fsl (5.0.8-6) unstable; urgency=medium * Team upload. [ Yaroslav Halchenko ] * Add 'file' to Depends of fsl-5.0-core. Required by fslFixText utility * debian/fsl.sh - place FSL's bin path first (not the last) within adjusted $PATH (Closes: #804881) * debian/patches/up_in_compar to fix FTBFS of melodic on 17.04 Closes: #837361 [ Michael Hanke ] * Move 'fslview' from a dependency into suggests. It can no longer be built in Debian unstable. Closes: #864178 [ Andreas Tille ] * Replace watch line pointing to alioth which does not exist any more by fake watch file * debhelper 9 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.3.0 * Fix call of overloaded 'round(float)' is ambiguous * Silence lintian about false positive spelling * fsl-5.0-core Depends: sensible-utils * Drop Encoding key from desktop file * Drop Debian menu file (since there is a desktop file) * hardening=+all -- Andreas Tille Tue, 15 Jan 2019 16:42:15 +0100 fsl (5.0.8-5) unstable; urgency=medium * Disable unecessary unportable debugging code that breaks on kfreebsd. -- Michael Hanke Fri, 21 Aug 2015 11:43:25 +0200 fsl (5.0.8-4) unstable; urgency=medium * Remove versioned dependencies on transitional packages libgd2-(no)xpm-dev in favor of a dependency on libgd-dev (Closes: #792291). Thanks to Mattia Rizzolo for the report. * Add patch to force FSL to use its own modified version of the BWidget TCL package. This prevents incompatibility issues if a system-wide BWidget installation is found (Closes: #792758). The "fix" forces a version requirement on BWidget 1.8 (matches embedded version, Debian has 1.9.x as of now). This is not ideal, but a minimally intrusive change that achieves the desired behavior. Thanks to Vincent Kersten for the report. * Move upstream meta data to debian/upstream/metadata. * Drop embeded excanvas javascript library in favor of a dependency on libjs-excanvas. -- Michael Hanke Mon, 17 Aug 2015 11:30:18 +0100 fsl (5.0.8-3) UNRELEASED; urgency=medium * fsl_app_wrapper - wrap $@ into "" to pass arguments correctly into original utility -- Yaroslav Halchenko Wed, 04 Mar 2015 08:44:03 -0500 fsl (5.0.8-2) experimental; urgency=medium * Include upstream patch to prevent a crash in the FEAT component. -- Michael Hanke Fri, 16 Jan 2015 19:11:28 +0100 fsl (5.0.8-1) unstable; urgency=medium * New upstream release. - New command 'fslselectvols' to select a (non-contiguous) subset of volumes from a 4D image. - New '-kernel boxv3' option for fslmaths. - New '--minextent' option for cluster. - Bugfix for header information of topup output files. - FEAT has improved handling of non-fatal error conditions. - Bugfix for asl_calib script. - Bugfix for missing images in the VIENA report. - All FSL scripts now internally set their locale to C. - A potential race condition with multiple calls to maskdyads or slices has been corrected. - FDR now saves adjusted values as 1-p if the input is 1-p. * Refresh patches and remove one resolved bashism fix. -- Michael Hanke Sun, 21 Dec 2014 10:39:15 +0100 fsl (5.0.7-4) unstable; urgency=medium * Fix FTBFS on kfreebsd: Disable 'stack_dump' component that is "highly non-portable" and can be replaced, if necessary, with plain gdb. * Fix another bashism in the *monitor script generated by bedpostx. -- Michael Hanke Wed, 23 Jul 2014 08:01:53 +0200 fsl (5.0.7-3) unstable; urgency=medium * Improve FSL's build configuration to not treat any non-Linux platform as a Mac (Closes: #755356). -- Michael Hanke Sun, 20 Jul 2014 11:36:26 +0200 fsl (5.0.7-2) unstable; urgency=low * Add a patch to make randomise_parallel work on systems that do not have bash as their default shell (Closes: #693373). Thanks to Philip Chase for the patch. * Add a patch to honor an unset FSLPARALLEL (do not submit jobs to a cluster) even in cases where SGE_ROOT is set (Closes: #685757). Thanks to German Gomez-Herrero for