cd-hit (4.8.1-3) unstable; urgency=medium
* Fix Homepage
Closes: #975385
* Standards-Version: 4.5.1 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Update watch file format version to 4.
* Set upstream metadata fields: Bug-Database, Bug-Submit.
* Remove obsolete fields Contact, Name from debian/upstream/metadata (already
present in machine-readable debian/copyright).
-- Andreas Tille <tille@debian.org> Sat, 21 Nov 2020 20:27:41 +0100
cd-hit (4.8.1-2) unstable; urgency=medium
[ Helmut Grohne ]
* Fix FTCBFS: Makefile expects a C++ compiler in $CC. (Closes: #932652)
-- Andreas Tille <tille@debian.org> Mon, 22 Jul 2019 00:42:22 +0200
cd-hit (4.8.1-1) unstable; urgency=medium
[ Jelmer Vernooij ]
* Use secure copyright file specification URI.
* Trim trailing whitespace.
[ Andreas Tille ]
* New upstream version
* debhelper 12
* Standards-Version: 4.4.0
* Remove trailing whitespace in debian/rules
* Do not parse d/changelog
* Build-Depends: zlib1g-dev
-- Andreas Tille <tille@debian.org> Fri, 19 Jul 2019 19:34:25 +0200
cd-hit (4.6.8-2) unstable; urgency=medium
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
-- Andreas Tille <tille@debian.org> Wed, 19 Sep 2018 14:47:50 +0200
cd-hit (4.6.8-1) unstable; urgency=medium
* Team upload.
* New upstream release.
* Make build reproducible, thanks to Chris Lamb for the patch.
Closes: #866330
-- Sascha Steinbiss <satta@debian.org> Sat, 01 Jul 2017 10:43:07 +0200
cd-hit (4.6.7-1) unstable; urgency=medium
* New upstream version
- cd-hit-est and cd-hit-est-2d now can cluster paired end (PE) reads.
- user can select sub-sequence from the beginning of the sequences for clustering.
- psi-cd-hit.pl can work with blast+.
- output cluster file can be sorted by cluster size, in addition to cluster length, which is still the default
- output fasta file can be sorted by cluster size.
* upstream/metadata: Added RRID
* upstream/edam: Crude first entry
* Team upload.
-- Steffen Moeller <moeller@debian.org> Wed, 14 Jun 2017 15:55:31 +0200
cd-hit (4.6.6-2) unstable; urgency=medium
[ Canberk Koç ]
* Team upload.
* Autopkgtest added
[ Andreas Tille ]
* Install originally named tools (including '-' to /usr/bin)
-- Canberk Koç <canberkkoc@gmail.com> Sun, 14 Aug 2016 14:49:02 +0300
cd-hit (4.6.6-1) unstable; urgency=medium
* New upstream version
* Moved from SVN to Git
-- Andreas Tille <tille@debian.org> Wed, 03 Aug 2016 22:20:07 +0200
cd-hit (4.6.5-2) unstable; urgency=medium
* Remove links to scripts that were removed in this version
Closes: #825582
* cme fix dpkg-control
* Better hardening
-- Andreas Tille <tille@debian.org> Sat, 28 May 2016 09:24:04 +0200
cd-hit (4.6.5-1) unstable; urgency=medium
* New upstream version
* cme fix dpkg-control
-- Andreas Tille <tille@debian.org> Wed, 09 Mar 2016 21:47:21 +0100
cd-hit (4.6.4-1) unstable; urgency=medium
* New upstream version
* Adapted d/watch to move from google code to Github
* Remove redundant remark from author about LaTeX source of doc
* cme fix dpkg-control
* Update debian/copyright
* Some tools do not generate a help2man output any more
-- Andreas Tille <tille@debian.org> Fri, 22 Jan 2016 15:31:20 +0100
cd-hit (4.6.1-2012-08-27-2) unstable; urgency=low
* Take over changes from BioLinux
-- Andreas Tille <tille@debian.org> Thu, 15 Aug 2013 21:36:49 +0200
cd-hit (4.6.1-2012-08-27-1biolinux1) precise; urgency=low
* Rebuild for Precice
* Add new cdhit-454 to /usr/bin, including help2man manpage
* Remove dependency on openmpi, as cd-hit doesn't use it at all.
(It uses the -fopenmp compiler flag; maybe there was some confusion?)
-- Tim Booth <tbooth@ceh.ac.uk> Thu, 15 Aug 2013 17:00:41 +0100
cd-hit (4.6.1-2012-08-27-1) unstable; urgency=low
* New upstream version (adapted patches)
* debian/control:
- cme fix dpkg-control
- use anonscm in Vcs fields
-- Andreas Tille <tille@debian.org> Sun, 11 Aug 2013 10:51:30 +0200
cd-hit (4.6-2012-04-25-1) unstable; urgency=low
* New upstream version incorporating the previous patches as
well as the LaTeX source of the documentation
* debian/patches/use-dpkg-buildflags.patch: Make sure hardening
flags will really propagate
* debian/{control,rules}: Use mpi version of cd-hit
* README.Debian: Tell users that we are using mpi and they should
ask for an alternative if needed
* debian/*.1, debian/manpages: Deleted in favour of autogenerated
manpages using help2man; Remark: the manually edited pages were
slightly better regarding "SEE ALSO" and "AUTHORS" sections but
it is better to auto-generate the pages to stay with changes of
future versions
* debian/rules: Use help2man 2 create manpages whereever possible
* debian/patches/enable_help2man.patch: Fix some minor issues to
get less error output in man pages
-- Andreas Tille <tille@debian.org> Thu, 26 Apr 2012 07:54:23 +0200
cd-hit (4.5.8-2012-03-24-1) unstable; urgency=low
[ Charles Plessy ]
* renamed debian/upstream-metadata.yaml to debian/upstream
[ Andreas Tille ]
* New upstream version
* debian/watch: Fixed to reflect the change on code.google.com
* debian/control: Standards-Version: 3.9.3 (no changes needed)
* debian/copyright: Fixed DEP5 and verified using
cme fix dpkg-copyright
* debian/patches/gcc-4.7.patch: Enable building with g++-4.7
Closes: #667134
* debian/upstream:
- use BibTeX format to specify author
- Move DOI+PMID to References
- Differentiate between URl and eprint
* debhelper 9 (control+compat)
-- Andreas Tille <tille@debian.org> Sun, 22 Apr 2012 18:06:41 +0200
cd-hit (4.5.7-1) unstable; urgency=low
* Initial release (Closes: #652074)
* This package is recommended by the package qiime and thus it also
Closes: #651983
-- Andreas Tille <tille@debian.org> Wed, 14 Dec 2011 14:39:32 +0100