abyss (2.1.5-7) unstable; urgency=medium
* Add myself as an uploader.
* The package openmpi-bin is now a required dependency for the abyss
binary package. Many thanks to ci.debian.org for bringing this to light.
* Fix "implicit declaration of function"s in dialign/museq.c
* Fix some spelling typos
* Register the flowchart PDFs with doc-base
-- Michael R. Crusoe <michael.crusoe@gmail.com> Sun, 17 Feb 2019 05:19:54 -0800
abyss (2.1.5-6) unstable; urgency=high
* Team upload.
* Add dependency on openmpi-common for error messages
-- Michael R. Crusoe <michael.crusoe@gmail.com> Sat, 16 Feb 2019 01:52:28 -0800
abyss (2.1.5-5) unstable; urgency=medium
* Team upload.
* Fix MPI build. Closes: #922351
-- Michael R. Crusoe <michael.crusoe@gmail.com> Fri, 15 Feb 2019 06:23:47 -0800
abyss (2.1.5-4) unstable; urgency=medium
* Fix build on hurd due to missing header file (thanks for the patch
to Samuel Thibault <sthibault@debian.org>)
Closes: #920240
* debhelper 12
-- Andreas Tille <tille@debian.org> Wed, 23 Jan 2019 15:49:21 +0100
abyss (2.1.5-3) unstable; urgency=medium
* Re-add armel architecture
Closes: #918735
-- Andreas Tille <tille@debian.org> Wed, 09 Jan 2019 21:23:43 +0100
abyss (2.1.5-2) unstable; urgency=medium
* Restrict set of architectures to those where package is known to
build (or never was successfully build)
Closes: #918575
* Standards-Version: 4.3.0
-- Andreas Tille <tille@debian.org> Tue, 08 Jan 2019 15:53:09 +0100
abyss (2.1.5-1) unstable; urgency=medium
* Fix strict alignment violation on sparc64 (Thanks to David Matthew Mattli
and James Clarke)
Closes: #889147
* New upstream version
* Remove trailing whitespace in debian/changelog
* Remove trailing whitespace in debian/copyright
-- Andreas Tille <tille@debian.org> Sat, 08 Dec 2018 07:24:02 +0100
abyss (2.1.1-1) unstable; urgency=medium
* New upstream version
* Standards-Version: 4.2.1
* Fix Perl interpreter path
-- Andreas Tille <tille@debian.org> Wed, 26 Sep 2018 13:30:44 +0200
abyss (2.1.0-1) unstable; urgency=medium
* New upstream version
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
-- Andreas Tille <tille@debian.org> Fri, 20 Apr 2018 10:04:32 +0200
abyss (2.0.3-1) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata: RRID -> SciCrunch
[ Andreas Tille ]
* New upstream version
* Standards-Version: 4.1.3
* debhelper 11
-- Andreas Tille <tille@debian.org> Tue, 20 Mar 2018 14:33:26 +0100
abyss (2.0.2-3) unstable; urgency=medium
* Team upload.
[ Nadiya Sitdykova ]
* Add simple autopkgtest test-suite.
[ Steffen Moeller ]
* [debian/upstream/metadata] Added references to bio.tools, OMICtools
and RRID
[ Sascha Steinbiss ]
* Add missing dependency on bsdmainutils.
* Use HTTPS URL for Format entry in d/copyright.
* Bump Standards-Version.
-- Nadiya Sitdykova <rovenskasa@gmail.com> Fri, 30 Jun 2017 16:56:26 -0400
abyss (2.0.2-2) unstable; urgency=medium
* FTBFS on mips and other big-endian architectures (Thanks for the patch
to Daniel Knezevic <Daniel.Knezevic@imgtec.com>)
Closes: #847574
* debhelper 10
* d/watch: version=4
-- Andreas Tille <tille@debian.org> Sun, 11 Dec 2016 14:24:34 +0100
abyss (2.0.2-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Tue, 01 Nov 2016 12:06:10 +0100
abyss (2.0.1-1) unstable; urgency=medium
[ Andreas Tille ]
* New upstream version now licensed under GPL-3
* Moved package to main
* cme fix dpkg-control
* use markdown to create doc
* hardening=+all
[ Gert Wollny ]
* Force gtest to use c++11 based std::tuple
-- Andreas Tille <tille@debian.org> Mon, 10 Oct 2016 19:57:56 +0200
abyss (1.9.0-1) unstable; urgency=medium
* New upstream version
Adapted patches
* Took over COPYRIGHT from upstream as debian/copyright
* Dropped Shaun Jackman from Uploaders since he confirmed that he will not
be able to maintain the package
* Build-Depends: libsqlite3-dev
* Script uses bash syntax so request bash interpreter
-- Andreas Tille <tille@debian.org> Thu, 16 Jul 2015 11:28:54 +0200
abyss (1.5.2-2) unstable; urgency=medium
* abyss-fixmate and DistanceEst are expected to be in /usr/bin by sga
* configure was missing ghc -> mention this fact in README.source for
further inspection
* Fix FTBFS on 32-bit architectures (thanks for the patch to Graham
Inggs <graham@nerve.org.za>)
Closes: #780409
* cme fix dpkg-control
-- Andreas Tille <tille@debian.org> Mon, 18 May 2015 14:24:21 +0200
abyss (1.5.2-1) unstable; urgency=medium
* New upstream version (remove applied patches)
* d/watch: Moved to github
* d/control+d/rules: use dh-autoreconf
* d/control: Build-Depends: libtext-multimarkdown-perl
* cme fix dpkg-control
* d/control: Build-Depends: libgtest-dev to enable unit tests at build time
* d/control: drop copy of citation info from long description
* patch to make gtest work (thanks to Anthony Raymond <traymond@bcgsc.ca>)
* Drop privacy breach in doc
-- Andreas Tille <tille@debian.org> Mon, 15 Sep 2014 14:53:24 +0200
abyss (1.3.6-1) unstable; urgency=low
* Team upload (Closes: #722072).
