emboss (6.6.0+dfsg-12) unstable; urgency=medium
* Enable building on hppa by disabling java support which is missing there
Closes: #1021440
* Standards-Version: 4.6.1 (routine-update)
* Use secure URI in Homepage field.
* Lintian-overrides (See lintian bug #1017966)
-- Andreas Tille <tille@debian.org> Mon, 10 Oct 2022 16:30:48 +0200
emboss (6.6.0+dfsg-11) unstable; urgency=medium
* Team upload.
* Set field Upstream-Name in debian/copyright.
* Remove obsolete field Name from debian/upstream/metadata (already present
in machine-readable debian/copyright).
-- Andrius Merkys <merkys@debian.org> Fri, 18 Feb 2022 13:43:27 -0000
emboss (6.6.0+dfsg-10) unstable; urgency=medium
* Remove com.sun.net.ssl calls, removed from jdk17 (Closes: #982036)
-- Olivier Sallou <osallou@debian.org> Thu, 23 Dec 2021 08:18:17 +0000
emboss (6.6.0+dfsg-9) unstable; urgency=medium
7a121b7 Remove quotes in mailcap entries.
Thanks to Marriott NZ <marriott99@gmx.com> (Closes: #985596)
-- Charles Plessy <plessy@debian.org> Sun, 28 Mar 2021 13:46:29 +0900
emboss (6.6.0+dfsg-8) unstable; urgency=medium
[ Jelmer Vernooij ]
* Trim trailing whitespace.
* Use secure copyright file specification URI.
[ Andreas Tille ]
* Nelson A. de Oliveira retired from Debian (thanks for your previous
work on this package Nelson)
Closes: #962116
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Remove trailing whitespace in debian/copyright (routine-update)
* Do not parse d/changelog (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Trim trailing whitespace.
* Remove obsolete field Contact from debian/upstream/metadata (already present
in machine-readable debian/copyright).
* Fix day-of-week for changelog entry 2.6.0-1.
-- Andreas Tille <tille@debian.org> Wed, 03 Jun 2020 20:51:54 +0200
emboss (6.6.0+dfsg-7) unstable; urgency=medium
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.5
* Drop unused lintian-overrides
* Respect DEB_BUILD_OPTIONS in override_dh_auto_test
* Lintian override for script-with-language-extension
* More verbose package descriptions for all packages
-- Andreas Tille <tille@debian.org> Fri, 03 Aug 2018 05:59:14 +0200
emboss (6.6.0+dfsg-6) unstable; urgency=medium
* debhelper 10
* d/watch: version=4
* Build-Depends: default-libmysqlclient-dev
Closes: #845838
-- Andreas Tille <tille@debian.org> Sat, 03 Dec 2016 08:40:10 +0100
emboss (6.6.0+dfsg-5) unstable; urgency=medium
* Make sure manpage links will not end up in archindep packages
Closes: #834013
-- Andreas Tille <tille@debian.org> Fri, 12 Aug 2016 16:48:46 +0200
emboss (6.6.0+dfsg-4) unstable; urgency=medium
[ Canberk Koç ]
* Team upload.
* Autopkgtest added
[ Andreas Tille ]
* hardening+=all
* Fix some minor spelling issues inside packaging
* Secure Vcs-Git
* Bumped Standards-Version
-- Canberk Koç <canberkkoc@gmail.com> Tue, 09 Aug 2016 07:27:29 +0300
emboss (6.6.0+dfsg-3) unstable; urgency=medium
* Make sure we will not delete documentation files from new upstream
version
* Enable build on hurd
Closes: #762673
* cme fix dpkg-control
* incorporate changes from biolinux (see below)
* Make sure data are really in th directory where they will be copied from
Closes: #806022
* Ignore false lintian positives about package-contains-timestamped-gzip
* Cleanup debian/copyright from not existing files and not DEP5 conform
issues
* d/watch: add version mangling
-- Andreas Tille <tille@debian.org> Tue, 01 Dec 2015 16:03:42 +0100
emboss (6.6.0+dfsg-2biolinux1) trusty; urgency=medium
* Current package builds jemboss from source but then installs
the pre-built jemboss.jar from the tarball - not good!!
