exonerate (2.4.0-5) unstable; urgency=medium
* Standards-Version: 4.5.1 (routine-update)
* debhelper-compat 13 (routine-update)
* autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Update watch file format version to 4.
* Set field Upstream-Name in debian/copyright.
* Refer to specific version of license GPL-3+.
* Remove obsolete field Name from debian/upstream/metadata (already present in
machine-readable debian/copyright).
-- Andreas Tille <tille@debian.org> Thu, 03 Dec 2020 21:56:27 +0100
exonerate (2.4.0-4) unstable; urgency=medium
[ Jelmer Vernooij ]
* Trim trailing whitespace.
* Use secure copyright file specification URI.
[ Andreas Tille ]
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.3.0
* Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
-- Andreas Tille <tille@debian.org> Sun, 06 Jan 2019 22:02:34 +0100
exonerate (2.4.0-3) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata: Added references to registries.
[ Helmut Grohne ]
* make pkg-config macro cross compilation safe
Closes: #888032
[ Andreas Tille ]
* debhelper 11
* Standards-Version: 4.1.3
-- Andreas Tille <tille@debian.org> Tue, 23 Jan 2018 11:37:37 +0100
exonerate (2.4.0-2) unstable; urgency=medium
[ Canberk Koç ]
* Team upload
* debian/tests: added testsuite
* debian/rules: changes for testing
[ Andreas Tille ]
* cme fix dpkg-control
-- Canberk Koç <canberkkoc@gmail.com> Wed, 18 May 2016 14:11:15 +0200
exonerate (2.4.0-1) unstable; urgency=medium
* New upstream version
* Moved packaging from SVN to Git
* Better hardening
-- Andreas Tille <tille@debian.org> Sun, 20 Mar 2016 12:24:30 +0100
exonerate (2.2.0-7) unstable; urgency=low
[ Charles Plessy ]
* renamed debian/upstream-metadata.yaml to debian/upstream/metadata
[ Andreas Tille ]
* debian/upstream/metadata:
- Took over some detail from tasks file; moved DOI+PMID
to References
- Added eprint
* debian/reference removed in favour of debian/upstream/metadata
* debian/copyright: Deleted bouncing upstream contact address
* fixed upstream homepage
* fix watch file
* do not maintain duplicated information in debian/upstream/metadata
* cme fix dpkg-control
* debhelper 9
* DEP5
* fix spelling and manpage syntax issues
* remove outdated README.Debian
-- Andreas Tille <tille@debian.org> Mon, 11 Jan 2016 09:54:39 +0100
exonerate (2.2.0-6) unstable; urgency=low
* debian/patches/autoreconf.patch: Removed because not needed
when using dh-autoreconf
-- Andreas Tille <tille@debian.org> Thu, 12 Jan 2012 11:29:32 +0100
exonerate (2.2.0-5) unstable; urgency=low
* Rather use dh-autoreconf as advised in another patch from
Micah Gersten <micahg@ubuntu.com> (thanks for your patience)
Finally Closes #651802
-- Andreas Tille <tille@debian.org> Thu, 12 Jan 2012 11:11:06 +0100
exonerate (2.2.0-4) unstable; urgency=low
* Use autotools_dev properly
Closes: #651802
-- Andreas Tille <tille@debian.org> Fri, 06 Jan 2012 23:04:31 +0100
exonerate (2.2.0-3) unstable; urgency=low
[ Charles Plessy ]
* Documented some meta-information in ‘debian/upstream-metadata.yaml’.
[ Andreas Tille ]
* debian/source/format: 3.0 (quilt)
* debian/control:
- Standards-Version: 3.9.2 (no changes needed)
- Fixed Vcs fields
* Debhlper 8 (control+compat)
* debian/copyright: some DEP5 changes
* debian/patches/fix_build-as-needed.patch: Fix build with --as-needed
(Thanks to Micah Gersten <micahg@ubuntu.com>)
Closes: #651802
* debian/patches/autoreconf.patch: Build with recent autotools
* debian/patches/manpages.patch: Fix some lintian warnings
* debian/rules:
- Convert to short dh notation
- Remove codegen in clean target
- Install upstream changelog only once
-- Andreas Tille <tille@debian.org> Mon, 12 Dec 2011 13:13:02 +0100
exonerate (2.2.0-2) unstable; urgency=low
[ Charles Plessy ]
* debian/control:
- Enhances bioperl-run instead of bioperl.
- Incremented Standards-Version to reflect conformance with Policy
3.8.3 (no changes needed).
[ Andreas Tille ]
* debian/control
- s/libreadline5-dev/libreadline-dev/
- s/Debian-Med/Debian Med/
-- Andreas Tille <tille@debian.org> Sun, 13 Sep 2009 17:34:07 +0200
exonerate (2.2.0-1) unstable; urgency=low
* New upstream release (LP: #285237).
This version includes fixes for problems with excessive memory consumption
when compiled against glib-2, and fixes a bug with using exonerate-server
with unmasked sequences.
-- Charles Plessy <plessy@debian.org> Mon, 20 Oct 2008 14:18:36 +0200
exonerate (2.1.0-1) unstable; urgency=low
* New upstream release (LP: #254115).
- This version includes many optimisations and bug fixes for the
exonerate-server. It is now possible to search a whole human-sized
genome with a typical cDNA or protein query in under a second.
- Exonerate-server uses use pthreads by default.
* debian/control, debian/compat: switched to debhelper 7.
* debian/control:
- Checked conformance with Policy 3.8.0.
- Enhances: bioperl.
* debian/rules:
- `--enable-glib2' removed as now default.
- Activated tests after build.
* Updated debian/copyright.
-- Charles Plessy <plessy@debian.org> Mon, 04 Aug 2008 19:13:05 +0900
exonerate (2.0.0-1) unstable; urgency=low
[ David Paleino ]
* Updated to Standards-Version 3.8.0 (no changes needed)
[ Charles Plessy ]
* New upstream release (Closes: #479323)
Quoting the upstream changelog:
o Modified exonerate to work in Client:Server mode
o Fixed --refine to work with SDP alignments
o Disabled codegen warnings from bootstrapper during compilation
o Added --geneticcode option for using alternative genetic codes
o Added --splice5 and --splice3 to allow alternative splice site PSSMs
o Fixed several bugs when scanning query sequences (eg. --forcescan query)
o Fixed to report query on forward strand whenever possible.
o Fixed --ryo sequence dumping with --bestn
o Fixed a bug with missing seeds when using --annotation
o Changed license to GPLv3
o Added protein2dna:bestfit and protein2genome:bestfit models
(works with exhaustive alignment only)
* Updated my email address.
* debian/control:
- Building on glib-2.0 instead of 1.2.
- Added a build dependency on libreadline5-dev.
- Augmented the long description and changed the short.
- Added a build dependency on CDBS.
* debian/copyright made machine-readable.
* debian/rules switched to cdbs.
* debian/dirs: removed.
-- Charles Plessy <plessy@debian.org> Wed, 02 Jul 2008 11:24:48 +0900
exonerate (1.4.0-1) unstable; urgency=low
* Initial release (Closes: #431404).
-- Steffen Moeller <moeller@debian.org> Mon, 02 Jul 2007 11:42:38 +0200