cufflinks (2.2.1+dfsg.1-10) unstable; urgency=medium
* Team upload.
* gcc14.patch: new: fix build failure with gcc14. (Closes: #1078141)
* d/control: declare compliance to standards version 4.7.0.
-- Étienne Mollier <emollier@debian.org> Tue, 27 Aug 2024 22:54:20 +0200
cufflinks (2.2.1+dfsg.1-9) unstable; urgency=medium
* Fix autoconf issue
Closes: #998241
* Enable build using gcc-11 by forcing -std=c++14
* Remove redundant debian/gbp.conf
* Standards-Version: 4.6.0 (routine-update)
* cme fix dpkg-control
-- Andreas Tille <tille@debian.org> Mon, 08 Nov 2021 14:18:10 +0100
cufflinks (2.2.1+dfsg.1-8) unstable; urgency=medium
[ Reiner Herrmann ]
* fix FTBFS with GCC 10
Closes: #966191
[ Andreas Tille ]
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Use secure URI in Homepage field.
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* Remove obsolete field Name from debian/upstream/metadata (already present in
machine-readable debian/copyright).
-- Andreas Tille <tille@debian.org> Sun, 02 Aug 2020 10:02:34 +0200
cufflinks (2.2.1+dfsg.1-7) unstable; urgency=medium
* Team upload
* Actually launch dh with --python3
-- Gianfranco Costamagna <locutusofborg@debian.org> Fri, 21 Feb 2020 16:31:57 +0100
cufflinks (2.2.1+dfsg.1-6) unstable; urgency=medium
* Team upload
* cherry-pick Ubuntu patch from <doko> to use dh-python and
correctly evaluate runtime dependencies
-- Gianfranco Costamagna <locutusofborg@debian.org> Fri, 21 Feb 2020 16:06:30 +0100
cufflinks (2.2.1+dfsg.1-5) unstable; urgency=medium
[ Steffen Möller ]
* Update metadata with ref to conda
[ Alexandre Mestiashvili ]
* Introduce patch converting cuffmerge to python3,
Thanks to Cheng H. Lee, Closes: #936351, #942930
* d/control: s/python/python3/g, bump Policy to 4.5.0
-- Alexandre Mestiashvili <mestia@debian.org> Sat, 08 Feb 2020 18:50:33 +0100
cufflinks (2.2.1+dfsg.1-4) unstable; urgency=medium
[ Valentin Marcon ]
* Correct DOI
[ Alexandre Mestiashvili ]
* Drop gffread binary, add gffread package to Recommends in d/control
Closes: #934600
* Switch to debhelper-compat, bump Policy to 4.4.0, update Uploader's
email address
* Add README.Debian, explaining why gffread is removed from cufflinks
-- Alexandre Mestiashvili <mestia@debian.org> Tue, 20 Aug 2019 17:51:28 +0200
cufflinks (2.2.1+dfsg.1-3) unstable; urgency=medium
* XS-Autobuild: yes
* d/rules: no manual inforcement of compression which is default
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
-- Andreas Tille <tille@debian.org> Thu, 18 Oct 2018 15:30:41 +0200
cufflinks (2.2.1+dfsg.1-2) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata:
- Added references to software catalogues.
- yamllint cleanliness
[ Alexandre Mestiashvili ]
* Add patch fixing FTBFS with upcoming boost1.65+, Closes: #880375
thanks to Dimitri John Ledkov <xnox@ubuntu.com>
* Bump Standards-Version to 4.1.1
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Thu, 02 Nov 2017 09:48:09 +0100
cufflinks (2.2.1+dfsg.1-1) unstable; urgency=medium
[ Mattia Rizzolo ]
* add a closes to the previous changelog entry
[ Alexandre Mestiashvili ]
* Update d/watch
* Update d/copyright, add Files-Excluded section,
use https for copyrigth-format, add Upstream-Name
* New upstream version 2.2.1+dfsg.1
* Update d/rules, use variables provided by /usr/share/dpkg/default.mk
* Add patch fixing ftbfs with gcc-7, Closes: #871234
thanks to Jeff Epler <jepler@unpythonic.net>
* Update 0003-fix_includes_path.patch and 0001-fix_spelling.patch
* Bump Standards-Version in d/control
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Tue, 05 Sep 2017 23:42:17 +0200
cufflinks (2.2.1-3) unstable; urgency=medium
* Use unversioned libboost. (Thanks for the hint to Gianfranco Costamagna)
Closes: 833760
* Fix gcc-6.1 build issue caused by an unmaintained code copy of liblemon.
