hyphy (2.5.47+dfsg-1) unstable; urgency=medium * New upstream version -- Andreas Tille Sun, 05 Feb 2023 20:48:53 +0100 hyphy (2.5.46+dfsg-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.6.2 (routine-update) -- Andreas Tille Tue, 24 Jan 2023 15:50:21 +0100 hyphy (2.5.42+dfsg-1) unstable; urgency=medium * New upstream version -- Andreas Tille Thu, 22 Sep 2022 09:13:46 +0200 hyphy (2.5.41+dfsg-1) unstable; urgency=medium * New upstream version -- Andreas Tille Wed, 24 Aug 2022 14:08:01 +0200 hyphy (2.5.40+dfsg-1) unstable; urgency=medium * New upstream version 2.5.40+dfsg * d/*.lintian-overrides: refresh overrides to new convention. -- Étienne Mollier Fri, 15 Jul 2022 10:08:29 +0200 hyphy (2.5.39+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * Proper filename for upstream tarball [ Étienne Mollier ] * New upstream version * Standards-Version: 4.6.1 (routine-update) -- Étienne Mollier Tue, 31 May 2022 19:37:50 +0200 hyphy (2.5.38+dfsg-1) unstable; urgency=medium * New upstream version -- Andreas Tille Mon, 02 May 2022 12:18:35 +0200 hyphy (2.5.36+dfsg-1) unstable; urgency=medium * New upstream version -- Étienne Mollier Fri, 11 Feb 2022 13:35:31 +0100 hyphy (2.5.33+dfsg-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.6.0 (routine-update) -- Nilesh Patra Tue, 19 Oct 2021 10:07:52 +0000 hyphy (2.5.32+dfsg-1) unstable; urgency=medium * New upstream version 2.5.32+dfsg * Refresh d/p/use_debian_sqlite.patch, do not impose ZLIB changes on the same patch so as to avoid confusion * d/p/set-zlib-after-setting-default-libs.patch: Check for existence of ZLIB *after* DEFAULT_LIBRARIES have been set -- Nilesh Patra Wed, 25 Aug 2021 19:44:43 +0530 hyphy (2.5.31+dfsg-1) unstable; urgency=medium [ Michael R. Crusoe ] * Removed spelling patch, it was merged upstream [ Étienne Mollier ] * Remove d/*.maintscriptsL: these have been brought in the earlier release of hyphy 2.5.28+dfsg-3 * d/control: update uploader address * d/watch: fix broken link to github [ Nilesh Patra ] * d/watch: Fix watch regex * New upstream version 2.5.31+dfsg * d/p/*.patch: Refresh patches * d/p/use_debian_sqlite.patch: Check for existence of ZLIB *after* DEFAULT_LIBRARIES have been set * Fix copyright -- Nilesh Patra Sun, 15 Aug 2021 19:06:23 +0530 hyphy (2.5.28+dfsg-3) unstable; urgency=medium * d/*.maintscript: handle symbolic link removal in hyphy 2.5.18+dfsg-1. Closes: #985284 -- Étienne Mollier Tue, 16 Mar 2021 21:52:00 +0100 hyphy (2.5.28+dfsg-2) unstable; urgency=medium * Team upload. * debian/rules: set LC_ALL to fix groff warnings in the manpages * debian/patches/spelling: fix some typos * debian/rules: delete erroneous rpath for the MPI binaries * debian/rules: improve the clean target -- Michael R. Crusoe Sat, 20 Feb 2021 10:57:19 +0100 hyphy (2.5.28+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version * debian/tests/run-unit-tests: don't skip four tests that are now passing -- Michael R. Crusoe Fri, 19 Feb 2021 17:15:31 +0100 hyphy (2.5.27+dfsg-4) unstable; urgency=medium * Team upload. * Fix arch independent build issue which cause the amd64 autopkgtests to fail. * On amd64, run the build-time tests the SIMD varients that are supported by the build-time CPU. -- Michael R. Crusoe Sun, 31 Jan 2021 11:05:20 +0100 hyphy (2.5.27+dfsg-3) unstable; urgency=medium * Team upload. * Fix arch independent build. * debian/control: mark hyphy-common as Multi-Arch: foreign -- Michael R. Crusoe Sat, 30 Jan 2021 12:52:56 +0100 hyphy (2.5.27+dfsg-2) unstable; urgency=medium * Team upload. * Refresh patches. * debian/rules: build avx and sse3 version for amd64 -- Michael R. Crusoe Sat, 30 Jan 2021 10:03:12 +0100 hyphy (2.5.27+dfsg-1) unstable; urgency=medium * New upstream version -- Nilesh Patra Tue, 26 Jan 2021 16:47:41 +0530 hyphy (2.5.26+dfsg-1) unstable; urgency=medium * New upstream version 2.5.26+dfsg * Add createmanpages script to manage manpages for future versions * Update hyphy manpage -- Nilesh Patra Mon, 18 Jan 2021 13:57:49 +0000 hyphy (2.5.25+dfsg-1) unstable; urgency=medium * New upstream version -- Nilesh Patra Sun, 10 Jan 2021 11:25:52 +0530 hyphy (2.5.24+dfsg-2) unstable; urgency=medium [ Pino Toscano ] * Fix reference to the build directory Closes: #977992 -- Andreas Tille Thu, 24 Dec 2020 07:11:25 +0100 hyphy (2.5.24+dfsg-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.5.1 (routine-update) -- Nilesh Patra Mon, 21 Dec 2020 13:35:37 +0530 hyphy (2.5.23+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version -- Nilesh Patra Wed, 18 Nov 2020 20:07:16 +0000 hyphy (2.5.22+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version -- Nilesh Patra Tue, 17 Nov 2020 18:54:31 +0530 hyphy (2.5.21+dfsg-2) unstable; urgency=medium * Team Upload. * Remove failing tests on 32-bit archs -- Nilesh Patra Sat, 31 Oct 2020 23:42:17 +0530 hyphy (2.5.21+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version -- Nilesh Patra Sat, 31 Oct 2020 19:16:55 +0530 hyphy (2.5.20+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version -- Nilesh Patra Thu, 22 Oct 2020 20:14:59 +0530 hyphy (2.5.19+dfsg-1) unstable; urgency=medium * New upstream version * Refresh patches * Wrap up manual pages for hyphy-pt and hyphy-mpi -- Étienne Mollier Sat, 10 Oct 2020 15:27:47 +0200 hyphy (2.5.18+dfsg-1) unstable; urgency=medium [ Étienne Mollier ] * New upstream version * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Build with NOAVX and NOSSE3 cmake switches. (Closes: #961382) * GTEST removed in favor of script run_unit_tests.sh: - updated d/copyright to remove gtest and include src/contrib; - removed note about gtest in d/rules; - removed lintian-overrides related to gtest. * Refreshed patches: - removed drop_profiling_option.patch; - removed patches related to gtest; - refreshed use_debian_sqlite.patch; - added patch to fix compilation issues with NOAVX and NOSSE3; - added patch to allow compilation on non-x86 CPU architectures. * Refreshed d/hyphy-common.install. [ Andreas Tille ] * d/rules: Remove some settings made for the former Python package -- Étienne Mollier Mon, 28 Sep 2020 21:33:54 +0200 hyphy (2.5.1+dfsg-3) unstable; urgency=medium * Versioned Depends: hyphy-common (= ${source:Version}) Closes: #948093 -- Andreas Tille Tue, 07 Jan 2020 21:23:52 +0100 hyphy (2.5.1+dfsg-2) unstable; urgency=medium * Fix installation of NEWS.Debian to enable arch all only builds * Make autopkgtest more verbose -- Andreas Tille Sat, 04 Jan 2020 21:21:58 +0100 hyphy (2.5.1+dfsg-1) unstable; urgency=medium [ Helmut Grohne ] * Add pkg-config to Build-Depends as FindMPI.cmake will need it for cross compilation. (Closes: #943311) [ Andreas Tille ] * New upstream version * debhelper-compat 12 * Secure URI in copyright format * Remove trailing