Add ant dep and ensure that jemboss.jar really builds
* Include image for icon and edit .desktop file
* Add /usr/bin/jemboss
* Clean ./jemboss/runJemboss.sh which is created on build
* Clean various other files that blocked debuild -S (but note
we are still using some convenience copies of JARs)
* Remove makeJar.csh, and thus remove jemboss dep on csh
* Remove activation.jar which does not seem to be used at all
-- Tim Booth <tbooth@ceh.ac.uk> Wed, 08 Apr 2015 19:06:09 +0100
emboss (6.6.0+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* debian/copyright: Add Upstream-Contact to report bugs
[ Gert Wollny ]
* Add patch to pad Hershey_to_Unicode_table consistently (Closes: #748395)
[ Andreas Tille ]
* cme fix dpkg-control:
- drop very old library versions from conflicts / replaces list
* remove explicite quilt dependency which is not needed
* debian/copyright: Exclude invariant GFDL 1.1 files which are related to
quite outdated EMBOSS 2.5.0
* debian/emboss-doc.doc-base.emboss-admin: removed
* debian/patches/remove_non-free_doc.patch: Cleanup Makefile.am from non-free
docs
-- Andreas Tille <tille@debian.org> Mon, 19 May 2014 20:52:12 +0200
emboss (6.6.0-1) unstable; urgency=low
[ Charles Plessy ]
ec024a3 Imported Upstream version 6.5.7
78ef855 Removed upstream patch (for version 6.4.0).
2f66060 Clarified the license of the packaging.
[ Andreas Tille ]
* Imported Upstream version 6.6.0 (+adapt quilt patches)
Closes: #558852 (at least the regexp
dpkg-shlibdeps: warning: symbol.*found in none of the libraries
does not appear in the build log any more - feel free to reopen
with more info)
* Clarified copyright and licenses for:
- emboss/data/OBO/chebi.obo [b60238c]
- emboss/data/OBO/gene_ontology*.obo [dc91819]
- emboss/data/OBO/software.obo [3c8b4bf]
- emboss/data/OBO/*.obo [8c34d40]
- emboss/data/OBO/pathway.obo [1b3bbcf][1ff8ab9]
- emboss/data/OBO/eco.obo [95aa795]
- emboss/data/OBO/ro.obo [2865596]
* debian/control:
- Standards-Version: 3.9.4 (no changes needed)
- Provide real package evince in addition to virtual package pdf-viewer
* debian/rules:
- Remove some remainings from CVS from emboss-test package
* debian/{jemboss.desktop,jemboss.menu}:
- runJemboss.sh is now POSIX shell instead of csh
* debian/source/format: 3.0 (quilt)
* debian/patches/bashism.patch: Avoid bashism
Closes: #690651
-- Andreas Tille <tille@debian.org> Mon, 09 Sep 2013 14:48:22 +0200
emboss (6.4.0-4) unstable; urgency=low
* use autoreconf to enable latest changes
-- Andreas Tille <tille@debian.org> Fri, 10 Aug 2012 22:46:33 +0200
emboss (6.4.0-3) unstable; urgency=low
* Import patches prepared by Felix Geyer <fgeyer@debian.org> to cope
with the --as-needed issue when linking against database clients
(thanks to Felix)
Closes: #650237
* Fix typo to build emboss including PostgreSQL support (Thanks to
Felix Geyer <fgeyer@debian.org> for the patch)
Closes: #683190
-- Andreas Tille <tille@debian.org> Thu, 09 Aug 2012 16:01:07 +0200
emboss (6.4.0-2) unstable; urgency=low
* Separate architecture-dependant and independant targets in debian/rules.
This makes the package buildable again on our build farm.
-- Charles Plessy <plessy@debian.org> Thu, 21 Jun 2012 14:31:59 +0900
emboss (6.4.0-1) unstable; urgency=low
[ Charles Plessy ]
* New upstream release.
* Removed calls to dh_makeshlibs in debian/rules (closes: #595613).
* Build on libpng-dev instead of libpng12-dev (closes: #662313).