the patch. * Sanitize PATH and LD_LIBRARY_PATH when sourcing the configuration file. Old/duplicate FSL path entries are now removed (Closes: #695257). Thanks to Vincent Kersten for the patch. -- Michael Hanke Thu, 17 Jul 2014 15:44:44 +0200 fsl (5.0.7-1) unstable; urgency=medium * New upstream release. - new component: gps * Remove the documentation from the source package due to a number of files with unclear origin and license. Consequently, the -doc has been removed as well. Upstream confirms that documentation is best consumed from the live wiki on the project homepage. * Move the -gpu package setup into a patch that can be applied to backports to particular releases. The current Debian unstable doesn't have a functional nvcc and it is i386 and amd64 only anyway. * Cleanup and remove old and merged patches. * Bumped Standard version to 3.9.5 -- no changes necessary. -- Michael Hanke Fri, 11 Jul 2014 17:22:13 +0200 fsl (5.0.6-2) unstable; urgency=medium [ Yaroslav Halchenko ] * debian/control - limit build-depends on nvidia-cuda-toolkit only for x86 architectures [ Michael Hanke ] * Add libpng-dev as an alternative build-dependency to libpng12-dev (Closes: #662337). * Switch dependencies to plain tcl and tk packages (from tcl8.4/tk8.4). This acknowledges the NMU of fsl-4.1 by Sergei Golovan to fix #737187. -- Michael Hanke Mon, 14 Apr 2014 19:00:40 +0200 fsl (4.1.9-7.2) unstable; urgency=low * Non-maintainer upload. * Really replaced tcl8.4 and tk8.4 by tcl and tk in the package dependencies (Closes: #737187). -- Sergei Golovan Sat, 15 Mar 2014 21:03:23 +0400 fsl (4.1.9-7.1) unstable; urgency=low * Non-maintainer upload. * Replaced tcl8.4 and tk8.4 by tcl and tk in the package dependencies (Closes: #737187). -- Sergei Golovan Fri, 31 Jan 2014 22:19:04 +0400 fsl (5.0.6-1) neurodebian; urgency=low * New upstream bugfix release: - An error with voxelwise regressors in lower-level FEAT introduced in FSL 5.0.5 has been fixed. It is stringly recommend to re-run any lower-level FEAT analysis that used voxelwise regressors (e.g. PNM) generated with FSL 5.0.5. - Bugfixes for POSSUM and the ASL GUI. * Downgrade -doc dependency on wikiattachments package from recommended to suggested. -- Michael Hanke Fri, 01 Nov 2013 18:16:59 +0100 fsl (5.0.5-1) neurodebian; urgency=low * New upstream release. - Bedpostx is now CUDA capable for GPU-equipped clusters. - Bedpostx now has a gradient non-linearity option. - Probtrackx2 can now output an ROIxROI network matrix. - Several bugfixes for MELODIC. - Multishell qboot bugfix. * Re-add dependency on fslview and re-add symlinks (originally removed in 4.1.9-1). * Add new package fsl-5.0-gpu for the new GPU-accelerated FSL tools. * Remove doc wiki attachments from the main source tree (grew to 100MB). They are now available from the fsldata source package. * Fix bug of using relative paths for menu icons. * Bumped Standard version to 3.9.4 -- no changes necessary. * Update fix-bashisms patch: oxford_asl requires bash. * Fix location of FSL docs. Move from transitional package to new one. * Add backport patches to disable CUDA support on the Ubuntu platform. It seems that an NVIDIA driver is required to install the CUDA toolkit on Ubuntu. -- Michael Hanke Wed, 30 Oct 2013 20:33:24 +0100 fsl (5.0.4-3) neurodebian; urgency=low * debian/patches - enanced up_longoptions= to print -o,--option=VALUE i.e. whenever both short and long options are available -- Yaroslav Halchenko Sat, 24 Aug 2013 09:07:32 -0400 fsl (5.0.4-2) neurodebian; urgency=low * debian/patches - added up_longoptions= - print --option=VALUE (instead of --option VALUE) in --help output to match expected formatting -- Yaroslav Halchenko Fri, 16 Aug 2013 12:44:51 -0400 fsl (5.0.4-1) neurodebian; urgency=low * New upstream release (skipped short-lived 5.0.3): - Documentation update - Various bugfixes - New 'baycest' tool for Bayesian analysis for chemical exchange saturation transfer z-spectra - New script 'first3Dview' for enabling 3D renderings for new vertex analysis results * Remove fabber patches -- merged upstream. * Use dpkg-buildflags to obtain default compiler flags. This also enables various hardening options. * Rename 'fsl' to 'fsl-core', 'fsl-5.0' to 'fsl-5.0-core', and 'fsl-doc-5.0' to 'fsl-5.0-doc'. See related entry in NEWS for the rational. Appropriate transitional dummy packages have been added. * Adjusted dependencies to recommend/suggest alternative packages for DICOM image conversion and distributed computing. -- Michael Hanke Wed, 08 May 2013 08:38:38 +0200 fsl (5.0.2.2-1) neurodebian; urgency=low * New upstream release. * Removed fix_imglob patch -- now included upstream. * Add patches to fix problems with the fabber component -- courtesy of Mark White - was buily without the Oxford ASL forward models - --model=xxx --help was broken due to a typo in an #ifdef * Improve package description to mention data dependencies for some components. -- Michael Hanke Mon, 18 Mar 2013 12:44:10 +0100 fsl (5.0.2-4) neurodebian; urgency=low * Removed left-over debug statement that broke fsl_sub again. -- Michael Hanke Sun, 20 Jan 2012 15:26:26 +0100 fsl (5.0.2-3) neurodebian; urgency=low * Modifications of fsl_sub behavior and configuration: - Add a configuration option to fsl.sh (FSLCLUSTER_DEFAULT_QUEUE) to specify a default queue for job submissions. This can be used to amend the default queue selection by resource demands. - Fix a bug in the Debian patch where job submission fails when fsl_sub is called without -q. - Fix a bug to actually honor the FSLCUSTER_MAILOPTS variable when set. - Restructure and minimize the upstream diff in fsl_sub to make it less likely to break again with future upstream changes. -- Michael Hanke Sun, 20 Jan 2012 15:26:26 +0100 fsl (5.0.2-2) neurodebian; urgency=low * Fix 'imglob' script (courtesy of Matthew Webster) that caused FEAT highlevel analyses to fail. * Enable OpenMP support for 'eddy' component. * Explicitly mention FSL data packages in package description and explain where they can be obtained. -- Michael Hanke Mon, 17 Dec 2012 17:02:36 +0100 fsl (5.0.2-1) neurodebian; urgency=low * New upstream bugfix release. * Updated patch for for new fsl_sub code. -- Michael Hanke Mon, 17 Dec 2012 17:02:36 +0100 fsl (5.0.1-1) neurodebian; urgency=low * New upstream bugfix release. It fixes some critical issues with FEAT (was crashing) and post-hoc output timecourses in MELODIC. * Stop regenerating tclIndex during postinst. This is no longer necessary since libfslio and its TCL scripts are built from the FSL source package -- which is since 4.1.1 or four years (Closes: #689166). -- Michael Hanke Thu, 06 Sep 2012 09:10:33 +0200 fsl (5.0.0-1) neurodebian; urgency=low * New upstream major release. Various new tools, bugfixes and speed improvements, as well as new wiki-based documentation. * Enable compilation and installation of previously missing and new components (Closes: #685486). * Added build-dependency on libglu1-mesa-dev and mesa-common-dev for fslsurface, as well as libexpatexpat-dev for other new code. -- Michael Hanke Thu, 06 Sep 2012 09:10:33 +0200 fsl (4.1.9-6) unstable; urgency=low * Declare a conflict to pre-4.1.9-5 fsl4.1-doc packages. Otherwise, upgrades might fail due to duplicate files . -- Michael Hanke Fri, 08 Jun 2012 07:54:20 +0200 fsl (4.1.9-5) unstable; urgency=low * Bugfix release. * Bumped Standard version to 3.9.3 -- no changes necessary. * Adjustments for Octave transition: changed dependencies in debian/control, make call to octave-depends conditional upon its presence to allow for easy backports (Closes: #674426) * Move fsl.css from -doc into the main package to prevent error message due to failed access to this file when the -doc package is not installed. (Closes: #675195) -- Michael Hanke Fri, 01 Jun 2012 10:35:16 +0200 fsl (4.1.9-4) unstable; urgency=low * Actually do the changes listed for 4.1.9-3. They needed to be implemented in the template files. -- Michael Hanke Sat, 17 Mar 2012 10:23:23 +0100 fsl (4.1.9-3) unstable; urgency=low * Relax dependency of fsl-doc on fslview-doc to recommends. FSLView is no longer available in unstable. -- Michael Hanke Sat, 14 Jan 2012 11:26:18 +0100 fsl (4.1.9-2) unstable; urgency=low * Added patch to prevent MATLAB scripts from failing because MATLAB redefines LD_LIBRARY_PATH. Courtesy of Duncan Mortimer. * Added initial support for using Condor for cluster support instead of SGE (FSLPARALLEL=condor). -- Michael Hanke Fri, 16 Dec 2011 19:24:00 +0100 fsl (4.1.9-1) unstable; urgency=low * New upstream relase. Merged patches (gdc_bugfix, missing_newline, gcc_compat). * Make fslview recommended (instead of depend), as it is currently not available for post-squeeze systems, due to VTK5-Qt3 dependency. * Remove brace expansion in debhelper install file (reported by lintian). -- Michael Hanke Mon, 24 Oct 2011 15:06:03 +0200 fsl (4.1.8-1) unstable; urgency=low * New upstream bugfix release. * Install README.Debian into the versioned FSL package. * Bumped Standard version to 3.9.2 -- no changes necessary. -- Michael Hanke Tue, 17 May 2011 16:45:10 -0400 fsl (4.1.7-1) unstable; urgency=low * New upstream bugfix release. Improved TFCE handling in fslmaths. Better error detection in randomise. MELODIC now has an option to use a user-defined seed. There are a number of minor fixes to FEAT. fslmerge now attempts to detect orientation problems during a temporal merge. -- Michael Hanke Wed, 19 Jan 2011 14:19:59 -0500 fsl (4.1.6-5) UNRELEASED; urgency=low * Added clarification to the manpage that a .bashrc might not exist and would have to be created. -- Michael Hanke Tue, 28 Sep 2010 17:00:39 -0400 fsl (4.1.6-4) unstable; urgency=low * Remove /usr/bin symlinks from 'fsl' package and remove now obsolete package conflicts (Closes: #592242 again). Instead, the 'fsl-4.1' package now installs properly prefixed ('fsl4.1-') symlinks into /usr/bin that do not conflict with existing files in any package and, moreover, allow tools from multiple FSL versions to coexist on the same system. Any internal FSL scripts are unaffected by this change. Adjust manpage and README.Debian to document this change, as well as added a NEWS entry. * Bumped Standard version to 3.9.1.0 -- no changes necessary. * Removed menu integration of 'Nudge' tool to prevent overcrowding of menu categories. It is of limited functionality and rarely used. -- Michael Hanke Fri, 03 Sep 2010 09:35:39 -0400 fsl (4.1.6-3) unstable; urgency=low * Add package conflict between 'fsl' and 'cyrus-clients-2.2', due to file conflict (Closes: #592242). Thanks to Ralf Treinen for detecting. -- Michael Hanke Sun, 08 Aug 2010 12:20:38 -0400 fsl (4.1.6-2) unstable; urgency=low * Install package content into version-specific locations to allow multiple major FSL release to coexist on the same system (Closes: #546241). The previous unversioned 'fsl' package remains and serves as a meta package that depends on the latest versioned FSL package and installs wrappers for all binaries into /usr/bin that can be used without manually sourcing a config file first. This change is based on work by Mark Hymers -- Thanks! * Add package conflicts to 'yagiuda', 'kolab-cyrus-clients', 'multimail', and 'im' due to namespace conflicts of symlinks in /usr/bin installed by the new FSL meta package. The versioned FSL packages are usable without the meta package (in case someone installs these packages on a neuroscience workstation) and the added convenience of a readily usable FSL (without manual environment tweaks) seems to outweigh the disadvantages. * Adjust