whitespace in debian/changelog * New upstream version * Standards-Version: 4.4.1 * Use secure URI in Homepage field. * Remove patches msse_option_only_if_available.patch that are missing from debian/patches/series. * Skip GTEST target for the moment since this is currently in flux see https://github.com/veg/hyphy/issues/1058 * No need to rename executables any more since upstream is doing this now * Autopkgtest exists since last release - so close bug Closes: #909707 -- Andreas Tille Fri, 06 Dec 2019 22:47:47 +0100 hyphy (2.3.14+dfsg-2) unstable; urgency=medium [ Saira Hussain ] * Team upload. * Add unit test description file * Add the SimpleAnalyses suite for testing * Add control file for AUTOPKGTESTS [ Andreas Tille ] * Standards-Version: 4.3.1 -- Saira Hussain Fri, 05 Jul 2019 13:45:06 +0000 hyphy (2.3.14+dfsg-1) unstable; urgency=medium * New upstream version * debhelper 11 * Standards-Version: 4.2.1 -- Andreas Tille Wed, 26 Sep 2018 16:55:30 +0200 hyphy (2.3.13+dfsg-1) unstable; urgency=medium * Team upload. [ Steffen Moeller ] * debian/upstream/metadata: Added ref to OMICtools [ Andreas Tille ] * New upstream version * debhelper 11 * Add Build-Depends: opencl-dev * debian/rules: - Do not parse d/changelog - regard $(DEB_BUILD_OPTIONS) for override_dh_auto_test [ Liubov Chuprikova ] * Drop hyphygui as it was removed from upstream * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.5 -- Liubov Chuprikova Tue, 10 Jul 2018 08:39:13 +0200 hyphy (2.2.7+dfsg-1) unstable; urgency=medium * New upstream version * Use xz compression in d/watch * python-hyphy is now distributed in separate source archive so removing it from this package -- Andreas Tille Fri, 14 Oct 2016 08:01:08 +0200 hyphy (2.2.6+dfsg-5) unstable; urgency=medium * Fix error: narrowing conversion from 'double' to 'unsigned char' * Fix error: replacing false with nil Closes: #811866 -- Andreas Tille Mon, 15 Aug 2016 12:44:58 +0200 hyphy (2.2.6+dfsg-4) unstable; urgency=medium * Fix gcc-6 build issue by incorporating upstream patch Closes: #811866 * cme fix dpkg-control * Fix more spelling errors * hardening=+bindnow -- Andreas Tille Fri, 22 Jul 2016 15:05:54 +0200 hyphy (2.2.6+dfsg-3) unstable; urgency=medium * Change build-dep on python3-dev to python3-all-dev to enable building for all supported python3 versions (thanks to Scott Kitterman for the patch) Closes: #809452 -- Andreas Tille Wed, 30 Dec 2015 21:49:03 +0100 hyphy (2.2.6+dfsg-2) unstable; urgency=medium [ Matthias Klose ] * Hand-edit swig generated file to build with Python3.5. Closes: #802999 [ Andreas Tille ] * Remove arch specific flags Closes: #802994 -- Andreas Tille Mon, 26 Oct 2015 11:20:39 +0100 hyphy (2.2.6+dfsg-1) unstable; urgency=medium * New upstream version * Hack around a mac-ism in setup.py -- Andreas Tille Tue, 22 Sep 2015 17:50:33 +0200 hyphy (2.2.5+dfsg-2) unstable; urgency=medium * Versioned Build-Depends: cmake (>= 3.0) * Drop profiling option (Thanks for the hint to Michael Banck ) Closes: #793345 * Disable unneded test that breaks on 32 bit architectures (Thanks for the hint to Jakub Wilk ) Closes: #793346 * Make sure that also in tests the existence of SSE3 extension is done Closes: #793344 -- Andreas Tille Thu, 23 Jul 2015 17:13:45 +0200 hyphy (2.2.5+dfsg-1) unstable; urgency=low * Initial release (Closes: #792087) -- Andreas Tille Sat, 11 Jul 2015 06:57:36 +0200