* Breaks: EMBASSY <= 6.3.1 (debian/control).
[ Andreas Tille ]
* debian/upstream: separate reference section
* debian/rules:
- Make sure every binary package has a changelog file
- enable hardening
- do not clean backup file which is part of upstream tarball
- remove executable flag from some test data
- restore executable flag of some jemboss utils which seems to
be removed by install target
* debian/control:
- remove article from description
- Standards-Version: 3.9.3 (no changes needed)
* debian/emboss.menu: delete - chances that users will pick command
line programs from longish menu entries are pretty low
* debian/emboss-lib.lintian-overrides: Adapted string of lintian
warning
-- Charles Plessy <plessy@debian.org> Wed, 20 Jun 2012 18:55:16 +0900
emboss (6.3.1-6) unstable; urgency=low
* All EMBOSS libraries are to be considered private. The libajax* and
libnucleus* are merged in the emboss-lib package, which is moved
from the ‘libs’ to the ‘science’ section. Closes: #595613.
* Added a Lintian override for the convenience copy of the PCRE
library (debian/emboss-lib.lintian-overrides).
* Build-depend on libhpdf-dev for PDF support, removed erroneous build
dependance on libpcre3-dev (debian/control).
* Added dependance on emboss to jemboss (debian/control).
-- Charles Plessy <plessy@debian.org> Thu, 16 Sep 2010 21:06:14 +0900
emboss (6.3.1-5) unstable; urgency=low
* New upstream patch, version 1-4.
* Restore original config.* files in the clean target if the unpacked
source package is a git repository (debian/rules).
-- Charles Plessy <plessy@debian.org> Thu, 12 Aug 2010 08:00:58 +0900
emboss (6.3.1-4) unstable; urgency=low
* New upstream patch, version 1-2.
* Unset LS_COLORS in debian/rules (see #592089).
-- Charles Plessy <plessy@debian.org> Sat, 07 Aug 2010 23:03:10 +0900
emboss (6.3.1-3) unstable; urgency=low
* Use default Java instead of OpenJDK (debian/control, debian/rules,
closes: #590553, thanks to Petr Salinger).
* Incremented Standards-Version in debian/control to reflect conformance
with Debian Policy 3.9.1 (no changes needed).
-- Charles Plessy <plessy@debian.org> Wed, 28 Jul 2010 23:42:31 +0900
emboss (6.3.1-2) unstable; urgency=low
* First upstream patch for version 6.3.1 (debian/series,
debian/patches/official-upstream-patch.patch).
* Moved openjdk-6-jdk to Build-Depends (debian/control, closes: #589897).
-- Charles Plessy <plessy@debian.org> Fri, 23 Jul 2010 10:51:50 +0900
emboss (6.3.1-1) unstable; urgency=low
* New upstream release.
- Dropped debian/patches/official-upstream-patch.patch.
- Refreshed the manual pages (debian/*manpages*).
* Incremented Standards-Version in debian/control to reflect conformance
with Debian Policy 3.9.0 (no changes needed).
* Keep and restore a clean copy of the test directory, closes: #587170.
* Build against Debian's zlib and expat libraries (debian/rules,
debian/control, deleted debian/libajax6.lintian-overrides).
* Added support for MySQL and PostgreSQL (debian/control, debian/rules).
* Added symbols files for emboss-libs, libajax6 and libnucleus6. This
will prevent mixing incompatible binary packages (LP: 526356).
-- Charles Plessy <plessy@debian.org> Wed, 21 Jul 2010 15:24:07 +0900
emboss (6.2.0-2) unstable; urgency=low
* Updated debian/patches/official-upstream-patch.patch to version 1-19.
-- Charles Plessy <plessy@debian.org> Tue, 22 Jun 2010 17:01:44 +0900
emboss (6.2.0-1) unstable; urgency=low
* New upstream release.
* Dropped useless dependency on csh | c-shell for emboss (LP: 525662).
* Incremented Standards-Version in debian/control to reflect conformance
with Policy 3.8.4 (no changes needed).
* Detected a zlib convenience copy; added debian/emboss.lintian-overrides
until Upstream confirms that EMBOSS can build on latest pristine zlib
(See http://lists.open-bio.org/pipermail/emboss/2010-May/003915.html).
