hyphy (2.5.47+dfsg-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Sun, 05 Feb 2023 20:48:53 +0100
hyphy (2.5.46+dfsg-1) unstable; urgency=medium
* New upstream version
* Standards-Version: 4.6.2 (routine-update)
-- Andreas Tille <tille@debian.org> Tue, 24 Jan 2023 15:50:21 +0100
hyphy (2.5.42+dfsg-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Thu, 22 Sep 2022 09:13:46 +0200
hyphy (2.5.41+dfsg-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Wed, 24 Aug 2022 14:08:01 +0200
hyphy (2.5.40+dfsg-1) unstable; urgency=medium
* New upstream version 2.5.40+dfsg
* d/*.lintian-overrides: refresh overrides to new convention.
-- Étienne Mollier <emollier@debian.org> Fri, 15 Jul 2022 10:08:29 +0200
hyphy (2.5.39+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* Proper filename for upstream tarball
[ Étienne Mollier ]
* New upstream version
* Standards-Version: 4.6.1 (routine-update)
-- Étienne Mollier <emollier@debian.org> Tue, 31 May 2022 19:37:50 +0200
hyphy (2.5.38+dfsg-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Mon, 02 May 2022 12:18:35 +0200
hyphy (2.5.36+dfsg-1) unstable; urgency=medium
* New upstream version
-- Étienne Mollier <emollier@debian.org> Fri, 11 Feb 2022 13:35:31 +0100
hyphy (2.5.33+dfsg-1) unstable; urgency=medium
* New upstream version
* Standards-Version: 4.6.0 (routine-update)
-- Nilesh Patra <nilesh@debian.org> Tue, 19 Oct 2021 10:07:52 +0000
hyphy (2.5.32+dfsg-1) unstable; urgency=medium
* New upstream version 2.5.32+dfsg
* Refresh d/p/use_debian_sqlite.patch, do not impose ZLIB
changes on the same patch so as to avoid confusion
* d/p/set-zlib-after-setting-default-libs.patch: Check for existence
of ZLIB *after* DEFAULT_LIBRARIES have been set
-- Nilesh Patra <nilesh@debian.org> Wed, 25 Aug 2021 19:44:43 +0530
hyphy (2.5.31+dfsg-1) unstable; urgency=medium
[ Michael R. Crusoe ]
* Removed spelling patch, it was merged upstream
[ Étienne Mollier ]
* Remove d/*.maintscriptsL: these have been brought in
the earlier release of hyphy 2.5.28+dfsg-3
* d/control: update uploader address
* d/watch: fix broken link to github
[ Nilesh Patra ]
* d/watch: Fix watch regex
* New upstream version 2.5.31+dfsg
* d/p/*.patch: Refresh patches
* d/p/use_debian_sqlite.patch: Check for existence of
ZLIB *after* DEFAULT_LIBRARIES have been set
* Fix copyright
-- Nilesh Patra <nilesh@debian.org> Sun, 15 Aug 2021 19:06:23 +0530
hyphy (2.5.28+dfsg-3) unstable; urgency=medium
* d/*.maintscript: handle symbolic link removal in hyphy 2.5.18+dfsg-1.
Closes: #985284
-- Étienne Mollier <etienne.mollier@mailoo.org> Tue, 16 Mar 2021 21:52:00 +0100
hyphy (2.5.28+dfsg-2) unstable; urgency=medium
* Team upload.
* debian/rules: set LC_ALL to fix groff warnings in the manpages
* debian/patches/spelling: fix some typos
* debian/rules: delete erroneous rpath for the MPI binaries
* debian/rules: improve the clean target
-- Michael R. Crusoe <crusoe@debian.org> Sat, 20 Feb 2021 10:57:19 +0100
hyphy (2.5.28+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version
* debian/tests/run-unit-tests: don't skip four tests that are now passing
-- Michael R. Crusoe <crusoe@debian.org> Fri, 19 Feb 2021 17:15:31 +0100
hyphy (2.5.27+dfsg-4) unstable; urgency=medium
* Team upload.
* Fix arch independent build issue which cause the amd64 autopkgtests to
fail.
* On amd64, run the build-time tests the SIMD varients that are supported by
the build-time CPU.
-- Michael R. Crusoe <crusoe@debian.org> Sun, 31 Jan 2021 11:05:20 +0100
hyphy (2.5.27+dfsg-3) unstable; urgency=medium
* Team upload.
* Fix arch independent build.