e05ee57 Imported Upstream version 1.3.5
b391f1f Imported Upstream version 1.3.6 (Closes: #702440)
7edc28b Signal the use of git-buildpackage with this configuration file.
a3beaac Normalised source package control file with config-model-edit.
dd86394 Conforms with Policy version 3.9.4.
71d42ad Normalised VCS URLs.
-- Charles Plessy <plessy@debian.org> Sun, 08 Sep 2013 11:36:44 +0900
abyss (1.3.4-4) unstable; urgency=low
* Team upload.
* Fix FTBFS with gcc-4.8, -Werror=unused-local-typedefs.
* Enable parallel build.
-- Dmitrijs Ledkovs <dmitrij.ledkov@ubuntu.com> Mon, 01 Jul 2013 21:06:59 +0100
abyss (1.3.4-3) unstable; urgency=low
* Disable POPCNT
Closes: #697344
* Add debian/README.debian to inform users about this change asking
for some comparison of the speed to consider other means for better
performance
-- Andreas Tille <tille@debian.org> Fri, 04 Jan 2013 11:07:10 +0100
abyss (1.3.4-2) unstable; urgency=low
* Team upload
* debian/upstream: BibTeX compliant authors
-- Andreas Tille <tille@debian.org> Fri, 01 Jun 2012 08:38:29 +0200
abyss (1.3.4-1) unstable; urgency=low
* New upstream release.
* debian/copyright: Add CityHash, which has an Expat license.
* debian/control: Bump Standards-Version to 3.9.3.1.
-- Shaun Jackman <sjackman@debian.org> Thu, 31 May 2012 11:39:13 -0700
abyss (1.3.3-2) unstable; urgency=low
* debian/control:
- Team maintenance in Debian Med team
- Moved packaging to Git
* debian/upstream: Add citation information
* debhelper 9 (control+compat)
* debian/copyright: Add github as another location for obtaining
the source
-- Andreas Tille <tille@debian.org> Sun, 01 Apr 2012 08:44:48 +0200
abyss (1.3.3-1) unstable; urgency=low
* New upstream release.
* Some components are dual-licensed BCCA-Academic or GPL-3+.
* Bump Standards-Version to 3.9.3.
-- Shaun Jackman <sjackman@debian.org> Tue, 13 Mar 2012 15:43:49 -0700
abyss (1.3.2-1) unstable; urgency=low
* New upstream release.
-- Shaun Jackman <sjackman@debian.org> Tue, 13 Dec 2011 17:04:24 -0800
abyss (1.3.1-1) unstable; urgency=low
* New upstream release.
-- Shaun Jackman <sjackman@debian.org> Mon, 24 Oct 2011 11:32:59 -0700
abyss (1.3.0-1) unstable; urgency=low
* New upstream release.
* Add libboost-graph-dev to Build-Depends.
-- Shaun Jackman <sjackman@debian.org> Sun, 11 Sep 2011 10:00:13 -0700
abyss (1.2.7-3) unstable; urgency=low
* Align/Aligner.cpp, Scaffold/scaffold.cc: Fix FTBFS bug for GCC 4.6.
-- Shaun Jackman <sjackman@debian.org> Mon, 15 Aug 2011 11:07:19 -0700
abyss (1.2.7-2) unstable; urgency=low
* debian/control: Add `XS-Autobuild: yes'. Suggest openmpi-bin.
* debian/copyright: Change `Format-Specification' to `Format'.
-- Shaun Jackman <sjackman@debian.org> Thu, 21 Jul 2011 09:55:52 -0700
abyss (1.2.7-1) unstable; urgency=low
* Initial release. Closes: #631534.
-- Shaun Jackman <sjackman@debian.org> Fri, 24 Jun 2011 12:16:36 -0700