-- Charles Plessy <plessy@debian.org> Mon, 31 May 2010 15:13:09 +0900
emboss (6.1.0-5) unstable; urgency=low
* The source package is now managed with Git (debian/control).
- VCS URLs updated in debian/control.
* debian/changelog: corrected an error on a program name (vectorstrip).
* debian/patches/transient-vectorstrip.patch: keep quality scores.
* Two new patches not yet officialised:
- debian/patches/transient-vectorstrip.patch: retain quality scores.
- debian/patches/tfm-html.patch: corrects path to HTML documentation.
* Added Debian and FreeDesktop menu entries for Jemboss.
* Do not create a makefile when there is not at clean time (debian/rules).
* Documented how the package is tested in README.debian.
* Added various informations about Upstream in debian/upstream-metadata.yaml
-- Charles Plessy <plessy@debian.org> Mon, 09 Nov 2009 20:39:28 +0900
emboss (6.1.0-4) unstable; urgency=low
* New upstream patch (patch-1-2):
- Fix string extension so that pointers in lists remain valid.
- This fixes a bug in processing SwissProt complex descriptions.
- Fix definition of AJRESIZE0 macro.
- Fix processing of first match in a profile alignment (prophet).
* Delete /usr/share/EMBOSS/doc/programs/text/frestdist.txt, that
should belong to embassy-phylip (PHYLIPNEW). (debian/rules)
* Incremented Standards-Version in debian/control to reflect conformance
with Policy 3.8.3 (no changes needed).
* Removed the libtool libraries from the development packages (debian/rules).
-- Charles Plessy <plessy@debian.org> Tue, 25 Aug 2009 23:19:10 +0900
emboss (6.1.0-2) unstable; urgency=low
* New upstream patch (patch-1-1):
- Fix feature specification problems in Jemboss.
- Use version number to point to documentation URLs
- Remove standalone option from server script.
- Correct FASTQ input searching for '@' to start next sequence
- Standardize FASTQ sequence formats with other OpenBio projects
- Correct issues in igstrict, genpept and refseqp formats
* debian/control:
- Incremented Standards-Version to reflect conformance with Policy 3.8.2
(no changes needed).
* debian/copyright.introduction:
- Use symbolic links to refer to relevant versions of the GNU licenses.
-- Charles Plessy <plessy@debian.org> Sat, 01 Aug 2009 10:26:26 +0900
emboss (6.1.0-1) unstable; urgency=low
* New upstream release (Closes: #530112).
* Dropped patch against previous release.
* Created or refreshed the manpages.
-- Charles Plessy <plessy@debian.org> Wed, 15 Jul 2009 23:15:26 +0900
emboss (6.0.1-11) unstable; urgency=low
* New upstream patch (patch-1-12):
- Remove the 'aligned' attribute that was added in Fix 4.
- Fix crash if maxfragl > 40 selected.
- Update Entrez retrieval to cope with an extra line added
in the NCBI results.
- For phylogenetic applications (PHYLIPNEW) reading distance matrix files
failed for some formats written by other applications. Distance matrix
input now works for multiple matrices in square, upper-triangular and
lower-triangular formats.
-- Charles Plessy <plessy@debian.org> Sun, 17 May 2009 14:51:05 +0900
emboss (6.0.1-10) unstable; urgency=low
* New upstream patch (patch-1-8):
Incorrect information was often given in the subsidiary table
listing REs that would cut a greater number of times than an
optional user-supplied maximum number. The main role of
the program was unaffected.
-- Charles Plessy <plessy@debian.org> Tue, 21 Apr 2009 13:01:38 +0900
emboss (6.0.1-9) unstable; urgency=low
* New upstream patch (patch-1-7):
- Corrections on syntax using the master qualifier name as a suffix.
- Better support of the --without-x (not used in this package).
- Bug corrected for needle and water using the -nobrief option.
* debian/rules
- Corrected again the targets to avoid calling them when it is not
necessary.
- Defines emboss_acdroot, emboss_docroot and emboss_data in order
to run the tests.
