libjs-mathjax
-- Rafael Laboissiere <rafael@laboissiere.net> Sun, 21 Sep 2014 12:18:57 -0300
xmds2 (2.2.0+dfsg1-3) unstable; urgency=medium
* Support hdf5 1.8.13 new packaging layout.
Thanks to Gilles Filippini for the patch (Closes: 756702)
-- Rafael Laboissiere <rafael@laboissiere.net> Sat, 02 Aug 2014 10:17:24 +0200
xmds2 (2.2.0+dfsg1-2) unstable; urgency=medium
* Team upload.
[ Rafael Laboissiere ]
* debian/source/options: Add diff-ignore options for dpkg-source
* Install only *.xmds files in the example directory
* Add dependency on python-pkg-resources
* Override Lintian errors on missing sources for some *.js files
* Do not use Xvfb to run the lorenz example with Octave
-- Sébastien Villemot <sebastien@debian.org> Wed, 09 Apr 2014 20:04:29 +0200
xmds2 (2.2.0+dfsg1-1) unstable; urgency=medium
* Team upload.
[ Rafael Laboissiere ]
* Imported Upstream version 2.2.0+dfsg1
In this new tarball, the automatically built file
VectorInitialisationFromXSIL.py is removed, because it contains
DFGS-incompatible code.
* debian/copyright: Include the above file in the Files-Excluded list
-- Sébastien Villemot <sebastien@debian.org> Sun, 02 Feb 2014 09:14:27 +0100
xmds2 (2.2.0+dfsg-1) unstable; urgency=medium
* Team upload.
[ Rafael Laboissiere ]
* Imported Upstream version 2.2.0+dfsg
* Make the package DFSG-compliant (Closes: #736413):
+ debian/copyright Drop non-GFDL documentation files from the tarball
+ The tarball is now repacked (hence the "+dfsg" suffix in the upstream
version number)
+ debian/watch: Change uscan rule accordingly, for mangling the
"+dfsg" suffix in the upstream tarball name
+ debian/patches/remove-non-dfsg-code.patch: New patch for removing
non-dfsg code in VectorInitialisationFromXSIL.tmpl
+ debian/copyright: Specify the licenses of files in
documentation/_static
* Also, drop from the upstream tarball the *.jar and *.pyc files, which
are automatically built (Lintian warning)
-- Sébastien Villemot <sebastien@debian.org> Thu, 30 Jan 2014 23:09:43 +0100
xmds2 (2.2.0-1) unstable; urgency=medium
* Team upload.
[ Rafael Laboissiere ]
* debian/patches/revision-number-as-deb-pkg.patch: New patch.
This patch inserts the Debian package number in the notice shown by
xmds2 and xsil2graphics2 at launching.
* Imported Upstream version 2.2.0
* Drop patches (applied upstream):
+ interpreter-name-in-shebang.patch
+ operator-bashism.patch
+ drop-dependency-on-sphinx.patch
+ string-quote-in-run-tests.patch
* Add package xmds2-doc, with HTML and PDF forms of user documentation
* debian/copyright: Reflect upstream changes
* Drop dependencies on Cheetah, pyparsing and mpmath (guessed by dh_python2)
* Drop useless dependency on python-setuptools
* Use the appropriate version range in X-Python-Version
* debian/patches/parse-dep-relationship.patch: New patch
-- Sébastien Villemot <sebastien@debian.org> Wed, 15 Jan 2014 20:41:10 +0100
xmds2 (2.1.4-1) unstable; urgency=low
[ Rafael Laboissiere ]
* Initial version for Debian (Closes: #597014, #734262)
* debian/source/format: 3.0 (quilt)
* debian/control:
+ Add mandatory build-dependency on python
+ Declare package to be architecture-independent
+ Drop unused build-dependency on cdbs
+ Drop useless dependencies on python-markdown
+ Drop ${shlibs:Depends} (this is an arch:all package)
+ Bump Standards-Version to 3.9.5
+ Declare the Debian Science Team as the maintainer
+ Use XS-Python-Version instead of deprecated XB-Python-Version
+ Drop duplicated dependency on python-pyparsing
+ Set Section to "science" and Priority to "extra"
+ Add Vcs-{Git,Browser} fields
+ Add paragraph to the Description field about the differences to xmds v1
+ Add dependency to libfftw3-mpi-dev and libgsl0-dev
+ Replace dependencies on mpich2 by mpi-default-{dev,bin}
+ Build-depend on all run-time dependencies, such that the unit test
suite works
+ Add my name to the list of Uploaders
* debian/rules:
+ Remove the build directory in the clean rule
+ Run the lorenz.xmds example as unit test
+ Run the unit test suite run_tests.py
* debian/watch: Add file for uscan
* Bump the debhelper compatibility level to 9
* debian/copyright:
+ DEP-5-compliant
+ Add licenses for third-party software (waf, dSFMT, and Solirte)
* debian/docs: Drop the COPYRIGHT file (redundant with debian/copyright)
* New patch interpreter-name-in-shebang.patch
* New patch operator-bashism.patch
* New patch drop-dependency-on-sphinx.patch
* New patch string-quote-in-run-tests.patch
[ Andreas Tille ]
* debian/control: Priority: optional
* cme fix dpkg-copyright
-- Rafael Laboissiere <rafael@laboissiere.net> Wed, 08 Jan 2014 10:17:41 +0100
xmds2 (2.1.2-1-20121121) wheezy-evmik; urgency=low
* Debianization
-- Eugeniy Mikhailov <evgmik@gmail.com> Wed, 21 Nov 2012 15:11:20 -0500