Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: HMMER Upstream-Contact: Sean R. Eddy Source: http://hmmer.org/download.html Files-Excluded: */libdivsufsort */.gitignore Files: * Copyright: 1992-2010 Sean R. Eddy Howard Hughes Medical Institute 1992-2004 Washington University School of Medicine 1992-1994 MRC Laboratory of Molecular Biology License: GPL-3 Files: easel/* Copyright: 2004-2009 Sean R. Eddy 2006-2009 Howard Hughes Medical Institute License: The-Janelia-Farm-Software-License Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: . 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. . 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. . 3. Neither the name of the Howard Hughes Medical Institute nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ANY IMPLIED WARRANTIES OF MERCHANTABILITY, NON-INFRINGEMENT, OR FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; REASONABLE ROYALTIES; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Files: debian/* Copyright: 1998 John Lapeyre 1999-2001 Matthew Vernon 2006-2007 Nelson A. de Oliveira 2008-2012 Andreas Tille Charles Plessy 2010 Eric Talevich , 2010 Steffen Möller 2012-2017 Andreas Tille License: GPL-3 License: GPL-3 This package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License version 3 as published by the Free Software Foundation. . This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this package; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA . On Debian systems, the complete text of the GNU General Public License can be found in `/usr/share/common-licenses/GPL-3'. Files: easel/esl_sse.* easel/esl_vmx.* Copyright: 2007 Julien Pommier 1992 Stephen Moshier 2015 Howard Hughes Medical Institute License: as-is This software is provided 'as-is', without any express or implied warranty. In no event will the authors be held liable for any damages arising from the use of this software. . Permission is granted to anyone to use this software for any purpose, including commercial applications, and to alter it and redistribute it freely, subject to the following restrictions: . 1. The origin of this software must not be misrepresented; you must not claim that you wrote the original software. If you use this software in a product, an acknowledgment in the product documentation would be appreciated but is not required. 2. Altered source versions must be plainly marked as such, and must not be misrepresented as being the original software. 3. This notice may not be removed or altered from any source distribution. . In turn, Pommier had derived the logf() and expf() functions from serial versions in the Cephes math library. According to its readme, Cephes is "copyrighted by the author" and "may be used freely but it comes with no support or guarantee." Cephes is available in NETLIB [http://www.netlib.org/cephes/]. NETLIB is widely considered to be a free scientific code repository, though the copyright and license status of many parts, including Cephes, is ill-defined. We have attached Moshier's copyright, to credit his original contribution. Thanks to both Pommier and Moshier for their clear code.