-- Charles Plessy <plessy@debian.org> Wed, 08 Apr 2009 20:20:58 +0900
emboss (6.0.1-8) unstable; urgency=low
* debian/rules:
- Do not pass java options to the configure script if openjdk is not
installed (Closes: #521996, thanks to Peter Green).
- Recursive removal of emboss_tmp (to build the package twice in a row).
- Removed one `dh binary-indep` instance that strangely sneaked in after
running `svn update`.
* debian/control:
- Moved again openjdk-6-jdk to Build-Depends-Indep.
- Added debhelper's ${misc:Depends} substitution variable to the packages
that did not already depend on it.
-- Charles Plessy <plessy@debian.org> Tue, 31 Mar 2009 14:26:55 +0900
emboss (6.0.1-7) unstable; urgency=low
* debian/control: moved openjdk-6-jdk to Build-Depends.
Apologies to buildd administrators. (Closes: #521912).
-- Charles Plessy <plessy@debian.org> Tue, 31 Mar 2009 08:34:59 +0900
emboss (6.0.1-6) unstable; urgency=low
* debian/rules:
- Build arch all packages only when binary-indep is called
(Closes: #521398)
- Corrected stamping gymnastics.
* debian/control: moved openjdk-6-jdk to Build-Depends-Indep
-- Charles Plessy <plessy@debian.org> Mon, 30 Mar 2009 13:02:11 +0900
emboss (6.0.1-5) unstable; urgency=low
* New upstream patch (patch-1-6): correction for large pairwise alignments.
* debian/control:
- Incremented Standards-Version to reflect conformance with Policy 3.8.1
(no changes needed).
- Moved the bibliographic reference from the description of the EMBOSS
package to the file debian/reference.
-- Charles Plessy <plessy@debian.org> Wed, 25 Mar 2009 11:44:30 +0900
emboss (6.0.1-4) unstable; urgency=low
* New upstream patch (patch-1-5):
- removes unnecessary whitespaces in edialign.acd.
- saves Citations and comments in EMBL/GenBank formats for each new
entry processed.
* debian/control:
- Uses the official homepage URL as confirmed by Upstream.
- Redundant section field removed for jemboss.
- Description corrected for libnucleus6-dev.
* debian/rules:
- Pass --bindir=/usr/lib/emboss directly instead of moving files.
- Hardcode AJAX_FIXED_ROOT to /usr/share/EMBOSS (Closes: #487539).
- Replaced `dh_clean -k', deprecated, by dh_prep.
* debian/emboss.dir, debian/emboss.install: simplified after reworking
the installation of the binaries and their symbolic links.
-- Charles Plessy <plessy@debian.org> Sun, 22 Feb 2009 22:53:55 +0900
emboss (6.0.1-3) experimental; urgency=low
* New upstream patch (patch-1-3).
- fixes segmentation fault in vectorstrip when -auto is used with empty
vectorsfile.
- adds '.' trailer to the OS line in SwissProt output.
* debian/rules: corrected the section of the manual pages of the renamed
programs from 1 to 1e (Closes: #503733).
* Preliminary support for jEMBOSS:
- Build-Depend on openjdk-6-jdk (debian/control).
- New package "jemboss", depending on openjdk-6-jre (debian/control).
- The jemboss package contains everything installed by the command
`make -C jemboss install' (debian/rules).
-- Charles Plessy <plessy@debian.org> Wed, 26 Nov 2008 08:57:20 +0900
emboss (6.0.1-2) experimental; urgency=low
* New upstream patch (patch-1-1).
- jaspscan can now scan multiple sequences.
- "digest -allpartials" now reports all C-term fragments.
-- Charles Plessy <plessy@debian.org> Wed, 27 Aug 2008 22:11:45 +0900
emboss (6.0.1-1) experimental; urgency=low
* New upstream release:
- New applications: aligncopy, aligncopypair, consambig, density,
featcopy, featreport, infobase, inforesidue, jaspextract, jaspscan,
maskambignuc, maskambigprot, nohtml, nospace, notab, sizeseq,
skipredundant, trimspace.
- See `/usr/share/doc/emboss/changelog.gz' for more details.