* debian/control: mark hyphy-common as Multi-Arch: foreign
-- Michael R. Crusoe <crusoe@debian.org> Sat, 30 Jan 2021 12:52:56 +0100
hyphy (2.5.27+dfsg-2) unstable; urgency=medium
* Team upload.
* Refresh patches.
* debian/rules: build avx and sse3 version for amd64
-- Michael R. Crusoe <crusoe@debian.org> Sat, 30 Jan 2021 10:03:12 +0100
hyphy (2.5.27+dfsg-1) unstable; urgency=medium
* New upstream version
-- Nilesh Patra <npatra974@gmail.com> Tue, 26 Jan 2021 16:47:41 +0530
hyphy (2.5.26+dfsg-1) unstable; urgency=medium
* New upstream version 2.5.26+dfsg
* Add createmanpages script to
manage manpages for future versions
* Update hyphy manpage
-- Nilesh Patra <npatra974@gmail.com> Mon, 18 Jan 2021 13:57:49 +0000
hyphy (2.5.25+dfsg-1) unstable; urgency=medium
* New upstream version
-- Nilesh Patra <npatra974@gmail.com> Sun, 10 Jan 2021 11:25:52 +0530
hyphy (2.5.24+dfsg-2) unstable; urgency=medium
[ Pino Toscano ]
* Fix reference to the build directory
Closes: #977992
-- Andreas Tille <tille@debian.org> Thu, 24 Dec 2020 07:11:25 +0100
hyphy (2.5.24+dfsg-1) unstable; urgency=medium
* New upstream version
* Standards-Version: 4.5.1 (routine-update)
-- Nilesh Patra <npatra974@gmail.com> Mon, 21 Dec 2020 13:35:37 +0530
hyphy (2.5.23+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version
-- Nilesh Patra <npatra974@gmail.com> Wed, 18 Nov 2020 20:07:16 +0000
hyphy (2.5.22+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version
-- Nilesh Patra <npatra974@gmail.com> Tue, 17 Nov 2020 18:54:31 +0530
hyphy (2.5.21+dfsg-2) unstable; urgency=medium
* Team Upload.
* Remove failing tests on 32-bit archs
-- Nilesh Patra <npatra974@gmail.com> Sat, 31 Oct 2020 23:42:17 +0530
hyphy (2.5.21+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version
-- Nilesh Patra <npatra974@gmail.com> Sat, 31 Oct 2020 19:16:55 +0530
hyphy (2.5.20+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version
-- Nilesh Patra <npatra974@gmail.com> Thu, 22 Oct 2020 20:14:59 +0530
hyphy (2.5.19+dfsg-1) unstable; urgency=medium
* New upstream version
* Refresh patches
* Wrap up manual pages for hyphy-pt and hyphy-mpi
-- Étienne Mollier <etienne.mollier@mailoo.org> Sat, 10 Oct 2020 15:27:47 +0200
hyphy (2.5.18+dfsg-1) unstable; urgency=medium
[ Étienne Mollier ]
* New upstream version
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* Build with NOAVX and NOSSE3 cmake switches. (Closes: #961382)
* GTEST removed in favor of script run_unit_tests.sh:
- updated d/copyright to remove gtest and include src/contrib;
- removed note about gtest in d/rules;
- removed lintian-overrides related to gtest.
* Refreshed patches:
- removed drop_profiling_option.patch;
- removed patches related to gtest;
- refreshed use_debian_sqlite.patch;
- added patch to fix compilation issues with NOAVX and NOSSE3;
- added patch to allow compilation on non-x86 CPU architectures.
* Refreshed d/hyphy-common.install.
[ Andreas Tille ]
* d/rules: Remove some settings made for the former Python package
-- Étienne Mollier <etienne.mollier@mailoo.org> Mon, 28 Sep 2020 21:33:54 +0200
hyphy (2.5.1+dfsg-3) unstable; urgency=medium
* Versioned Depends: hyphy-common (= ${source:Version})
Closes: #948093
-- Andreas Tille <tille@debian.org> Tue, 07 Jan 2020 21:23:52 +0100
hyphy (2.5.1+dfsg-2) unstable; urgency=medium
* Fix installation of NEWS.Debian to enable arch all only builds
* Make autopkgtest more verbose
-- Andreas Tille <tille@debian.org> Sat, 04 Jan 2020 21:21:58 +0100
hyphy (2.5.1+dfsg-1) unstable; urgency=medium
[ Helmut Grohne ]
* Add pkg-config to Build-Depends as FindMPI.cmake will need it for cross
compilation. (Closes: #943311)
[ Andreas Tille ]
* New upstream version
* debhelper-compat 12
* Secure URI in copyright format
* Remove trailing whitespace in debian/changelog
* New upstream version
* Standards-Version: 4.4.1
* Use secure URI in Homepage field.