build-dependency on libnifti1-dev to libnifti-dev. -- Michael Hanke Sun, 25 Jul 2010 11:12:30 -0400 fsl (4.1.6-1) unstable; urgency=low * New upstream release. Merged various patches with upstream. Closes: #581095. -- Michael Hanke Mon, 05 Jul 2010 10:44:16 -0400 fsl (4.1.5.2-3) unstable; urgency=low * Switch to source package format 3.0 (quilt). Convert all Git feature/bugfix branches into quilt patch series. * Remove obsolete dh_desktop call from debian/rules. * Add debhelper dependency variables to fsl-doc control stanza. * No longer compile with '-Wl,--as-needed' to prevent symbols from libcprob to be substituted by external replacements. * Updated and extended the package description. * Changed maintainer to NeuroDebian. Moved myself into uploaders and added Yaroslav Halchenko. * Fix syntax error in 'rotate_bvecs' script. -- Michael Hanke Sun, 02 May 2010 19:19:25 -0400 fsl (4.1.5.2-2) unstable; urgency=low * Fix broken fslmaths option (-tfce). Thanks to Clark Johnson and Matthew Webster. * Bumped Standard version to 3.8.4.0 -- no changes necessary. * Remove support for octave2.1 dependency and allow for octave3.2. Thanks to Thomas Weber for the report (Closes: #572763). -- Michael Hanke Sat, 06 Mar 2010 08:28:38 -0500 fsl (4.1.5.2-1) unstable; urgency=low * New upstream service release. Fixes issues with broken FNIRT scripts. * Include `fslecho` script in the binary package (Closes: #567133). Thanks to Petr Hlustík for reporting. -- Michael Hanke Thu, 28 Jan 2010 09:27:57 -0500 fsl (4.1.5-1) unstable; urgency=low * New upstream release. * An issue with Randomise "pausing" has been fixed. * There are some improvements to the bedpostx monitor script. * Large speedup for invwarp by automatically adjusting the useful FOV internally (no cropping of the original images needed). * Non-linear initialisation in bedpostx to allow better convergence of the MCMC chains * Some improvements and new options in Probtrackx: - allows to input nonlinear (FNIRT) warpfield instead of FLIRT matrices - bug fix in initial fibre selection - tracking from freesurfer cortical surface (into the brain) - tracking from random locations within a seed voxel * No longer compile with '-ansi -pedantic', since a significant part of the sources is actually not ANSI compliant (Closes: #546003). * Don't use roundl() to round doubles in src/basisfield/splinefield.cpp to prevent FTFBS on ARMEL (Closes: #513272). * Bumped Standard version to 3.8.3.0 -- no changes necessary. * New config variable FSLPARALLEL. If set, FSL will submit jobs to a running Sun Gridengine. By default, this setting is disabled in /etc/fsl/fsl.sh. (Closes: #546238). Added suggested package 'gridengine-client'. See README.Debian for more information. * Remove all menu items of GUI-apps that are directly accessible from the central FSL GUI. The menu got too crowded with all the different FSL items. -- Michael Hanke Fri, 22 Jan 2010 18:01:24 -0500 fsl (4.1.4-2) unstable; urgency=low * Include a number of upstream patches that went into 4.1.4 after the 4.1.4-1 package got uploaded. * Revert from -O3 to -O2 for compiler optimizations. -O3 seems to cause trouble for some pieces (miscmaths, avwutils) on some architectures. -- Michael Hanke Wed, 03 Jun 2009 20:52:45 +0200 fsl (4.1.4-1) unstable; urgency=low * New upstream release. * Fixed bashisms (Closes: #530084). -- Michael Hanke Sat, 23 May 2009 11:47:34 +0200 fsl (4.1.3-1) unstable; urgency=low * New Upstream Version. * Reverse the order of the octave*-headers build-dependency alternatives to account for the removal of octave2.1-headers from unstable (Closes: #523826). * Do not build-depend on FSLView anymore. That setup was way to complex and error-prone. * Bumped Standard version to 3.8.1 -- no changes necessary. -- Michael Hanke Mon, 27 Apr 2009 22:13:12 +0200 fsl (4.1.2-2) unstable; urgency=low * Use