* debian/patches:
- Removed the patches that are obsoleted by the new release.
- Documented the local patch on `tfm' that changes default pager.
* debian/README.source added to document how to patch and unpatch the
sources.
* debian/emboss-doc.doc-base.{apps/groups} corrected for new file locations.
* debian/control:
- Replaced build dependency on deprecated x-dev by x11proto-core-dev.
- Uses debhelper 7.
- Incremented the soname of the AJAX and NUCLEUS libraries (conflict and
replace the previous versions).
- Incremented Standards-Version to 3.8.0 after adding README.Sources.
- Added a new package, emboss-test, that contains test data.
- Build-Depends: tcsh | csh | c-shell to run the tests.
* debian/rules:
- Implemented build-time tests.
- Updated the instructions to build manpages.
-- Charles Plessy <plessy@debian.org> Thu, 17 Jul 2008 14:07:40 +0900
emboss (5.0.0-7) unstable; urgency=low
* Changed the doc-base section according to the new policy.
* Updated my email address.
* Updated the contact address in the manpages.
-- Charles Plessy <plessy@debian.org> Fri, 16 May 2008 19:58:37 +0900
emboss (5.0.0-6) unstable; urgency=low
* New bugfixes released upstream:
- Fixes failure on some databases if the PAGESIZE was set large
and the CACHESIZE was set small.
- Platform-independence modifications added.
* debian/README.Debian: described the change of default pager for tfm.
-- Charles Plessy <charles-debian-nospam@plessy.org> Fri, 07 Mar 2008 10:15:31 +0900
emboss (5.0.0-5) unstable; urgency=low
* New bugfixes released upstream.
- Fixes changed ID format in GCG databases.
- Fixes reading from PIR databases.
- Fixes a problem with O in protein sequences for pyrrolysine.
- Fixes a problem in GENBANK output format.
- Fixes a problem in reading protein sequences from Staden
"spin" interface.
- Fixes tokens that are longer than the maximum length.
- debian/patches now uses the monolithic upstream patch instead of
file-per-file fixes. You can find longer explanations in the header
of debian/patches/patch-1-3.
-- Charles Plessy <charles-debian-nospam@plessy.org> Sat, 01 Mar 2008 11:46:26 +0900
emboss (5.0.0-4) unstable; urgency=low
* debian/patches:
- using-pager-in-tfm.patch:
Patching tfm so that it uses the alternatives system `/usr/bin/pager'
if the `PAGER' environment variable is not defined.
- embindex-fix-2008-01-19.patch:
Official fix 3. EMBOSS-5.0.0/nucleus/embindex.c 18 Jan 2008.
Order and fill fixes to sort out potential problems with kw/de/tx
indexes.
-- Charles Plessy <charles-debian-nospam@plessy.org> Wed, 23 Jan 2008 20:56:22 +0900
emboss (5.0.0-3) unstable; urgency=low
[ Nelson A. de Oliveira ]
* Using bzip2 compression for packages. This saves about 832KB of space.
[ Charles Plessy ]
* debian/patches/ajindex-fix-2008-01-09.patch:
- Fixes rare secondary index problem with input files over 2Gb.
* debian/control:
- Switched maintainership to the Debian-Med packaging team.
- Relocated the package to the Debian-Med Subversion repository.
- Allowed upload by Debian Maintainers.
- Checked that the package is compliant to Policy 3.7.3
- Added dialign again to the Recommends: field. It only disappeared from
the documentation; the edialign program is still there.
- -dev packages now depend on their corresponding libraries.
- Replaced occurrences of $(source:Version} by ${binary:Version} to make
the packages binNMU safe.
- emboss-data and emboss-doc do not Suggest: emboss anymore.
- Changed the description of libajax5 and libnucleus5 so that they are not
identical.
- Removed the XS- prefix in the Vcs fields.
- Build-depends on autotools-dev.
* debian/rules:
- Removes Makefiles ignored by make distclean in the test directory.
- Uses config.(sub|guess) from the autotools-dev package.
