Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: ViennaRNA
Source: https://www.tbi.univie.ac.at/RNA/
https://github.com/ViennaRNA/ViennaRNA/releases
Files-Excluded:
src/dlib-*.tar.*
src/libsvm-*
src/cthreadpool
*/*/Makefile.in
src/Kinfold/INSTALL
src/RNAforester/INSTALL
src/*/config.sub
src/*/config.guess
RNA-Tutorial/Data/programs
Files: *
Copyright: 2009 Ivo Hofacker <ivo@tbi.univie.ac.at>
License: non-free
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Copyright: 1994-2016 Free Software
License: FSFAP
Files: RNA-Tutorial/pgfsys-tex4ht.def
Copyright: 2006, Till Tantau
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Files: doc/breathe/*
Copyright: 2009 Michael Jones
License: BSD-3-clause
Files: doc/breathe/breathe/apidoc.py
Copyright: 2008 Société des arts technologiques (SAT)
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Files: doc/breathe/examples/tinyxml/tinyxml.h
Copyright: 2000-2006 Lee Thomason (www.grinninglizard.com)
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Files: doc/doxy2swig/*
Copyright: Prabhu Ramachandran
2015 Michael Thon
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Files: interfaces/Python/file_py3.i
Copyright: 2011, Karel Slany (karel.slany AT nic.cz)
License: BSD-3-clause
Files: m4/ax_append_flag.m4
m4/ax_check_compile_flag.m4
m4/ax_check_link_flag.m4
Copyright: 2011, Maarten Bosmans <mkbosmans@gmail.com>
2008, Guido U. Draheim <guidod@gmx.de>
License: FSFAP
Files: m4/ax_compiler_vendor.m4
Copyright: 2018-2019 John Zaitseff <J.Zaitseff@zap.org.au>
2008 Steven G. Johnson <stevenj@alum.mit.edu>
2008 Matteo Frigo
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Files: m4/ax_cxx_compile_stdcxx.m4
Copyright: 2021 Jörn Heusipp <osmanx@problemloesungsmaschine.de>
2020 Jason Merrill <jason@redhat.com>
2019 Enji Cooper <yaneurabeya@gmail.com>
2016-2018 Krzesimir Nowak <qdlacz@gmail.com>
2015 Paul Norman <penorman@mac.com>
2015 Moritz Klammler <moritz@klammler.eu>
2014-2015 Google Inc.; contributedAlexey Sokolov <sokolov@google.com>
2013 Roy Stogner <roystgnr@ices.utexas.edu>
2012 Zack Weinberg <zackw@panix.com>
2008 Benjamin Kosnik <bkoz@redhat.com>
License: FSFAP
Files: m4/ax_openmp.m4
Copyright: 2016, Nick R. Papior <nickpapior@gmail.com>
2015 John W. Peterson <jwpeterson@gmail.com>
2008 Steven G. Johnson <stevenj@alum.mit.edu>
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2011 Stanislav Sedov <stas@FreeBSD.org>
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Copyright: 2009 Mats Kindahl of Sun Microsystems <mats@sun.com>
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Copyright: 2021 Vincent Danjean <Vincent.Danjean@ens-lyon.org>
2018 Reini Urban <rurban@cpan.org>
2011 Murray Cumming <murrayc@openismus.com>
2008 Sebastian Huber <sebastian-huber@web.de>
2008 Rafael Laboissiere <rafael@laboissiere.net>
2008 Andrew Collier
2008 Alan W. Irwin
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Files: src/json/*
Copyright: 2011 Joseph A. Adams (joeyadams3.14159@gmail.com)
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Copyright: 1987-2000 Free Software Foundation, Inc. <https://fsf.org/>
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Copyright: 2012-2017 Matthias Hoechsmann (mhoechsm@techfak.uni-bielefeld.de)
Stefanie Schirmer (sschirme@techfak.uni-bielefeld.de)
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Copyright: 1999 Lj. Milanovic, H. Wagner
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2014 2015 Google Inc.; contributedAlexey Sokolov <sokolov@google.com>
2013 Roy Stogner <roystgnr@ices.utexas.edu>
2012 Zack Weinberg <zackw@panix.com>
2008 Benjamin Kosnik <bkoz@redhat.com>
License: FSFAP
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Copyright: 2011 Murray Cumming <murrayc@openismus.com>
2008 Sebastian Huber <sebastian-huber@web.de>
2008 Rafael Laboissiere <rafael@laboissiere.net>
2008 Andrew Collier
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Copyright: 2014 Mike Frysinger <vapier@gentoo.org>
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2008 Andrew Collier
2008 Alan W. Irwin
License: GPL-2+ with Autoconf-2.0~Archive exception
Files: src/RNAxplorer/src/barrier_lower_bound.c
src/RNAxplorer/src/distorted_sampling.c
src/ViennaRNA/combinatorics.c
src/ViennaRNA/commands.c
src/ViennaRNA/sequence.c
src/ViennaRNA/constraints/ligand.c
src/ViennaRNA/datastructures/char_stream.c
src/ViennaRNA/io/file_formats.c
src/ViennaRNA/io/file_formats_msa.c
src/ViennaRNA/search/BoyerMoore.c
src/ViennaRNA/utils/cpu.c
src/ViennaRNA/utils/units.c
src/bin/RNAmultifold.c
Copyright: 2014-2018 Ronny Lorenz
License: non-free
Files: src/RNAxplorer/src/distorted_samplingMD.c
src/RNAxplorer/src/gradient_walker.c
src/RNAxplorer/src/gradient_walker.h
Copyright: Gregor Entzian
License: non-free
Files: src/ViennaRNA/datastructures/lists.c
Copyright: 1991 Kendall Bennett.
License: non-free
Files: src/ViennaRNA/naview.c
Copyright: 1988 Robert E. Bruccoleri
License: non-commercial
Copying of this software, in whole or in part, is permitted
provided that the copies are not made for commercial purposes,
appropriate credit for the use of the software is given, this
copyright notice appears, and notice is given that the copying
is by permission of Robert E. Bruccoleri. Any other copying
requires specific permission.
Files: src/ViennaRNA/params/default.c
Copyright: 2008-2010, Christian Hoener zu Siederdissen, TBI Vienna
License: non-free
Files: src/cephes/*
Copyright: 1984-2002 Stephen L. Moshier
License: Cephes
Files: debian/*
Copyright: 2011 Alex Mestiashvili <alex@biotec.tu-dresden.de>
2011 Andreas Tille <tille@debian.org>
2014 Olivier Sallou <osallou@debian.org>
2019-2020 Steffen Moeller <moeller@debian.org>
License: GPL-2+
License: non-free
Disclaimer and Copyright
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The programs, library and source code of the Vienna RNA Package are free
software. They are distributed in the hope that they will be useful
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
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Permission is granted for research, educational, and commercial use
and modification so long as 1) the package and any derived works are not
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If you want to include this software in a commercial product, please contact
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Note that the file ./src/ViennaRNA/plotting/naview.c has its own
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License: non-free_no-fee
The programs and source code of RNAforester are free
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
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Permission is granted for research, educational, and commercial use
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License: GPL-2
On Debian systems, the full text of the GNU General Public
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License: GPL-2+
This program is free software; you can redistribute it
and/or modify it under the terms of the GNU General Public
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version 2 of the License, or (at your option) any later
version.
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This program is distributed in the hope that it will be
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