internals libs compiled by the fslview package, instead of building them again from fsl sources. * Added 'XS-DM-Upload-Allowed: yes' in debian/control. * Install fslio im* scripts. -- Michael Hanke Sat, 07 Feb 2009 10:33:03 +0100 fsl (4.1.2-1) unstable; urgency=low * New Upstream Version. * Added POSSUM installation directory to environment setup -- it refused to work otherwise. -- Michael Hanke Fri, 05 Dec 2008 10:23:08 +0100 fsl (4.1.1-2) unstable; urgency=low * Compile and use fslio library version that comes with the FSL sources. This fixes a bug when FSL 4.1 is used with ANALYZE images, which it cannot reliably do anymore (only NIfTI is supported). Also updated the configuration documentation (in /etc/fsl/fsl.sh) accordingly. -- Michael Hanke Fri, 24 Oct 2008 12:27:38 +0200 fsl (4.1.1-1) unstable; urgency=low * New Upstream Version fixing a number of bugs in FEAT, FDT and FNIRT. * Updated repackaging. Repackaging procedure was changed to keep fslio in the package. This version contains more up-to-date scripts than the ones in the nifticlibs package. * Install im* and tcl scripts from local fslio sources, instead of using the (discontinued) ones in the nifticlibs package. Therefore also removing dependency to 'nifti-bin'. * Do not install installer script -- useless on Debian (Closes: #489596). * Remove broken get-orig-source target from debian/rules. The repackaging procedure is implemented in the 'repackage-fsl' script shipped with the fslview package. -- Michael Hanke Thu, 16 Oct 2008 14:28:34 +0200 fsl (4.1.0-1) unstable; urgency=low * New Upstream Version. * Bumped Standard version to 3.8.0 -- no changes necessary. -- Michael Hanke Thu, 14 Aug 2008 13:14:53 +0200 fsl (4.0.4-2) unstable; urgency=low * Alternatively use octave3.0-headers (instead of just octave2.1-headers) package to determine octave paths. -- Michael Hanke Wed, 21 May 2008 09:20:29 +0200 fsl (4.0.4-1) unstable; urgency=low * New bugfix release. * Install missing IRTK configuration, which are not covered by the IRTK liccense. -- Michael Hanke Tue, 01 Apr 2008 11:04:19 +0200 fsl (4.0.3-2) unstable; urgency=low * Applied upstream patch to fix some problems with boolean commandline options. -- Michael Hanke Sat, 09 Feb 2008 13:15:21 +0100 fsl (4.0.3-1) unstable; urgency=low * New upstream release. Some bugfixes in bet2 and possum. * Removed all fftw-related stuff from the build-dependencies. Apparently it is not necessary anymore. Thanks to Paul Brossier for reporting (Closes: #460270). -- Michael Hanke Wed, 23 Jan 2008 17:09:38 +0100 fsl (4.0.2-3) unstable; urgency=low * Fixed some bugs for GCC 4.3 compatibility. * Updated build-dependencies for libnifti transition. -- Michael Hanke Sat, 05 Jan 2008 15:26:59 +0100 fsl (4.0.2-2) unstable; urgency=low * Refurbished debian/rules. Now honours 'noopt' and builds with debugging symbols by default. * Make Debian diff less intrusive by moving more logic into debian/rules. * Improve LD_LIBRARY_PATH handling by preventing trailing colons. * Let fsl-doc depend on fslview-doc to prevent dangling symlink. * Fixed location of lintian override. * Updated and completed list of licenses in debian/copyright. * Removed empty directories from the fsl-doc package. * Placed fsl-doc package in section non-free/doc. * Bumped Standard version to 3.7.3 -- no changes necessary. -- Michael Hanke Fri, 21 Dec 2007 10:56:09 +0100 fsl (4.0.2-1) unstable; urgency=low * New upstream bugfix release. - Susan: multiple performance improvements - SienaX: bugfix in sienax regarding the -lm option - Avwutils: minor fixes to fslmaths and fslsplit - Feat5: multiple minor fixes - Film: minor fix - Flame: bugfix in the multiple-group-variances estimation - Fdt: minor changes and fixes - Miscvis: fixed Renderstats gui * Use new-style Homepage field in debian/control. * Replace deprecated 'Source-Version' substvar