Thanks for the hint to Graham Inggs <ginggs@debian.org>
Closes: #833493
-- Andreas Tille <tille@debian.org> Tue, 16 Aug 2016 13:46:04 +0200
cufflinks (2.2.1-2) unstable; urgency=medium
* Watch file pointing to Github
* cme fix dpkg-control
* Use libboost 1.60
Closes: #797280, #822121
* hardening=+all
-- Andreas Tille <tille@debian.org> Tue, 12 Jul 2016 14:12:45 +0200
cufflinks (2.2.1-1) unstable; urgency=medium
* d/control: cme fix dpkg-control
* Imported Upstream version 2.2.1
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Fri, 16 May 2014 16:59:52 +0200
cufflinks (2.2.0-1) unstable; urgency=medium
[ James McCoy ]
* Move debian/upstream to debian/upstream/metadata
[ Alexandre Mestiashvili ]
* Imported Upstream version 2.2.0
* d/rules:
- link to the serialization library "-lboost_serialization"
- generate man pages automatically with help2man
- separate rule for manpage for gffread as it doesn't return usage
message when executed without arguments
* d/control:
- use canonical VCS-* fields
- updated Standards-Version
- Build-Depends: add help2man
* d/patches/gffread_show_usage.patch: fix wrong USAGE indentation causing
buffer overflow in gffread when using -h, --help and some other arguments
* d/*.1: removed obsoleted manpages
* d/copyright: updated Source, Copyright years
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Fri, 11 Apr 2014 13:12:25 +0200
cufflinks (2.1.1-4) unstable; urgency=low
* Force use boost_system, boost_thread when linking. Fixing FTBFS in
ubuntu.
* Enable parallel build.
-- Dmitrijs Ledkovs <xnox@ubuntu.com> Wed, 23 Oct 2013 16:30:40 +0100
cufflinks (2.1.1-3) unstable; urgency=low
* Rebuild against boost1.54.
-- Dmitrijs Ledkovs <xnox@debian.org> Sat, 07 Sep 2013 17:10:26 +0100
cufflinks (2.1.1-2) unstable; urgency=low
* Fix failing to build from source against boost1.53. (Closes: #709252)
-- Dmitrijs Ledkovs <xnox@debian.org> Thu, 23 May 2013 01:05:02 +0100
cufflinks (2.1.1-1) unstable; urgency=low
[Carlos Borroto]
* New upstream release.
* Added libeigen3-dev to build-deps.
* Modified fix_includes_path to properly include Eigen library.
* Bumped libboost-dev requirement to >= 1.47.0
[ Alexandre Mestiashvili ]
* Imported debian/patches/0004-fix-m64-usage-and-lfs.patch, Closes: #675985
[ Andreas Tille ]
* Upstream release 2.1.1 (+ adapted patches)
Closes: #687968
* debian/control:
- Removed: DM-Upload-Allowed
- Standards-Version: 3.9.4
- Debhelper 9 (also d/compat)
requires d/p/format-security.patch for hardening via --format-security
- normalised format
-- Andreas Tille <tille@debian.org> Wed, 22 May 2013 13:27:40 +0200
cufflinks (1.3.0-2) unstable; urgency=low
[ Charles Plessy ]
* Normalised and summarised debian/copyright.
[ Carlos Borroto ]
* Added tophat to Enhances
[ Andreas Tille ]
* debian/upstream: Added references as specified in tasks file
* debian/copyright: Added Upstream-Contact e-mail
* debian/patches/gcc-4.7.patch: Fix gcc-4.7 build issue
Closes: #672744
-- Charles Plessy <plessy@debian.org> Thu, 24 May 2012 12:36:16 +0900
cufflinks (1.3.0-1) unstable; urgency=low
[ Alexandre Mestiashvili ]
* New upstream release
* Fixed spelling error.
* Updated source version
[ Charles Plessy ]
* Removed quilt patch management, and rely on dpkg-dev exclusively.
-- Charles Plessy <plessy@debian.org> Fri, 06 Jan 2012 09:20:23 +0900
cufflinks (1.2.1-1) unstable; urgency=low
[ Alexandre Mestiashvili ]
* New upstream release
* added patch to fix bam.h location .
* debian/rules invoke autoreconf
* debian/rules added overrides for dh_auto_clean and dh_clean
* added missing dependency - quilt .We use dh_quilt_patch,
dh_quilt_unpatch helpers
* debian/control added dependency python (>=2.6.6-3~) for source package
* debian/control added dependency python (>=2.6.6-3~) for binary package
[ Andreas Tille ]
* Added myself to uploaders
* Debhelper 8 (control+compat)
* debian/watch: removed dh-make template from watch file
* debian/rules: invoke autotools_dev
[ Charles Plessy ]
* Switch to non-free section because of the locfit license (debian/control).
* Added myself to Uploaders (debian/control).
* Compress binary package with xz (debian/rules).
* Pre-depend on dpkg (>= 1.15.6) for xz compression (Ubuntu LTS).
-- Charles Plessy <plessy@debian.org> Sun, 11 Dec 2011 12:07:02 +0900
cufflinks (1.0.3-1) UNRELEASED; urgency=low
[ Alex Mestiashvili ]
* added docs
* added missing dependency
* libbam-dev provides necessary headers only from 0.1.16 version .
Fixed in control file.
[ Charles Plessy ]
* Add debian/gbp.conf to show the package is managed with git-buildpackage.
* Converted Debian copyright file to machine-readable format (DEP 5).
* Reviewed copyright and license notices, and found that locfit is non-free…
[ Alex Mestiashvili ]
* Imported Upstream version 1.0.3 (bugfix)
-- Alex Mestiashvili <alex@biotec.tu-dresden.de> Wed, 08 Jun 2011 06:31:10 +0000
cufflinks (1.0.2-1) UNRELEASED; urgency=low
* Initial release (Closes: #627799)
-- Alex Mestiashvili <alex@biotec.tu-dresden.de> Tue, 24 May 2011 13:43:09 +0200