genometools (1.6.5+ds-2~bpo12+1) bookworm-backports; urgency=medium * Rebuild for bookworm-backports. -- Sascha Steinbiss Mon, 30 Oct 2023 09:58:15 +0100 genometools (1.6.5+ds-2) unstable; urgency=medium * Facilitate building twice from the same source directory. Closes: #1044467 -- Sascha Steinbiss Thu, 26 Oct 2023 00:08:09 +0200 genometools (1.6.5+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Tue, 24 Oct 2023 13:28:17 +0200 genometools (1.6.4+ds-1) unstable; urgency=medium * New upstream release. * Drop README from docs list (removed upstream). -- Sascha Steinbiss Sun, 08 Oct 2023 22:58:24 +0200 genometools (1.6.3+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Tue, 19 Sep 2023 23:26:57 +0200 genometools (1.6.2+ds-3) unstable; urgency=medium [ Nilesh Patra ] * Use arch:any instead of the elaborate arch list that includes all release archs anyway Closes: #1024982 [ Andreas Tille ] * Create proper file name in watch file * Delete debian/gbp.conf * Standards-Version: 4.6.1 (routine-update) * Add salsa-ci file (routine-update) * Update renamed lintian tag names in lintian overrides. * Set field Upstream-Contact in debian/copyright. * Set upstream metadata fields: Repository-Browse. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * lintian-overrides (see lintian bug #1017966) -- Andreas Tille Mon, 28 Nov 2022 15:54:54 +0100 genometools (1.6.2+ds-2) unstable; urgency=medium * Upload to unstable post-release. -- Sascha Steinbiss Tue, 17 Aug 2021 10:21:36 +0200 genometools (1.6.2+ds-1) experimental; urgency=medium * New upstream release. * Remove patch applied upstream. * Bump Standards-Version. * Use debhelper 13. * Set Rules-Requires-Root: no. -- Sascha Steinbiss Thu, 24 Jun 2021 20:38:56 +0200 genometools (1.6.1+ds-5~exp1) experimental; urgency=medium * Remove dependency on libpth20. Closes: #987297 -- Sascha Steinbiss Wed, 21 Apr 2021 20:00:56 +0200 genometools (1.6.1+ds-3) unstable; urgency=medium * Add patch to fix build on GCC 10. Closes: #957268 -- Sascha Steinbiss Wed, 22 Jul 2020 13:00:06 +0200 genometools (1.6.1+ds-2) unstable; urgency=medium * Use static images for AnnotationSketch documentation. This improves reproducibility in cases where (on some platforms) different runs would create different images. -- Sascha Steinbiss Sun, 09 Feb 2020 09:33:24 +0100 genometools (1.6.1+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Wed, 08 Jan 2020 21:20:57 +0100 genometools (1.6.0+ds-1) unstable; urgency=medium * New upstream release. * Use debhelper-compat. -- Sascha Steinbiss Mon, 06 Jan 2020 12:39:45 +0100 genometools (1.5.10+ds-5) unstable; urgency=medium * Source upload to enable transition to testing. * Bump Standards-Version. -- Sascha Steinbiss Tue, 17 Dec 2019 22:31:28 +0100 genometools (1.5.10+ds-4) unstable; urgency=medium * Build Python3 bindings package instead of Python2. * Use debhelper 12. * Bump Standards-Version. * Update lintian override location and tags. -- Sascha Steinbiss Sun, 08 Sep 2019 17:11:59 +0200 genometools (1.5.10+ds-3) unstable; urgency=medium * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Secure URI in copyright format * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Do not parse d/changelog * Remove unused patches -- Andreas Tille Sun, 28 Oct 2018 14:54:51 +0100 genometools (1.5.10+ds-2) unstable; urgency=medium * Ensure that src/external is not repopulated by patches. Closes: #883848 * Bump Standards-Version. -- Sascha Steinbiss Fri, 08 Dec 2017 12:58:57 +0100 genometools (1.5.10+ds-1) unstable; urgency=medium * New upstream release. * Drop and update patches applied upstream. * Bump Standards-Version. * Drop obsolete -dbg package. -- Sascha Steinbiss Sun, 06 Aug 2017 16:33:26 +0200 genometools (1.5.9+ds-5) unstable; urgency=medium * Change test data to make run less problematic. This addresses an FTBFS in Ubuntu. Thanks to Graham Inggs for the hint. * Switch latex-xcolor dependency to texlive-latex-recommended. Thanks to Norbert Preining for the hint. Closes: #865248 -- Sascha Steinbiss Tue, 10 Jan 2017 17:14:25 +0100 genometools (1.5.9+ds-4) unstable; urgency=medium * Switch asciidoc dependency to asciidoc-base. Closes: #850341 * Fix minor