with 'source:Version' in debian/control. * Removed executable permissions from all '.gif' files. -- Michael Hanke Fri, 16 Nov 2007 10:13:17 +0100 fsl (4.0.1-3) unstable; urgency=low * Added bc and dc to the dependencies. * Adjusted package build-deps to new libfftw3-dev package in Debian lenny. -- Michael Hanke Mon, 12 Nov 2007 22:38:01 +0100 fsl (4.0.1-2) unstable; urgency=low * Added a lintian override for the Runtcl syntax warning. This file is actually a mixed sh and tclsh script. -- Michael Hanke Wed, 5 Sep 2007 22:28:01 +0200 fsl (4.0.1-1) unstable; urgency=low * New upstream bugfix release. * BET can now store the brain surface in VTK format. -- Michael Hanke Sat, 01 Sep 2007 10:53:23 +0200 fsl (4.0.0-2) unstable; urgency=low * Bugfix: fsl_sub made use of non-POSIX operator while interpreter was set to /bin/sh. This caused the script to fail on Ubuntu systems that have dash as their default shell. -- Michael Hanke Thu, 30 Aug 2007 08:44:46 +0200 fsl (4.0.0-1) unstable; urgency=low * New upstream release. * Repackaged the FSL source tarball due to its size and the mixture of licenses and split it into three independent source packages: 'fsl' contains all non-free source code, 'fslview' contains FSLView and all other DFSG-compliant sources and 'fsldata' contains the arch-independent datasets (>900MB). * Conflict with old fsl-fslview package and depend on the successor 'fslview'. * Debian diff is now handled with a GIT repository. Build-dependency to dpatch is obsolete. * All internal libraries are compiled as shared libraries with -W,l--no-undefined to be able to detect unresolved symbols that have been an issue in the past. This also reduces the size of the binary package significantly. * FSL now uses libfslio, libniftiio and the im* tools from the corresponding Debian packages instead of a compiling a local copy. * Added 'dicomnifti' to the list of the suggested packages. * Removed obsolete runtime dependency to tix, imagemagick and gnuplot. -- Michael Hanke Fri, 17 Aug 2007 14:38:14 +0200 fsl (3.3.11-2) unstable; urgency=low * Removed manpage links of FSL internal cmdline tools to prevent namespace conflicts. * Disabled FSL developer variables in /etc/fsl/fsl.conf to prevent error messages when the file is sourced, but no compiler is installed. * Added wrapper script (similar to ssh-argv0) to be able to automatically source the FSL configuration on startup. This adds the opportunity to include menu and .desktop files. * Add proper menu and .desktop files for all FSL GUI applications. * Added build-depend on imagemagick to be able to generate a 32x32 icon for the FSL menu entries from included artwork. * Renamed fsl config file from fsl.conf to fsl.sh. This is done to reduce the differences between upstream releases and the Debian package. A preinst script was added to move old config files on package upgrades. The new behavior is noted in debian/NEWS. * Added XS-Vcs-Svn and XS-Vcs-Browser to debian/control. * Added comments about the CEPHES and Susan licensing to debian/copyright. * Added a link to the FSLView binary to /usr/share/fsl/bin, because Nudge was complaining about not beeing able to find it. Thanks to Yaroslav Halchenko for pointing at this issue. * Added manpage for fslview. -- Michael Hanke Tue, 01 May 2007 19:53:06 +0200 fsl (3.3.11-1) unstable; urgency=low * New upstream release. Fixes another minor randomize bug. -- Michael Hanke Sat, 31 Mar 2007 19:32:42 +0200 fsl (3.3.10-1) unstable; urgency=low * New upstream release. Fixes a bug in randomise. -- Michael Hanke Fri, 16 Mar 2007 18:38:08 +0100 fsl (3.3.9-1) unstable; urgency=low * New upstream release. -- Michael Hanke Fri, 16 Feb 2007 13:03:14 +0100 fsl (3.3.8-1) unstable; urgency=low * New upstream release. * Minor bugfixes fixes to avwmerge++ and avwmaths++. * Modified FSLView makefile to fix FTBFS due to missing