Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: ViennaRNA Source: https://www.tbi.univie.ac.at/RNA/ https://github.com/ViennaRNA/ViennaRNA/releases Files-Excluded: src/json src/libsvm-* src/cthreadpool doc/latex doc/html doc/RNAlib-*.pdf RNA-Tutorial/Data/programs/alifoldz_adopted.tar.gz RNA-Tutorial/Data/programs/qrna-2.0.3d.tar.gz Makefile.in */Makefile.in */*/Makefile.in RNA-Tutorial/RNA-tutorial-*.pdf */*eps-converted-to.pdf */aclocal.m4 src/*_cmdl.h src/*_cmdl.c compile config/ar-lib config/compile config/config.guess config/config.sub config/depcomp config.guess config.h.in config/install-sh config/ltmain.sh config/missing config.sub config/test-driver config/texinfo.tex configure depcomp ylwrap m4/libtool.m4 missing src/ViennaRNA/static/misc/dna_mathews1999.hex src/ViennaRNA/static/misc/dna_mathews2004.hex src/ViennaRNA/static/misc/rna_andronescu2007.hex src/ViennaRNA/static/misc/rna_langdon2018.hex src/ViennaRNA/static/misc/rna_misc_special_hairpins.hex src/ViennaRNA/static/misc/rna_turner1999.hex src/ViennaRNA/static/misc/rna_turner2004.hex src/ViennaRNA/static/postscript/aln_macro_base.hex src/ViennaRNA/static/postscript/dot_plot_macro_base.hex src/ViennaRNA/static/postscript/dot_plot_macro_linear_data.hex src/ViennaRNA/static/postscript/dot_plot_macro_sc_motifs.hex src/ViennaRNA/static/postscript/dot_plot_macro_sd.hex src/ViennaRNA/static/postscript/dot_plot_macro_turn.hex src/ViennaRNA/static/postscript/dot_plot_macro_ud.hex src/ViennaRNA/static/postscript/structure_plot_macro_base.hex src/ViennaRNA/static/postscript/structure_plot_macro_extras.hex man/RNA2Dfold.1 man/RNALalifold.1 man/RNALfold.1 man/RNAPKplex.1 man/RNAaliduplex.1 man/RNAalifold.1 man/RNAcofold.1 man/RNAdistance.1 man/RNAdos.1 man/RNAduplex.1 man/RNAeval.1 man/RNAfold.1 man/RNAheat.1 man/RNAinverse.1 man/RNAlib.info man/RNApaln.1 man/RNAparconv.1 man/RNApdist.1 man/RNAplex.1 man/RNAplfold.1 man/RNAplot.1 man/RNApvmin.1 man/RNAsnoop.1 man/RNAsubopt.1 man/RNAup.1 man/ct2db.1 src/Kinfold/cmdline.c src/Kinfold/cmdline.h src/Kinfold/config.h.in src/Kinwalker/config.h.in src/RNAforester/config.h.in src/RNAforester/src/anchors/shape.cpp src/RNAforester/src/anchors/shape.hpp src/RNAlocmin/RNAlocmin_cmdline.c src/RNAlocmin/RNAlocmin_cmdline.h src/RNAlocmin/config.h.in */autom4te.cache doc/refman-html install-sh interfaces/Perl/RNA.pm interfaces/Perl/RNA_wrap.cpp interfaces/Perl/version.i interfaces/Python3/RNA.py interfaces/Python3/RNA_wrap.cpp interfaces/Python3/version.i packaging/macosx/resources/welcome.txt src/Kinfold/INSTALL src/Kinfold/configure src/Kinwalker/configure src/RNAforester/INSTALL src/RNAforester/configure src/RNAforester/g2-0.72/configure src/RNAlocmin/configure src/ViennaRNA/static/energy_parameter_sets.h src/ViennaRNA/static/templates_postscript.h src/*/ylwrap src/*/install-sh src/*/depcomp src/*/missing src/*/compile src/*/config.sub src/*/config.guess src/RNAforester/g2-0.72/include RNA-Tutorial/Data/programs m4/lt~obsolete.m4 m4/ltversion.m4 m4/ltoptions.m4 m4/ltsugar.m4 Files: * Copyright: 2009 Ivo Hofacker License: non-free Disclaimer and Copyright . The programs, library and source code of the Vienna RNA Package are free software. They are distributed in the hope that they will be useful but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. . Permission is granted for research, educational, and commercial use and modification so long as 1) the package and any derived works are not redistributed for any fee, other than media costs, 2) proper credit is given to the authors and the Institute for Theoretical Chemistry of the University of Vienna. . If you want to include this software in a commercial product, please contact the authors. . Note that the file ./src/ViennaRNA/plotting/naview.c has its own copyright attached. Files: src/ViennaRNA/naview.c Copyright: 1988 Robert E. Bruccoleri License: non-commercial Copying of this software, in whole or in part, is permitted provided that the copies are not made for commercial purposes, appropriate credit for the use of the software is given, this copyright notice appears, and notice is given that the copying is by permission of Robert E. Bruccoleri. Any other copying requires specific permission. Files: src/RNAforester/* Copyright: 2012-2017 Matthias Hoechsmann (mhoechsm@techfak.uni-bielefeld.de) Stefanie Schirmer (sschirme@techfak.uni-bielefeld.de) License: non-free_no-fee The programs and source code of RNAforester are free software. They are distributed in the hope that they will be useful but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. . Permission is granted for research, educational, and commercial use and modification so long as 1) the package and any derived works are not redistributed for any fee, other than media costs, 2) proper credit is given to the authors. Files: debian/* Copyright: 2011 Alex Mestiashvili 2011 Andreas Tille 2014 Olivier Sallou 2019-2020 Steffen Moeller License: GPL-2+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this package; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA . On Debian systems, the full text of the GNU General Public License version 2 can be found in the file `/usr/share/common-licenses/GPL-2'.