-- Charles Plessy <charles-debian-nospam@plessy.org> Thu, 10 Jan 2008 21:27:31 +0900
emboss (5.0.0-2) unstable; urgency=low
[ Charles Plessy ]
* Using a emboss/psiphi.c file fixed by upstream
ftp://emboss.open-bio.org/pub/EMBOSS/fixes/psiphi.c
* Documentation:
- Building the manpages offline to save buildd time, therefore not
depending anymore on the XML toolchain.
- Added a "e" suffix to the manpages, to avoid conflicts.
(Closes: #427439)
- Linked /usr/share/emboss-doc/doc/ to /usr/share/EMBOSS/docs, and
registered documentation in doc-base. (Closes: #423941)
* Gave their own packages to the AJAX and NUCLEUS libraries.
- Header files are in /usr/include/ajax and /usr/include/nucleus.
- The private pcre files are kept under /usr/include/ajax. (Closes: #433316)
* Packaging:
- Removed the extra Tag field in debian/control.
- Removed the recommendation on dialign, as edialign disappeared.
- Tightened the Depends: relationship between emboss and
emboss-lib (Closes: #435232).
- Removed inactive developer from the uploaders list.
- Suggests: embassy.
* Temporarily incorporates a relicenced version of the EMBOSS Quick
Guide, until it becomes part of the original tarball. Its sources
are shipped uuencoded, therefore emboss now build-depends on sharutils.
[ Nelson A. de Oliveira ]
* Checked and fixed clean target. (Closes: #442554).
-- Charles Plessy <charles-debian-nospam@plessy.org> Sat, 13 Oct 2007 15:05:53 +0900
emboss (5.0.0-1) unstable; urgency=low
* New upstream version
* Renaming cons and pscan to em_cons and em_pscan, see README.Debian
for more information.
* Moved all the binaries to /usr/lib/emboss. /usr/bin contains only
symbolic links (Closes : #427439, #427440).
* Makes sure that there is a Makefile before invoking the clean rule.
* Added /etc/emboss/embossrc.d directory for future modular
configuration.
* Switched from dpatch to quilt (no patches for the moment).
* Build-depend on libemboss-acd-perl to generate manpages with
acd2docbook.pl, written especially for this package (Closes: #423938).
* Adding a placeholder file to force the inclusion of debian/manpages.
* Removing the entries in the Debian menu until we agree that we
want them.
-- Charles Plessy <charles-debian-nospam@plessy.org> Thu, 19 Jul 2007 13:56:11 +0900
emboss (4.1.0-1) experimental; urgency=low
* New maintainer and uploaders
* First official release (Closes: #156276)
* Xlib transition.
* Using dpatch and /usr/share/dpatch/dpatch.make to manage patches.
* Added XS-Vcs entries in debian/changelog.
* Removed the pcre includes from the emboss-libs package.
* Fixed watch file.
* Emboss Recommends:dialign and Suggests:clustalw.
-- Charles Plessy <charles-debian-nospam@plessy.org> Mon, 12 Mar 2007 08:26:15 +0900
emboss (2.8.0-2) unstable; urgency=low
* Fixed manpages being in both emboss and emboss-lib
* Removed circ.dep. emboss <-> emboss-lib
-- Matt Hope <dopey@debian.org> Fri, 21 May 2004 12:47:47 +1000
emboss (2.8.0-1) unstable; urgency=low
* New upstream release
-- Matt Hope <dopey@debian.org> Fri, 5 Dec 2003 15:08:54 +1100
emboss (2.7.1-1) unstable; urgency=low
* New upstream release
* emboss-lib
- Fixed the shlibs.
-- Matt Hope <matth@bioinformatics.unsw.edu.au> Mon, 7 Jul 2003 14:36:14 +1000
emboss (2.6.0-1) unstable; urgency=low
* New upstream release
-- Matt Hope <matth@bioinformatics.unsw.edu.au> Mon, 07 Apr 2003 21:41:12 +1000
emboss (2.4.1-1) unstable; urgency=low
* Initial package.
Thanks for the feedback from everyone.
(Closes: Bug#156276 ITP)
-- Matt Hope <matth@bioinformatics.unsw.edu.au> Sat, 6 Jul 2002 01:11:17 +1000