fslio linrary. * Added debian/backports to the source package. It contains a patch that disables the fslview package when backporting to sarge using pbuilder-ssh. -- Michael Hanke Fri, 12 Jan 2007 10:42:06 +0100 fsl (3.3.7-3) unstable; urgency=low * Added missing changelog entries for 3.3.7-2. * Renamed the fsl-sbrain package to fsl-data. * Added missing licenses to debian/copyright. * Moved default FEAT configuration to /etc/fsl. * Temporarily added libvtk5-qt3 to the build-depends to work-around bug #389521. -- Michael Hanke Mon, 30 Oct 2006 11:02:14 +0100 fsl (3.3.7-2) unstable; urgency=low * Include FSLView docs in the fsl-doc package. * Added patch to fix FTBFS due to an issue with template instantiation. Thanks to Yaroslav Halchenko. * Minor enhancement for FSLView compilation (force Qt3 with Qt4 also present). * Fixed missing example_FA_target in $FSLDIR/etc/standard. -- Michael Hanke Sat, 9 Sep 2006 09:51:41 +0200 fsl (3.3.7-1) unstable; urgency=low * New upstream release. * Added FSLView package. -- Michael Hanke Sun, 30 Jul 2006 13:56:52 +0200 fsl (3.3.6-2) unstable; urgency=low * Bumped Standards-Version to 3.7.2; no changes necessary. -- Michael Hanke Mon, 3 Jul 2006 21:37:31 +0200 fsl (3.3.6-1) unstable; urgency=low * New upstream release. -- Michael Hanke Sun, 18 Jun 2006 08:18:51 +0200 fsl (3.3.5-2) unstable; urgency=low * Added patch for gcc4.1 compatibility (Thanks to Mark Jenkinson). -- Michael Hanke Sat, 10 Jun 2006 09:02:11 +0200 fsl (3.3.5-1) unstable; urgency=low * New upstream release -- Michael Hanke Tue, 2 May 2006 09:32:13 +0200 fsl (3.3.4-1) unstable; urgency=low * New upstream release (missed 3.3.3). FSLView source code is now included, but FSLView still cannot be build, because it build-depends on VTK 5.0. No Debian package of this version is currently available. * Added build conflict to libnifti0-dev. FSL sources contain an incompatible fork of this library. This situation should vanish with the next major release. -- Michael Hanke Wed, 26 Apr 2006 10:51:08 +0200 fsl (3.3.2-1) unstable; urgency=low * New upstream release. * Moved all binaries to /usr/lib/fsl after experiencing name clashes with other packages. -- Michael Hanke Tue, 11 Apr 2006 16:20:27 +0200 fsl (3.3.0-1) unstable; urgency=low * New upstream version. * Split standard space brain data into a separate package. * Made matlab m-files available for Octave. -- Michael Hanke Sat, 18 Mar 2006 23:56:31 +0100 fsl (3.2beta-4) unstable; urgency=low * Added the possibility to define additional compiler flags for arch-dependend optimization by defining them in the DEB_ARCH_OPT_FLAGS environment variable. -- Michael Hanke Thu, 23 Feb 2006 20:50:57 +0100 fsl (3.2beta-3) unstable; urgency=low * Split the dpatch patches into several smaller parts. * Added patches to replace most of the deprecated headers. * Improved patch to FAST for GCC4 compatiility. * Removed libcprob and newran from the tarball, since they are unnecessary for building FSL. * Added patch to libvis that makes it possible to use a dependency to the official Debian libgdchart-gd2 package instead of compiling the custom version from the FSL source tarball. * Switch package dependency for newmat to a package that provides a shared library (Thanks to Philippe Coval). -- Michael Hanke Sun, 19 Feb 2006 22:05:24 +0100 fsl (3.2beta-2) unstable; urgency=low * Added build-dependency to libnewmat10-dev and stopped compiling the included version. -- Michael Hanke Mon, 2 Jan 2006 14:46:14 +0100 fsl (3.2beta-1) unstable; urgency=low * Initial Release (Closes: #332666). * Upstream tarball was repackaged, because it contained lots of binaries of software available as proper Debian packages (see get-orig-source target in debian/rules). * Includes some fixes for compatibility with GCC4 (thanks to Andre Piel). -- Michael Hanke Wed, 28 Dec 2005 17:11:34 +0100