spelling issues in help output. -- Sascha Steinbiss Fri, 06 Jan 2017 10:13:08 +0100 genometools (1.5.9+ds-3) unstable; urgency=medium * Remove hardcoded number of threads from testsuite call. Closes: #836283 * Make build reproducible. - Remove absolute include path to make __FILE__ use relative paths. - Remove PDF trailer IDs. - Remove build directory from CFLAGS dumped to gt_config.h. * Enable verbose build output. * Add dependency on docbook-xml. -- Sascha Steinbiss Thu, 01 Sep 2016 17:16:40 +0000 genometools (1.5.9+ds-2) unstable; urgency=medium * Use fixed date in split manual source. -- Sascha Steinbiss Sat, 23 Jul 2016 10:54:26 +0000 genometools (1.5.9+ds-1) unstable; urgency=medium * New upstream release. * Update patches. -- Sascha Steinbiss Fri, 22 Jul 2016 11:36:37 +0000 genometools (1.5.8+ds-4) unstable; urgency=medium * Make documentation builds reproducible. - Add extra date fields to developer's guide and matstat manual. * Update uploader email address. * Bump Standards-Version. -- Sascha Steinbiss Sat, 02 Jul 2016 12:24:14 +0000 genometools (1.5.8+ds-3) unstable; urgency=medium * Remove explicit -m32 and -m64. * Fix dates in manuals (cf upstream PR #780) for reproducibility. * Remove unnecessary maintainer scripts. * Update upstream metadata. -- Sascha Steinbiss Wed, 27 Apr 2016 09:25:08 +0000 genometools (1.5.8+ds-2) unstable; urgency=medium * Fix locale (LC_PAPER) for LaTeX runs (reproducibility). * Patch documentation generation to gather API symbols in deterministic order. * Do not delete two docu files in clean step. -- Sascha Steinbiss Fri, 11 Mar 2016 16:10:42 +0000 genometools (1.5.8+ds-1) unstable; urgency=medium * Make sure external headers are used for compilation. Thanks to Justus Winter for the patch. * Add some more spelling fixes. * Exclude included third-party library code. * Use xz compression for repacked tarballs. * Use upstream distributions from GitHub. -- Sascha Steinbiss Wed, 02 Mar 2016 15:43:46 +0000 genometools (1.5.8-2) unstable; urgency=medium * Document migration to Git in d/control * Remove unused python-ctypes dependency * Update Standards-Version * Add dh-python to Build-Depends * Fix spelling -- Sascha Steinbiss Sun, 07 Feb 2016 10:10:25 +0000 genometools (1.5.8-1) unstable; urgency=medium * New upstream release. * Ensure that /usr/share/genometools/* is complete. * Fix spelling. -- Sascha Steinbiss Thu, 07 Jan 2016 22:18:31 +0000 genometools (1.5.7-7) unstable; urgency=medium * build API documentation reproducibly -- Sascha Steinbiss Sat, 12 Dec 2015 19:13:40 +0000 genometools (1.5.7-6) unstable; urgency=medium * Reintroduce mips64el which was removed my mistake. * Fix detection of x32 build -- Sascha Steinbiss Wed, 09 Dec 2015 22:20:47 +0000 genometools (1.5.7-5) unstable; urgency=medium * Try to load correct renamed .so file in Python bindings * Refresh patches * Use DEB_TARGET_ARCH to determine build archs -- Sascha Steinbiss Tue, 08 Dec 2015 00:42:49 +0000 genometools (1.5.7-4) unstable; urgency=medium * Fix builds on less popular platforms - Check if faketime works - Do no use -m32/-m64 on x32 * Improve reproducibility - sort files to compile by name * Add autopkgtests -- Sascha Steinbiss Fri, 04 Dec 2015 22:18:11 +0000 genometools (1.5.7-3) unstable; urgency=low * d/control: remove obsolete dependency on libncurses5 Closes: #804576 -- Sascha Steinbiss Mon, 09 Nov 2015 19:15:29 +0000 genometools (1.5.7-2) unstable; urgency=low * disable parallel building -- Sascha Steinbiss Sat, 10 Oct 2015 12:04:37 +0000 genometools (1.5.7-1) unstable; urgency=low * New upstream release. * d/rules: try ro improve reproducibility -- Sascha Steinbiss Sun, 13 Sep 2015 08:22:39 +0000 genometools (1.5.6-1) unstable; urgency=low * New upstream release. -- Sascha Steinbiss Mon, 22 Jun 2015 19:26:35 +0000 genometools (1.5.5-2) unstable; urgency=low * Disable faketime on hurd-i386 to fix FTBFS on that arch. -- Sascha Steinbiss Wed, 10 Jun 2015 10:03:22 +0000 genometools (1.5.5-1) unstable; urgency=low * New upstream release. -- Sascha Steinbiss Sat, 06 Jun 2015 09:49:49 +0000 genometools (1.5.4-2) experimental; urgency=low * Work towards reproducibility. -- Sascha Steinbiss Sun, 22 