* Remove patches msse_option_only_if_available.patch that are missing
from debian/patches/series.
* Skip GTEST target for the moment since this is currently in flux
see https://github.com/veg/hyphy/issues/1058
* No need to rename executables any more since upstream is doing this now
* Autopkgtest exists since last release - so close bug
Closes: #909707
-- Andreas Tille <tille@debian.org> Fri, 06 Dec 2019 22:47:47 +0100
hyphy (2.3.14+dfsg-2) unstable; urgency=medium
[ Saira Hussain ]
* Team upload.
* Add unit test description file
* Add the SimpleAnalyses suite for testing
* Add control file for AUTOPKGTESTS
[ Andreas Tille ]
* Standards-Version: 4.3.1
-- Saira Hussain <saira.0213@zoho.com> Fri, 05 Jul 2019 13:45:06 +0000
hyphy (2.3.14+dfsg-1) unstable; urgency=medium
* New upstream version
* debhelper 11
* Standards-Version: 4.2.1
-- Andreas Tille <tille@debian.org> Wed, 26 Sep 2018 16:55:30 +0200
hyphy (2.3.13+dfsg-1) unstable; urgency=medium
* Team upload.
[ Steffen Moeller ]
* debian/upstream/metadata: Added ref to OMICtools
[ Andreas Tille ]
* New upstream version
* debhelper 11
* Add Build-Depends: opencl-dev
* debian/rules:
- Do not parse d/changelog
- regard $(DEB_BUILD_OPTIONS) for override_dh_auto_test
[ Liubov Chuprikova ]
* Drop hyphygui as it was removed from upstream
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.5
-- Liubov Chuprikova <chuprikovalv@gmail.com> Tue, 10 Jul 2018 08:39:13 +0200
hyphy (2.2.7+dfsg-1) unstable; urgency=medium
* New upstream version
* Use xz compression in d/watch
* python-hyphy is now distributed in separate source archive so
removing it from this package
-- Andreas Tille <tille@debian.org> Fri, 14 Oct 2016 08:01:08 +0200
hyphy (2.2.6+dfsg-5) unstable; urgency=medium
* Fix error: narrowing conversion from 'double' to 'unsigned char'
* Fix error: replacing false with nil
Closes: #811866
-- Andreas Tille <tille@debian.org> Mon, 15 Aug 2016 12:44:58 +0200
hyphy (2.2.6+dfsg-4) unstable; urgency=medium
* Fix gcc-6 build issue by incorporating upstream patch
Closes: #811866
* cme fix dpkg-control
* Fix more spelling errors
* hardening=+bindnow
-- Andreas Tille <tille@debian.org> Fri, 22 Jul 2016 15:05:54 +0200
hyphy (2.2.6+dfsg-3) unstable; urgency=medium
* Change build-dep on python3-dev to python3-all-dev to enable building for
all supported python3 versions (thanks to Scott Kitterman
<debian@kitterman.com> for the patch)
Closes: #809452
-- Andreas Tille <tille@debian.org> Wed, 30 Dec 2015 21:49:03 +0100
hyphy (2.2.6+dfsg-2) unstable; urgency=medium
[ Matthias Klose ]
* Hand-edit swig generated file to build with Python3.5.
Closes: #802999
[ Andreas Tille ]
* Remove arch specific flags
Closes: #802994
-- Andreas Tille <tille@debian.org> Mon, 26 Oct 2015 11:20:39 +0100
hyphy (2.2.6+dfsg-1) unstable; urgency=medium
* New upstream version
* Hack around a mac-ism in setup.py
-- Andreas Tille <tille@debian.org> Tue, 22 Sep 2015 17:50:33 +0200
hyphy (2.2.5+dfsg-2) unstable; urgency=medium
* Versioned Build-Depends: cmake (>= 3.0)
* Drop profiling option (Thanks for the hint to Michael Banck
<mbanck@debian.org>)
Closes: #793345
* Disable unneded test that breaks on 32 bit architectures (Thanks for
the hint to Jakub Wilk <jwilk@debian.org>)
Closes: #793346
* Make sure that also in tests the existence of SSE3 extension is done
Closes: #793344
-- Andreas Tille <tille@debian.org> Thu, 23 Jul 2015 17:13:45 +0200
hyphy (2.2.5+dfsg-1) unstable; urgency=low
* Initial release (Closes: #792087)
-- Andreas Tille <tille@debian.org> Sat, 11 Jul 2015 06:57:36 +0200