Mar 2015 08:09:07 +0000 genometools (1.5.4-1) experimental; urgency=low * New upstream release. -- Sascha Steinbiss Fri, 12 Dec 2014 12:06:42 +0000 genometools (1.5.3-2) unstable; urgency=low * Reactivate missing patch. -- Sascha Steinbiss Fri, 05 Sep 2014 14:23:31 +0100 genometools (1.5.3-1) unstable; urgency=low * New upstream release. -- Sascha Steinbiss Wed, 16 Jul 2014 20:32:19 +0100 genometools (1.5.2-4) unstable; urgency=low * Incorporate patches addressing type conversion errors (thanks to Michael Tautschnig). Closes: #748305 -- Sascha Steinbiss Sat, 24 May 2014 18:57:45 +0000 genometools (1.5.2-3) unstable; urgency=low * Address building issues on s390x, powerpc and armhf * Don't use -m64 for arm64 (thanks to Logan Rosen) Closes: #748708 * Build-depend on docbook-xsl to fix FTBFS while offline (thanks to Logan Rosen) Closes: #748709 -- Sascha Steinbiss Mon, 19 May 2014 23:06:34 +0000 genometools (1.5.2-2) unstable; urgency=low * Split manuals into separate documents to avoid strange LaTeX build issues. -- Sascha Steinbiss Thu, 15 May 2014 23:23:20 +0000 genometools (1.5.2-1) unstable; urgency=low * New upstream release. * Remove symbols file because private symbols are exported (next upstream version will properly control exported symbols and a new symbols file will be created and maintained) * Remove manpages from debian directory as they are now autogenerated on build * Fix some missing symbols problems -- Sascha Steinbiss Thu, 15 May 2014 10:51:41 +0000 genometools (1.5.1-3) unstable; urgency=low * debian/rules - Add basic tests to check whether cairo/pango linking works - Clean up indices created by tests to make repeated builds possible - Make sure bin/examples/sketch_parsed_with_* are built - Enable compiler optimization * debian/control - Move libgenometools0 package into libs section - Switch pango deps to new package - Add ruby builddep, required for the testsuite -- Sascha Steinbiss Wed, 06 Nov 2013 14:28:41 +0100 genometools (1.5.1-2) unstable; urgency=low * debian/control - Add myself to Uploaders - cme fix dpkg-control - Follow liblua package name transition Closes: #728017 - Remove depends from virtual package python-ctypes which is provided by python * provide symbols file -- Andreas Tille Mon, 28 Oct 2013 08:17:04 +0100 genometools (1.5.1-1) unstable; urgency=low * New upstream release. -- Sascha Steinbiss Thu, 07 Mar 2013 14:08:05 +0100 genometools (1.5.0-2) unstable; urgency=low * Patch manuals not to use includecomment/excludecomment -- Sascha Steinbiss Sat, 16 Feb 2013 16:58:11 +0100 genometools (1.5.0-1) unstable; urgency=low * New upstream release * bugfixes and cleanups * development tool `gt sain' added to run an induced suffix array sorting algorithm * the -typecheck option in the `gt gff3` and `gt gff3validator` tools now also validates parent (part-of) relationships, see -help output for details * new option -encseq besides -seqfile(s) and -regionmapping to select a encseq index as a sequence source * GtBioseq backend switched to GtEncseq * GtSeqCol is now an interface, GtEncseqCol added * GtRankedList added * GtSNPAnnotatorStream and `gt snpper' tool added * node sorting code is now aware of MD5 hash presence * compatibility with old Pango versions inproved -- Sascha Steinbiss Tue, 05 Feb 2013 18:52:22 +0100 genometools (1.4.2-4) unstable; urgency=low * Remove shlibs.local file -- Sascha Steinbiss Tue, 09 Oct 2012 12:24:17 +0200 genometools (1.4.2-3) unstable; urgency=low * Build with pbuilder to obtain reasonable libc dependency (>= 2.13) -- Sascha Steinbiss Tue, 09 Oct 2012 10:04:34 +0200 genometools (1.4.2-2) unstable; urgency=low * Fixed libpango-dev dependency * Updated manpages -- Sascha Steinbiss Mon, 08 Oct 2012 07:51:52 +0200 genometools (1.4.2-1) unstable; urgency=low * New upstream release [ Sponsor Steffen Moeller ] * Update of policy to 3.9.4 * Added DMUA flag -- Sascha Steinbiss Fri, 05 Oct 2012 15:47:56 +0200 genometools (1.4.1-1) unstable; urgency=low * Initial release (Closes: #657923) * the GFF3 parser now handles children which are defined before their parents * many small improvements to the GFF3 parser -- Sascha Steinbiss Mon, 09 Jul 2012 14:10:23 +0100